MS020575 (gene) Bitter gourd (TR) v1

Overview


Name	MS020575
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	B-box type zinc finger family protein
Location	scaffold375: 1314179 .. 1314330 (+)
RNA-Seq Expression	MS020575
Synteny	MS020575

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAAGAAATTGTGCACGTGCAAGTCTCCGGCGAATGTGGTGTGTGGAGTGGATGAAACAAGGCTGTGTTGGGGTGCGATTGGAAGGTCCACAACGCCAATTTTCTGCTGGGGAAACATTTGAGGGTTTTTCTCTTCCATGGCTGCCAAGCT

mRNA sequence

ATTAAGAAATTGTGCACGTGCAAGTCTCCGGCGAATGTGGTGTGTGGAGTGGATGAAACAAGGCTGTGTTGGTGCGATTGGAAGGTCCACAACGCCAATTTTCTGCTGGGGAAACATTTGAGGGTTTTTCTCTTCCATGGCTGCCAAGCT

Coding sequence (CDS)

ATTAAGAAATTGTGCACGTGCAAGTCTCCGGCGAATGTGGTGTGTGGAGTGGATGAAACAAGGCTGTGTTGGTGCGATTGGAAGGTCCACAACGCCAATTTTCTGCTGGGGAAACATTTGAGGGTTTTTCTCTTCCATGGCTGCCAAGCT

Protein sequence

IKKLCTCKSPANVVCGVDETRLCWCDWKVHNANFLLGKHLRVFLFHGCQA

Homology

[Close]

BLAST of MS020575 vs. NCBI nr
Match: KAG6603735.1 (B-box domain protein 31, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.7 bits (169), Expect = 8.1e-09
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 1  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA 51
          +KKLC  C   A V+C  D+ RLCW CD KVH ANFL+GKHLRV L H CQA
Sbjct: 1  MKKLCELCDCVATVICESDQARLCWGCDSKVHGANFLVGKHLRVLLCHDCQA 52

[Close]

BLAST of MS020575 vs. NCBI nr
Match: XP_023544021.1 (zinc finger protein CONSTANS-LIKE 13-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.7 bits (169), Expect = 8.1e-09
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 1  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA 51
          +KKLC  C   A V+C  D+ RLCW CD KVH ANFL+GKHLRV L H CQA
Sbjct: 1  MKKLCELCDCVATVICESDQARLCWGCDSKVHGANFLVGKHLRVLLCHDCQA 52

[Close]

BLAST of MS020575 vs. NCBI nr
Match: XP_022950367.1 (putative zinc finger protein At1g68190 [Cucurbita moschata])

HSP 1 Score: 69.7 bits (169), Expect = 8.1e-09
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 1  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA 51
          +KKLC  C   A V+C  D+ RLCW CD KVH ANFL+GKHLRV L H CQA
Sbjct: 1  MKKLCELCDCVATVICESDQARLCWGCDSKVHGANFLVGKHLRVLLCHDCQA 52

[Close]

BLAST of MS020575 vs. NCBI nr
Match: XP_022977340.1 (zinc finger protein CONSTANS-LIKE 13-like [Cucurbita maxima])

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-08
Identity = 33/52 (63.46%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 1  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA 51
          +KKLC  C   A V+C  DE RLCW CD KVH ANFL+GKH RV L H CQA
Sbjct: 1  MKKLCELCDCVATVICESDEARLCWGCDSKVHGANFLVGKHWRVLLCHDCQA 52

[Close]

BLAST of MS020575 vs. NCBI nr
Match: TYK13089.1 (putative zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 32/52 (61.54%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 1  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA 51
          +KKLC  C   A V+C  D   LCW CD KVH ANFL+GKHLRV L H CQA
Sbjct: 1  MKKLCELCGCVATVMCEADAAMLCWGCDSKVHGANFLVGKHLRVLLCHDCQA 52

[Close]

BLAST of MS020575 vs. ExPASy Swiss-Prot
Match: Q9SYM2 (B-box zinc finger protein 22 OS=Arabidopsis thaliana OX=3702 GN=BBX22 PE=1 SV=2)

HSP 1 Score: 44.3 bits (103), Expect = 4.8e-04
Identity = 20/33 (60.61%), Postives = 22/33 (66.67%), Query Frame = 0


Query: 11 ANVVCGVDETRLCW-CDWKVHNANFLLGKHLRV 43
          A V+C  DE  LCW CD K+H AN L GKH RV
Sbjct: 13 ATVLCCADEAALCWACDEKIHAANKLAGKHQRV 45

[Close]

BLAST of MS020575 vs. ExPASy TrEMBL
Match: A0A6J1GEL4 (putative zinc finger protein At1g68190 OS=Cucurbita moschata OX=3662 GN=LOC111453480 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-09
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 1  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA 51
          +KKLC  C   A V+C  D+ RLCW CD KVH ANFL+GKHLRV L H CQA
Sbjct: 1  MKKLCELCDCVATVICESDQARLCWGCDSKVHGANFLVGKHLRVLLCHDCQA 52

[Close]

BLAST of MS020575 vs. ExPASy TrEMBL
Match: A0A6J1IM17 (zinc finger protein CONSTANS-LIKE 13-like OS=Cucurbita maxima OX=3661 GN=LOC111477691 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.7e-09
Identity = 33/52 (63.46%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 1  IKKLC-TCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA 51
          +KKLC  C   A V+C  DE RLCW CD KVH ANFL+GKH RV L H CQA
Sbjct: 1  MKKLCELCDCVATVICESDEARLCWGCDSKVHGANFLVGKHWRVLLCHDCQA 52

[Close]

BLAST of MS020575 vs. ExPASy TrEMBL
Match: A0A166AAI8 (B box-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009704 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-07
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 7  CKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA 51
          CKS A V C  DE RLCW CD KVH+ANFL+ +H+R  L H CQA
Sbjct: 7  CKSSARVYCESDEARLCWSCDAKVHSANFLVARHVRNLLCHSCQA 51

[Close]

BLAST of MS020575 vs. ExPASy TrEMBL
Match: A0A7J7M9Q1 (B box-type domain-containing protein OS=Kingdonia uniflora OX=39325 GN=GIB67_021758 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.7e-07
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 1  IKKLCTCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA 51
          +K+   CKSPA + C  DE  LCW CD K+H ANFL+ +H R  L HGCQ+
Sbjct: 1  MKECELCKSPARMYCESDEASLCWDCDKKIHAANFLVARHTRTLLCHGCQS 51

[Close]

BLAST of MS020575 vs. ExPASy TrEMBL
Match: A0A6L5BDM3 (B box-type domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_007207 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 7  CKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA 51
          CK+ A V C  D+ RLCW CD KVH+ANFL+ +H+R  L H CQA
Sbjct: 7  CKNTARVYCESDDARLCWSCDAKVHSANFLVARHVRNLLCHSCQA 51

[Close]

BLAST of MS020575 vs. TAIR 10
Match: AT4G27310.1 (B-box type zinc finger family protein )

HSP 1 Score: 53.1 bits (126), Expect = 7.3e-08
Identity = 24/50 (48.00%), Postives = 28/50 (56.00%), Query Frame = 0


Query: 2  KKLCTCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA 51
          KK   C   A + C  D+  LCW CD KVH ANFL+ KH R  L   CQ+
Sbjct: 3  KKCDLCNGVARMYCESDQASLCWDCDGKVHGANFLVAKHTRCLLCSACQS 52

[Close]

BLAST of MS020575 vs. TAIR 10
Match: AT5G54470.1 (B-box type zinc finger family protein )

HSP 1 Score: 52.8 bits (125), Expect = 9.5e-08
Identity = 24/50 (48.00%), Postives = 29/50 (58.00%), Query Frame = 0


Query: 2  KKLCTCKSPANVVCGVDETRLCW-CDWKVHNANFLLGKHLRVFLFHGCQA 51
          KK   C   A + C  D+  LCW CD KVH ANFL+ KH+R  L   CQ+
Sbjct: 4  KKCELCCGVARMYCESDQASLCWDCDGKVHGANFLVAKHMRCLLCSACQS 53

[Close]

BLAST of MS020575 vs. TAIR 10
Match: AT1G78600.1 (light-regulated zinc finger protein 1 )

HSP 1 Score: 44.3 bits (103), Expect = 3.4e-05
Identity = 20/33 (60.61%), Postives = 22/33 (66.67%), Query Frame = 0


Query: 11 ANVVCGVDETRLCW-CDWKVHNANFLLGKHLRV 43
          A V+C  DE  LCW CD K+H AN L GKH RV
Sbjct: 13 ATVLCCADEAALCWACDEKIHAANKLAGKHQRV 45

[Close]

BLAST of MS020575 vs. TAIR 10
Match: AT1G78600.2 (light-regulated zinc finger protein 1 )

HSP 1 Score: 44.3 bits (103), Expect = 3.4e-05
Identity = 20/33 (60.61%), Postives = 22/33 (66.67%), Query Frame = 0


Query: 11 ANVVCGVDETRLCW-CDWKVHNANFLLGKHLRV 43
          A V+C  DE  LCW CD K+H AN L GKH RV
Sbjct: 13 ATVLCCADEAALCWACDEKIHAANKLAGKHQRV 45

[Close]

BLAST of MS020575 vs. TAIR 10
Match: AT2G31380.1 (salt tolerance homologue )

HSP 1 Score: 43.1 bits (100), Expect = 7.5e-05
Identity = 20/38 (52.63%), Postives = 25/38 (65.79%), Query Frame = 0


Query: 8  KSPANVVCGVDETRLC-WCDWKVHNANFLLGKHLRVFL 45
          K+PA ++C  DE  LC  CD +VH AN L  KH R+FL
Sbjct: 10 KAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFL 47

The following BLAST results are available for this feature:

BLAST of MS020575 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603735.1	8.1e-09	63.46	B-box domain protein 31, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023544021.1	8.1e-09	63.46	zinc finger protein CONSTANS-LIKE 13-like [Cucurbita pepo subsp. pepo]	[more]
XP_022950367.1	8.1e-09	63.46	putative zinc finger protein At1g68190 [Cucurbita moschata]	[more]
XP_022977340.1	1.8e-08	63.46	zinc finger protein CONSTANS-LIKE 13-like [Cucurbita maxima]	[more]
TYK13089.1	1.2e-07	61.54	putative zinc finger protein [Cucumis melo var. makuwa]	[more]

BLAST of MS020575 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYM2	4.8e-04	60.61	B-box zinc finger protein 22 OS=Arabidopsis thaliana OX=3702 GN=BBX22 PE=1 SV=2	[more]

BLAST of MS020575 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GEL4	3.9e-09	63.46	putative zinc finger protein At1g68190 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1IM17	8.7e-09	63.46	zinc finger protein CONSTANS-LIKE 13-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A166AAI8	2.1e-07	62.22	B box-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN...	[more]
A0A7J7M9Q1	3.7e-07	52.94	B box-type domain-containing protein OS=Kingdonia uniflora OX=39325 GN=GIB67_021...	[more]
A0A6L5BDM3	1.1e-06	57.78	B box-type domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_00720...	[more]

BLAST of MS020575 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27310.1	7.3e-08	48.00	B-box type zinc finger family protein	[more]
AT5G54470.1	9.5e-08	48.00	B-box type zinc finger family protein	[more]
AT1G78600.1	3.4e-05	60.61	light-regulated zinc finger protein 1	[more]
AT1G78600.2	3.4e-05	60.61	light-regulated zinc finger protein 1	[more]
AT2G31380.1	7.5e-05	52.63	salt tolerance homologue	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020575.1	MS020575.1	mRNA