MS020558 (gene) Bitter gourd (TR) v1
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Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATATATTATCAGGATGGAAGGAGGAAGAGAATGGGTGAAATGGAAGACATCCATGAAAGGCTTCTGAGGGCAAACACCAAAGATTATGGAAGGTATGATCCAGCTCCAGCTTTTGTGAAGCCTCCTTTCAAGCTCATCCCCAACATATATTATCAGGATGGAAGGAGGAAGAGAATGGGTGAAATGGAAGACATCCATGAAAGGCTTCTGAGGGCAAACACCAAAGATTATGGAAGGTATGATCCAGCTCCAGCTTTTGTGAAGCCTCCTTTCAAGCTCATCCCCAAC ATATATTATCAGGATGGAAGGAGGAAGAGAATGGGTGAAATGGAAGACATCCATGAAAGGCTTCTGAGGGCAAACACCAAAGATTATGGAAGGTATGATCCAGCTCCAGCTTTTGTGAAGCCTCCTTTCAAGCTCATCCCCAAC IYYQDGRRKRMGEMEDIHERLLRANTKDYGRYDPAPAFVKPPFKLIPN Homology
BLAST of MS020558 vs. NCBI nr
Match: XP_022146128.1 (protein CASPARIAN STRIP INTEGRITY FACTOR 1 [Momordica charantia]) HSP 1 Score: 100.1 bits (248), Expect = 5.4e-18 Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 0
BLAST of MS020558 vs. NCBI nr
Match: XP_038902215.1 (protein CASPARIAN STRIP INTEGRITY FACTOR 1-like [Benincasa hispida]) HSP 1 Score: 89.4 bits (220), Expect = 9.4e-15 Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 0
BLAST of MS020558 vs. NCBI nr
Match: XP_011649242.1 (protein CASPARIAN STRIP INTEGRITY FACTOR 2 [Cucumis sativus] >KGN61823.1 hypothetical protein Csa_006235 [Cucumis sativus]) HSP 1 Score: 84.3 bits (207), Expect = 3.0e-13 Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 0
BLAST of MS020558 vs. NCBI nr
Match: XP_008460971.1 (PREDICTED: uncharacterized protein LOC103499698 [Cucumis melo] >KAA0045577.1 uncharacterized protein E6C27_scaffold243G00810 [Cucumis melo var. makuwa] >TYK28817.1 uncharacterized protein E5676_scaffold303G00190 [Cucumis melo var. makuwa]) HSP 1 Score: 80.1 bits (196), Expect = 5.7e-12 Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0
BLAST of MS020558 vs. NCBI nr
Match: KAG7010912.1 (Protein CASPARIAN STRIP INTEGRITY FACTOR 1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 78.2 bits (191), Expect = 2.2e-11 Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 0
BLAST of MS020558 vs. ExPASy Swiss-Prot
Match: Q84MD2 (Protein CASPARIAN STRIP INTEGRITY FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=CIF1 PE=1 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 1.7e-06 Identity = 22/31 (70.97%), Postives = 24/31 (77.42%), Query Frame = 0
BLAST of MS020558 vs. ExPASy Swiss-Prot
Match: O65684 (Protein CASPARIAN STRIP INTEGRITY FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=CIF2 PE=1 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 6.4e-06 Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 0
BLAST of MS020558 vs. ExPASy TrEMBL
Match: A0A6J1CXR3 (protein CASPARIAN STRIP INTEGRITY FACTOR 1 OS=Momordica charantia OX=3673 GN=LOC111015421 PE=4 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 2.6e-18 Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 0
BLAST of MS020558 vs. ExPASy TrEMBL
Match: A0A0A0LJ22 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G249780 PE=4 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13 Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 0
BLAST of MS020558 vs. ExPASy TrEMBL
Match: A0A5A7TUS0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00190 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 2.8e-12 Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0
BLAST of MS020558 vs. ExPASy TrEMBL
Match: A0A1S3CEV9 (uncharacterized protein LOC103499698 OS=Cucumis melo OX=3656 GN=LOC103499698 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 2.8e-12 Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0
BLAST of MS020558 vs. ExPASy TrEMBL
Match: A0A6J1JEM0 (protein CASPARIAN STRIP INTEGRITY FACTOR 1-like OS=Cucurbita maxima OX=3661 GN=LOC111484327 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11 Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 0
BLAST of MS020558 vs. TAIR 10
Match: AT2G16385.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 52.4 bits (124), Expect = 1.2e-07 Identity = 22/31 (70.97%), Postives = 24/31 (77.42%), Query Frame = 0
BLAST of MS020558 vs. TAIR 10
Match: AT4G34600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube growth; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16385.1); Has 17 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 50.4 bits (119), Expect = 4.5e-07 Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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