MS020560 (gene) Bitter gourd (TR) v1

Overview


Name	MS020560
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	late embryogenesis abundant protein-like
Location	scaffold375: 1182839 .. 1183561 (+)
RNA-Seq Expression	MS020560
Synteny	MS020560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATGTACGTGACGAGCGTGGGAACCCGATCCAGCTCACCGACGAACGGGGCAACCCGGTTGAACTGACCGACGAATTCGGCAACCCCATGCACCTCACCGGTGTCGCCACCGCCGCGTCGAAGCTCGAGTCCACTGGTGGCGACGTTGGCCAGACGCAGCTGCTTCCGGAGCCCGTTCCCGACCAGGCCGGCTCGCCTCGTCGCTCTACCAGCTCCAGCTCCAGCTCGGTGAGCCCATCTTAAGATTTTGAGTCCTTGTTTAATTTGGCCATTTTAGAGTGTGTTTGAGAATCACCTCTGTCATCAAAATCATTTTGATTATGTTTGGAAAATTAAAAGATTGATTTTAGAAAGCTTAAAATCACTCGTTCTATCATCATTTTCAAACACACCTCCAGTCGTCGTCGCTGAACATTAATTTCAAAGTAAACAAGAAGTGAAGTTGAAAATTTGAGAGATGAGGTGATGTGTTTGCAGTCAGAGGACGACGGGCAAGGTGGGAGGAGGAGGAAGAAGAAAGGGTTGACGCAGAAGATAAAGGAGAAGTTAACCGGGAGCGGGAAACACAAGGGCGAGGCTGCCCCGGCACCGGGCTGCCACCAGTACACCACCGTGGAGGCGAAGACGACGTCGACCGTCGACGTGGAACCACATCATCAGGATCGTGAGAAGAAGGGGGTTATGGAGAAGATCAGGGAAAAATTGCCAGGTCACCAT

mRNA sequence

ATGGCGGATGTACGTGACGAGCGTGGGAACCCGATCCAGCTCACCGACGAACGGGGCAACCCGGTTGAACTGACCGACGAATTCGGCAACCCCATGCACCTCACCGGTGTCGCCACCGCCGCGTCGAAGCTCGAGTCCACTGGTGGCGACGTTGGCCAGACGCAGCTGCTTCCGGAGCCCGTTCCCGACCAGGCCGGCTCGCCTCGTCGCTCTACCAGCTCCAGCTCCAGCTCGTCAGAGGACGACGGGCAAGGTGGGAGGAGGAGGAAGAAGAAAGGGTTGACGCAGAAGATAAAGGAGAAGTTAACCGGGAGCGGGAAACACAAGGGCGAGGCTGCCCCGGCACCGGGCTGCCACCAGTACACCACCGTGGAGGCGAAGACGACGTCGACCGTCGACGTGGAACCACATCATCAGGATCGTGAGAAGAAGGGGGTTATGGAGAAGATCAGGGAAAAATTGCCAGGTCACCAT

Coding sequence (CDS)

ATGGCGGATGTACGTGACGAGCGTGGGAACCCGATCCAGCTCACCGACGAACGGGGCAACCCGGTTGAACTGACCGACGAATTCGGCAACCCCATGCACCTCACCGGTGTCGCCACCGCCGCGTCGAAGCTCGAGTCCACTGGTGGCGACGTTGGCCAGACGCAGCTGCTTCCGGAGCCCGTTCCCGACCAGGCCGGCTCGCCTCGTCGCTCTACCAGCTCCAGCTCCAGCTCGTCAGAGGACGACGGGCAAGGTGGGAGGAGGAGGAAGAAGAAAGGGTTGACGCAGAAGATAAAGGAGAAGTTAACCGGGAGCGGGAAACACAAGGGCGAGGCTGCCCCGGCACCGGGCTGCCACCAGTACACCACCGTGGAGGCGAAGACGACGTCGACCGTCGACGTGGAACCACATCATCAGGATCGTGAGAAGAAGGGGGTTATGGAGAAGATCAGGGAAAAATTGCCAGGTCACCAT

Protein sequence

MADVRDERGNPIQLTDERGNPVELTDEFGNPMHLTGVATAASKLESTGGDVGQTQLLPEPVPDQAGSPRRSTSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSGKHKGEAAPAPGCHQYTTVEAKTTSTVDVEPHHQDREKKGVMEKIREKLPGHH

Homology

[Close]

BLAST of MS020560 vs. NCBI nr
Match: XP_022146212.1 (late embryogenesis abundant protein-like [Momordica charantia])

HSP 1 Score: 305.4 bits (781), Expect = 2.8e-79
Identity = 156/158 (98.73%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MADVRDERGNPIQLTDERGNPVELTDEFGNPMHLTGVATAASKLESTGGDVGQTQLLPEP 60
           MADVRDERGNPIQLTDERGNPVELTDEFGNPMHLTGVATAASKLESTGGDVGQTQLLP+P
Sbjct: 1   MADVRDERGNPIQLTDERGNPVELTDEFGNPMHLTGVATAASKLESTGGDVGQTQLLPDP 60

Query: 61  VPDQAGSPRRSTSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSGKHKGEAAPAPGCHQ 120
            PDQAGSPRRSTSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSGKHKGEAAPAPGCHQ
Sbjct: 61  APDQAGSPRRSTSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSGKHKGEAAPAPGCHQ 120

Query: 121 YTTVEAKTTSTVDVEPHHQDREKKGVMEKIREKLPGHH 159
           YTTVEAKTTSTVDVEPHHQDREKKGVMEKIREKLPGHH
Sbjct: 121 YTTVEAKTTSTVDVEPHHQDREKKGVMEKIREKLPGHH 158

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BLAST of MS020560 vs. NCBI nr
Match: XP_038902144.1 (late embryogenesis abundant protein-like isoform X2 [Benincasa hispida])

HSP 1 Score: 188.3 bits (477), Expect = 4.9e-44
Identity = 116/164 (70.73%), Postives = 126/164 (76.83%), Query Frame = 0


Query: 1   MADVRDERGNPIQLTDERGNPVELTDEFGNPMHLTG-VATAASKLEST-----GGDVGQT 60
           MA+VRDE GNP+QLTDERGNPV+LTDEFGNPMHLTG VAT+ SKL+ST     G DV QT
Sbjct: 83  MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMHLTGVVATSPSKLDSTTTTPAGDDVAQT 142

Query: 61  QLLPEPVPDQAGSPRRSTSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSGKHKGEAAP 120
           QL  E      GSPRRS+SSSSSSSEDDGQGG RRKKKGLTQKIKEKLTGSGKHK     
Sbjct: 143 QLTREA---HDGSPRRSSSSSSSSSEDDGQGG-RRKKKGLTQKIKEKLTGSGKHKEAGTT 202

Query: 121 APGCHQYTTVEAKTTSTVDVEPHHQDREKKGVMEKIREKLPGHH 159
               HQ TTV   TTSTV+    HQ+  KKGVMEKI+E+LPGHH
Sbjct: 203 GAEHHQSTTV---TTSTVE----HQEHGKKGVMEKIKERLPGHH 235

[Close]

BLAST of MS020560 vs. NCBI nr
Match: XP_038902143.1 (embryogenic cell protein 40-like isoform X1 [Benincasa hispida])

HSP 1 Score: 183.7 bits (465), Expect = 1.2e-42
Identity = 116/176 (65.91%), Postives = 126/176 (71.59%), Query Frame = 0


Query: 1   MADVRDERGNPIQLTDERGNPVELTDEFGNPMHLTG-VATAASKLEST------------ 60
           MA+VRDE GNP+QLTDERGNPV+LTDEFGNPMHLTG VAT+ SKL+ST            
Sbjct: 1   MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMHLTGVVATSPSKLDSTTTTPVSYTHLDV 60

Query: 61  -----GGDVGQTQLLPEPVPDQAGSPRRSTSSSSSSSEDDGQGGRRRKKKGLTQKIKEKL 120
                G DV QTQL  E      GSPRRS+SSSSSSSEDDGQGG RRKKKGLTQKIKEKL
Sbjct: 61  YKRQAGDDVAQTQLTREA---HDGSPRRSSSSSSSSSEDDGQGG-RRKKKGLTQKIKEKL 120

Query: 121 TGSGKHKGEAAPAPGCHQYTTVEAKTTSTVDVEPHHQDREKKGVMEKIREKLPGHH 159
           TGSGKHK         HQ TTV   TTSTV+    HQ+  KKGVMEKI+E+LPGHH
Sbjct: 121 TGSGKHKEAGTTGAEHHQSTTV---TTSTVE----HQEHGKKGVMEKIKERLPGHH 165

[Close]

BLAST of MS020560 vs. NCBI nr
Match: XP_008460975.1 (PREDICTED: late embryogenesis abundant protein-like [Cucumis melo])

HSP 1 Score: 174.5 bits (441), Expect = 7.3e-40
Identity = 111/170 (65.29%), Postives = 120/170 (70.59%), Query Frame = 0


Query: 1   MADVRDERGNPIQLTDERGNPVELTDEFGNPMHLTG-VATAASKLEST-----------G 60
           MA+VRDE GNP+QLTDERGNPV+LTDEFGNPMHLTG V T  SKL+ T           G
Sbjct: 1   MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMHLTGVVGTTPSKLDPTAPPSNLGPTTIG 60

Query: 61  GDVGQTQLLPEPVPDQAGSPRRSTSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSGKH 120
            +V QTQ    P      SPRRS+SSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSGKH
Sbjct: 61  ENVAQTQ---PPREAHDTSPRRSSSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSGKH 120

Query: 121 KGEAAPAPGCHQYTTVEAKTTSTVDVEPHHQDREKKGVMEKIREKLPGHH 159
           K       G H  T   A TT+   VE  HQ+  KKGVMEKI+EKLPGHH
Sbjct: 121 K-----EGGTHDST---ATTTTVTSVE--HQETGKKGVMEKIKEKLPGHH 157

[Close]

BLAST of MS020560 vs. NCBI nr
Match: XP_004150075.1 (embryogenic cell protein 40 [Cucumis sativus] >KGN61826.1 hypothetical protein Csa_006233 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 2.4e-38
Identity = 110/172 (63.95%), Postives = 121/172 (70.35%), Query Frame = 0


Query: 1   MADVRDERGNPIQLTDERGNPVELTDEFGNPMHLTG-VATAASKLE-------------S 60
           MA+VRDE GNP+QLTDERGNPV+LTDEFGNPM LTG V T  S L              +
Sbjct: 1   MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTTPSNLHPTPPSNLHPTAVTT 60

Query: 61  TGGDVGQTQLLPEPVPDQAGSPRRSTSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSG 120
           TG +V QTQ  P  + D   SPRRS+SSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSG
Sbjct: 61  TGENVAQTQ-PPREIHD--ASPRRSSSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSG 120

Query: 121 KHKGEAAPAPGCHQYTTVEAKTTSTVDVEPHHQDREKKGVMEKIREKLPGHH 159
           KHK   A   G H     E+ TT+T  VE  H +  KKGVMEKI+EKLPGHH
Sbjct: 121 KHK--EAGTTGEHH----ESTTTTTTSVE--HHEPGKKGVMEKIKEKLPGHH 161

[Close]

BLAST of MS020560 vs. ExPASy Swiss-Prot
Match: P21298 (Late embryogenesis abundant protein OS=Raphanus sativus OX=3726 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.4e-30
Identity = 90/187 (48.13%), Postives = 110/187 (58.82%), Query Frame = 0


Query: 1   MADVRDERGNPIQLTDERGNPVELTDEFGNPMHLTGVATAASKL-ESTGGDVGQ--TQLL 60
           MAD++DERGNPI LTD  GNPV+L+DEFGNPMH+TGVA++A +  +S  G++ +  T+  
Sbjct: 1   MADLKDERGNPIHLTDAYGNPVQLSDEFGNPMHITGVASSAPQYKDSVTGNIAEYPTEAP 60

Query: 61  PEPVPDQAGSP--------------------------RRSTSSSSSSSEDDGQGGRRRKK 120
           P  V    G+                           RRS SSSSSSSEDDGQGGRR  K
Sbjct: 61  PAGVAAGTGAAATTAAGVTTSETTTGQEHHGSLGEHLRRSGSSSSSSSEDDGQGGRR--K 120

Query: 121 KGLTQKIKEKLTGSGKHKGEAAPAPGCHQYTTVEAKTTSTVDVEPHHQDREKKGVMEKIR 159
           K +  KIK+KL G GKHK E  P       TT    TT+T       Q  EKKG++EKI+
Sbjct: 121 KSIKDKIKDKL-GGGKHKDEQTPTTA----TTTGPTTTTTTTGAAADQHHEKKGILEKIK 180

[Close]

BLAST of MS020560 vs. ExPASy Swiss-Prot
Match: Q96261 (Probable dehydrin LEA OS=Arabidopsis thaliana OX=3702 GN=LEA PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.2e-26
Identity = 94/197 (47.72%), Postives = 111/197 (56.35%), Query Frame = 0


Query: 1   MADVRDERGNPIQLTDERGNP-VELTDEFGNPMHLTGVATAASK-LESTGGD-------- 60
           MAD+RDE+GNPI LTD +GNP V+LTDE GNPM+LTGV ++  +  EST  D        
Sbjct: 1   MADLRDEKGNPIHLTDTQGNPIVDLTDEHGNPMYLTGVVSSTPQHKESTTSDIAEHPTST 60

Query: 61  VGQTQLLPEPVPDQAGSP-----------------------------RRSTSSSSSSSED 120
           VG+T   P   P  AG+                              RRS SSSSSSSED
Sbjct: 61  VGETH--PAAAPAGAGAATAATATGVSAGTGATTTGQQHHGSLEEHLRRSGSSSSSSSED 120

Query: 121 DGQGGRRRKKKGLTQKIKEKLTGSGKHKGEAAPAPGCHQYTTVEAKTTSTVDVEPHHQDR 159
           DGQGGRR  KK + +KIKEK  GSGKHK E  PA      TT    TT     +PH    
Sbjct: 121 DGQGGRR--KKSIKEKIKEKF-GSGKHKDEQTPATA----TTTGPATTD----QPH---- 180

[Close]

BLAST of MS020560 vs. ExPASy Swiss-Prot
Match: Q07322 (Embryogenic cell protein 40 OS=Daucus carota OX=4039 GN=ECP40 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-15
Identity = 91/306 (29.74%), Postives = 112/306 (36.60%), Query Frame = 0


Query: 1   MADVRDERGNPIQLTDERGNPVELTDEFGNPMHLTGVATAASK---------------LE 60
           MAD+RDE+GNPIQLTD+ GNPV+LTDE+GNP+H+TGVAT  +                + 
Sbjct: 1   MADLRDEKGNPIQLTDQHGNPVQLTDEYGNPVHITGVATTGATTGHHDHGVGGASHGGVG 60

Query: 61  STG------------------------------------------------------GDV 120
           STG                                                      G  
Sbjct: 61  STGLGGVAGAAGLAGATAAAATHGGSHGGTGTHGVGPTGVGAAHGGTGTTTGLGTGTGTT 120

Query: 121 GQTQ-------------------------------------------------------- 159
           GQT                                                         
Sbjct: 121 GQTHGMGPTGIGGTHGVGSTGIGGAHGGTGVLGQTHGMGPTGTGAAHGGLGTGQSGLGSS 180

[Close]

BLAST of MS020560 vs. ExPASy Swiss-Prot
Match: P25863 (Dehydrin Xero 1 OS=Arabidopsis thaliana OX=3702 GN=XERO1 PE=2 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-13
Identity = 65/137 (47.45%), Postives = 74/137 (54.01%), Query Frame = 0


Query: 26  DEFGNPMHLT----GVATAASKLESTGGDVGQTQLLPEPVPDQAGSPRRSTSSSSSSSED 85
           D+FGNP   T    G A  A  +   GG               +G   RS SSSSSSSED
Sbjct: 18  DQFGNPFPATTGAYGTAGGAPAVAEGGG--------------LSGMLHRSGSSSSSSSED 77

Query: 86  DGQGGRRRKKKGLTQKIKEKLTGSGKHKGEAAPAPGCHQYTTVEAKTTSTVDVEPHHQDR 145
           DG GGRRRKKKG+T+KIKEKL   G H      + G    +T  A  T TV    HH   
Sbjct: 78  DGLGGRRRKKKGITEKIKEKL--PGHHDSNKTSSLG----STTTAYDTGTV----HH--- 127

Query: 146 EKKGVMEKIREKLPGHH 159
           EKKG+MEKI+EKLPG H
Sbjct: 138 EKKGMMEKIKEKLPGGH 127

[Close]

BLAST of MS020560 vs. ExPASy Swiss-Prot
Match: P30287 (Dehydrin Rab25 OS=Oryza sativa subsp. japonica OX=39947 GN=RAB25 PE=2 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-11
Identity = 59/140 (42.14%), Postives = 74/140 (52.86%), Query Frame = 0


Query: 23  ELTDEFGNPMHLTGVATAASKLESTGGDVGQTQLLPEPVPDQAGSPRRSTSSSSSSSEDD 82
           E T  +   +   GV  A+ +L+ T  + G T L      +      +S+SSSSSSSEDD
Sbjct: 103 EKTFAYEGTVSAAGVTGASGQLQPTTREEGHTTL-----GETLRRSGKSSSSSSSSSEDD 162

Query: 83  GQGGRRRKKKGLTQKIKEKLTGSGKHK-----GEAAPAPGCHQYTTVEAKTTSTVDVEPH 142
           GQGG RRKKK + +KIKEKL GS K +     G  APA G    T   A           
Sbjct: 163 GQGG-RRKKKSIKEKIKEKLPGSHKQEEQKQAGHTAPAAGTGTGTGTHAA---------- 222

Query: 143 HQDREKKGVMEKIREKLPGH 158
               EKKG++EKI+EKLPGH
Sbjct: 223 -GKHEKKGIVEKIKEKLPGH 225

[Close]

BLAST of MS020560 vs. ExPASy TrEMBL
Match: A0A6J1CYY9 (late embryogenesis abundant protein-like OS=Momordica charantia OX=3673 GN=LOC111015482 PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.3e-79
Identity = 156/158 (98.73%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MADVRDERGNPIQLTDERGNPVELTDEFGNPMHLTGVATAASKLESTGGDVGQTQLLPEP 60
           MADVRDERGNPIQLTDERGNPVELTDEFGNPMHLTGVATAASKLESTGGDVGQTQLLP+P
Sbjct: 1   MADVRDERGNPIQLTDERGNPVELTDEFGNPMHLTGVATAASKLESTGGDVGQTQLLPDP 60

Query: 61  VPDQAGSPRRSTSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSGKHKGEAAPAPGCHQ 120
            PDQAGSPRRSTSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSGKHKGEAAPAPGCHQ
Sbjct: 61  APDQAGSPRRSTSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSGKHKGEAAPAPGCHQ 120

Query: 121 YTTVEAKTTSTVDVEPHHQDREKKGVMEKIREKLPGHH 159
           YTTVEAKTTSTVDVEPHHQDREKKGVMEKIREKLPGHH
Sbjct: 121 YTTVEAKTTSTVDVEPHHQDREKKGVMEKIREKLPGHH 158

[Close]

BLAST of MS020560 vs. ExPASy TrEMBL
Match: A0A1S3CDP4 (late embryogenesis abundant protein-like OS=Cucumis melo OX=3656 GN=LOC103499700 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.6e-40
Identity = 111/170 (65.29%), Postives = 120/170 (70.59%), Query Frame = 0


Query: 1   MADVRDERGNPIQLTDERGNPVELTDEFGNPMHLTG-VATAASKLEST-----------G 60
           MA+VRDE GNP+QLTDERGNPV+LTDEFGNPMHLTG V T  SKL+ T           G
Sbjct: 1   MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMHLTGVVGTTPSKLDPTAPPSNLGPTTIG 60

Query: 61  GDVGQTQLLPEPVPDQAGSPRRSTSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSGKH 120
            +V QTQ    P      SPRRS+SSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSGKH
Sbjct: 61  ENVAQTQ---PPREAHDTSPRRSSSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSGKH 120

Query: 121 KGEAAPAPGCHQYTTVEAKTTSTVDVEPHHQDREKKGVMEKIREKLPGHH 159
           K       G H  T   A TT+   VE  HQ+  KKGVMEKI+EKLPGHH
Sbjct: 121 K-----EGGTHDST---ATTTTVTSVE--HQETGKKGVMEKIKEKLPGHH 157

[Close]

BLAST of MS020560 vs. ExPASy TrEMBL
Match: A0A0A0LPB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G249810 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.1e-38
Identity = 110/172 (63.95%), Postives = 121/172 (70.35%), Query Frame = 0


Query: 1   MADVRDERGNPIQLTDERGNPVELTDEFGNPMHLTG-VATAASKLE-------------S 60
           MA+VRDE GNP+QLTDERGNPV+LTDEFGNPM LTG V T  S L              +
Sbjct: 1   MANVRDEHGNPVQLTDERGNPVQLTDEFGNPMQLTGVVGTTPSNLHPTPPSNLHPTAVTT 60

Query: 61  TGGDVGQTQLLPEPVPDQAGSPRRSTSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSG 120
           TG +V QTQ  P  + D   SPRRS+SSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSG
Sbjct: 61  TGENVAQTQ-PPREIHD--ASPRRSSSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSG 120

Query: 121 KHKGEAAPAPGCHQYTTVEAKTTSTVDVEPHHQDREKKGVMEKIREKLPGHH 159
           KHK   A   G H     E+ TT+T  VE  H +  KKGVMEKI+EKLPGHH
Sbjct: 121 KHK--EAGTTGEHH----ESTTTTTTSVE--HHEPGKKGVMEKIKEKLPGHH 161

[Close]

BLAST of MS020560 vs. ExPASy TrEMBL
Match: A0A6J1JEI1 (late embryogenesis abundant protein-like OS=Cucurbita maxima OX=3661 GN=LOC111484299 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 9.1e-36
Identity = 112/213 (52.58%), Postives = 121/213 (56.81%), Query Frame = 0


Query: 1   MADVRDERGNPIQLTDERGNPVELTDEF-------------------------------- 60
           MA+VRDE GNP+QLTDERGNPV+LTDEF                                
Sbjct: 1   MANVRDEFGNPVQLTDERGNPVQLTDEFGNPVQLTGVATTGSHPVGNPVQMSEEFGNPMH 60

Query: 61  ----------------------GNPMHLTGVATAASKLESTGGD-VGQTQLLPEPVPDQA 120
                                 GNPMH TGVAT  SK  S+GGD VG+TQ L E      
Sbjct: 61  PTGVSTTGSKPVENPVQMNEELGNPMHPTGVATTGSKPVSSGGDVVGRTQPLRE---GHD 120

Query: 121 GSPRRSTSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSGKHKGEAAPAPGCHQYTTVE 159
            S  RS+SSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTG  K  G      G HQ TTV 
Sbjct: 121 ASLARSSSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGKHKEAGTTTTGAGHHQSTTV- 180

[Close]

BLAST of MS020560 vs. ExPASy TrEMBL
Match: A0A6J1FTT6 (late embryogenesis abundant protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448732 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.9e-34
Identity = 111/215 (51.63%), Postives = 121/215 (56.28%), Query Frame = 0


Query: 1   MADVRDERGNPIQLTDERGNPVELTDEF-------------------------------- 60
           MA+VRDE GNP+QLTDERGNPV+LTDEF                                
Sbjct: 1   MANVRDEFGNPVQLTDERGNPVQLTDEFGNPVQLTGVATTGSQPVGNPVQMSEELGNPMH 60

Query: 61  ----------------------GNPMHLTGVATAASKLESTGGD-VGQTQLLPEPVPDQA 120
                                 GNPMH TGVAT  SK  S+GGD VG+TQ L E      
Sbjct: 61  PTGVSTTGFSPVGNPVQMSEELGNPMHPTGVATTGSKPVSSGGDVVGRTQPLRE---GHD 120

Query: 121 GSPRRSTSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSGKHKGEAAPAPGC--HQYTT 159
            S  RS+SSSSSSSEDDGQGGRR+KKKGLTQKIKEKLTG  K  G      G   HQ TT
Sbjct: 121 ASLARSSSSSSSSSEDDGQGGRRKKKKGLTQKIKEKLTGKHKEAGTTTTTTGAGHHQSTT 180

[Close]

BLAST of MS020560 vs. TAIR 10
Match: AT2G21490.1 (dehydrin LEA )

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-27
Identity = 94/197 (47.72%), Postives = 111/197 (56.35%), Query Frame = 0


Query: 1   MADVRDERGNPIQLTDERGNP-VELTDEFGNPMHLTGVATAASK-LESTGGD-------- 60
           MAD+RDE+GNPI LTD +GNP V+LTDE GNPM+LTGV ++  +  EST  D        
Sbjct: 1   MADLRDEKGNPIHLTDTQGNPIVDLTDEHGNPMYLTGVVSSTPQHKESTTSDIAEHPTST 60

Query: 61  VGQTQLLPEPVPDQAGSP-----------------------------RRSTSSSSSSSED 120
           VG+T   P   P  AG+                              RRS SSSSSSSED
Sbjct: 61  VGETH--PAAAPAGAGAATAATATGVSAGTGATTTGQQHHGSLEEHLRRSGSSSSSSSED 120

Query: 121 DGQGGRRRKKKGLTQKIKEKLTGSGKHKGEAAPAPGCHQYTTVEAKTTSTVDVEPHHQDR 159
           DGQGGRR  KK + +KIKEK  GSGKHK E  PA      TT    TT     +PH    
Sbjct: 121 DGQGGRR--KKSIKEKIKEKF-GSGKHKDEQTPATA----TTTGPATTD----QPH---- 180

[Close]

BLAST of MS020560 vs. TAIR 10
Match: AT3G50980.1 (dehydrin xero 1 )

HSP 1 Score: 77.8 bits (190), Expect = 8.7e-15
Identity = 65/137 (47.45%), Postives = 74/137 (54.01%), Query Frame = 0


Query: 26  DEFGNPMHLT----GVATAASKLESTGGDVGQTQLLPEPVPDQAGSPRRSTSSSSSSSED 85
           D+FGNP   T    G A  A  +   GG               +G   RS SSSSSSSED
Sbjct: 18  DQFGNPFPATTGAYGTAGGAPAVAEGGG--------------LSGMLHRSGSSSSSSSED 77

Query: 86  DGQGGRRRKKKGLTQKIKEKLTGSGKHKGEAAPAPGCHQYTTVEAKTTSTVDVEPHHQDR 145
           DG GGRRRKKKG+T+KIKEKL   G H      + G    +T  A  T TV    HH   
Sbjct: 78  DGLGGRRRKKKGITEKIKEKL--PGHHDSNKTSSLG----STTTAYDTGTV----HH--- 127

Query: 146 EKKGVMEKIREKLPGHH 159
           EKKG+MEKI+EKLPG H
Sbjct: 138 EKKGMMEKIKEKLPGGH 127

[Close]

BLAST of MS020560 vs. TAIR 10
Match: AT4G39130.1 (Dehydrin family protein )

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-13
Identity = 65/170 (38.24%), Postives = 81/170 (47.65%), Query Frame = 0


Query: 1   MADVRDERGNPIQLTDERGNPVELTDEFGNPMHLTGVATAASKLES---TGGDVGQTQLL 60
           MAD++DERGNPI LTD  G P +L DEFGN MHLTGVAT    L+    TG       + 
Sbjct: 1   MADLKDERGNPIYLTDAHGEPAQLMDEFGNAMHLTGVATTVPHLKESSYTGPHPITAPVT 60

Query: 61  PEPVPDQAGSPRRSTSS---------SSSSSEDDGQGGRRRKKKGLTQKIKEKLTGSGKH 120
               P  A     S             +SS+E++G+G  R  K  +T + K KL   G  
Sbjct: 61  TTNTPHHAQPISVSHDPLQDHDLRWFGTSSTEENGEGVGR--KTNITDETKSKL---GVD 120

Query: 121 KGEAAPAPGCHQYTTVEAKTTSTVDVEPHHQDREKKGVMEKIREKLPGHH 159
           K  AA         TV    + +V         EKKG  +KI+EKL GHH
Sbjct: 121 KPSAA---------TVTGSGSGSV--------HEKKGFFKKIKEKLSGHH 148

[Close]

BLAST of MS020560 vs. TAIR 10
Match: AT5G66400.1 (Dehydrin family protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-10
Identity = 55/114 (48.25%), Postives = 62/114 (54.39%), Query Frame = 0


Query: 47  TGGDV---GQTQLLPEPVPDQAGSPRRSTSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLT 106
           TGG     GQ QL  E      G   RS S SSSSSEDDGQGGRR  KKG+TQKIKEKL 
Sbjct: 82  TGGGARHHGQEQLHKESGGGLGGMLHRSGSGSSSSSEDDGQGGRR--KKGITQKIKEKLP 141

Query: 107 GSGKHKGEAAPAPGCHQYTTVEAKTTSTVDVEPH-HQDREKKGVMEKIREKLPG 157
           G     G+A    G            S  D   +  +  EKKG+M+KI+EKLPG
Sbjct: 142 GHHDQSGQAQAMGG----------MGSGYDAGGYGGEHHEKKGMMDKIKEKLPG 183

[Close]

BLAST of MS020560 vs. TAIR 10
Match: AT5G66400.2 (Dehydrin family protein )

HSP 1 Score: 57.8 bits (138), Expect = 9.3e-09
Identity = 54/114 (47.37%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 47  TGGDV---GQTQLLPEPVPDQAGSPRRSTSSSSSSSEDDGQGGRRRKKKGLTQKIKEKLT 106
           TGG     GQ QL  E      G   RS S SSSSS DDGQGGRR  KKG+TQKIKEKL 
Sbjct: 82  TGGGARHHGQEQLHKESGGGLGGMLHRSGSGSSSSS-DDGQGGRR--KKGITQKIKEKLP 141

Query: 107 GSGKHKGEAAPAPGCHQYTTVEAKTTSTVDVEPH-HQDREKKGVMEKIREKLPG 157
           G     G+A    G            S  D   +  +  EKKG+M+KI+EKLPG
Sbjct: 142 GHHDQSGQAQAMGG----------MGSGYDAGGYGGEHHEKKGMMDKIKEKLPG 182

The following BLAST results are available for this feature:

BLAST of MS020560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146212.1	2.8e-79	98.73	late embryogenesis abundant protein-like [Momordica charantia]	[more]
XP_038902144.1	4.9e-44	70.73	late embryogenesis abundant protein-like isoform X2 [Benincasa hispida]	[more]
XP_038902143.1	1.2e-42	65.91	embryogenic cell protein 40-like isoform X1 [Benincasa hispida]	[more]
XP_008460975.1	7.3e-40	65.29	PREDICTED: late embryogenesis abundant protein-like [Cucumis melo]	[more]
XP_004150075.1	2.4e-38	63.95	embryogenic cell protein 40 [Cucumis sativus] >KGN61826.1 hypothetical protein C...	[more]

BLAST of MS020560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P21298	9.4e-30	48.13	Late embryogenesis abundant protein OS=Raphanus sativus OX=3726 PE=2 SV=1	[more]
Q96261	2.2e-26	47.72	Probable dehydrin LEA OS=Arabidopsis thaliana OX=3702 GN=LEA PE=2 SV=1	[more]
Q07322	3.8e-15	29.74	Embryogenic cell protein 40 OS=Daucus carota OX=4039 GN=ECP40 PE=1 SV=1	[more]
P25863	1.2e-13	47.45	Dehydrin Xero 1 OS=Arabidopsis thaliana OX=3702 GN=XERO1 PE=2 SV=2	[more]
P30287	2.0e-11	42.14	Dehydrin Rab25 OS=Oryza sativa subsp. japonica OX=39947 GN=RAB25 PE=2 SV=2	[more]

BLAST of MS020560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYY9	1.3e-79	98.73	late embryogenesis abundant protein-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A1S3CDP4	3.6e-40	65.29	late embryogenesis abundant protein-like OS=Cucumis melo OX=3656 GN=LOC103499700...	[more]
A0A0A0LPB7	1.1e-38	63.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G249810 PE=3 SV=1	[more]
A0A6J1JEI1	9.1e-36	52.58	late embryogenesis abundant protein-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FTT6	2.9e-34	51.63	late embryogenesis abundant protein-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of MS020560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21490.1	1.5e-27	47.72	dehydrin LEA	[more]
AT3G50980.1	8.7e-15	47.45	dehydrin xero 1	[more]
AT4G39130.1	6.2e-13	38.24	Dehydrin family protein	[more]
AT5G66400.1	1.0e-10	48.25	Dehydrin family protein	[more]
AT5G66400.2	9.3e-09	47.37	Dehydrin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000167	Dehydrin	PFAM	PF00257	Dehydrin	coord: 51..158 e-value: 2.9E-30 score: 105.9
IPR000167	Dehydrin	PANTHER	PTHR33346	DEHYDRIN XERO 2-RELATED	coord: 1..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..158
None	No IPR available	PANTHER	PTHR33346:SF5	DEHYDRIN XERO 2-RELATED	coord: 1..158
IPR030513	Dehydrin, conserved site	PROSITE	PS00315	DEHYDRIN_1	coord: 75..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020560.1	MS020560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009415	response to water