MS020546 (gene) Bitter gourd (TR) v1

Overview


Name	MS020546
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	aquaporin NIP1-1-like
Location	scaffold375: 1075331 .. 1075474 (-)
RNA-Seq Expression	MS020546
Synteny	MS020546

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTTGAGCAAAGACGGAGCTATCAATTTCTCAAGAATTTCAATGGTTTGGGATTTGGTTGTAACTGTTTTATCCTATTCTATTGGGTACATTTCCAATGGACATCTTAACCTTATTGTCACCATAGTATTCACCAATGTTAGG

mRNA sequence

GATTTGAGCAAAGACGGAGCTATCAATTTCTCAAGAATTTCAATGGTTTGGGATTTGGTTGTAACTGTTTTATCCTATTCTATTGGGTACATTTCCAATGGACATCTTAACCTTATTGTCACCATAGTATTCACCAATGTTAGG

Coding sequence (CDS)

GATTTGAGCAAAGACGGAGCTATCAATTTCTCAAGAATTTCAATGGTTTGGGATTTGGTTGTAACTGTTTTATCCTATTCTATTGGGTACATTTCCAATGGACATCTTAACCTTATTGTCACCATAGTATTCACCAATGTTAGG

Protein sequence

DLSKDGAINFSRISMVWDLVVTVLSYSIGYISNGHLNLIVTIVFTNVR

Homology

[Close]

BLAST of MS020546 vs. NCBI nr
Match: XP_023518201.1 (aquaporin NIP1-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 52.8 bits (125), Expect = 9.8e-04
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 1   DLSKDGAINFSRISMVWDLVVTVLSYSIGYISNGHLNLIVTIVFTNVR 49
           +LSKDG I F  IS+VW LVV V+ YS+G+IS  H N  VTI F   R
Sbjct: 56  NLSKDGVITFPGISIVWGLVVMVMIYSVGHISGAHFNPAVTISFAITR 103

[Close]

BLAST of MS020546 vs. NCBI nr
Match: XP_023003144.1 (aquaporin NIP1-1-like [Cucurbita maxima])

HSP 1 Score: 52.8 bits (125), Expect = 9.8e-04
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 1   DLSKDGAINFSRISMVWDLVVTVLSYSIGYISNGHLNLIVTIVFTNVR 49
           +LSKDG I F  IS+VW LVV V+ YS+G+IS  H N  VTI F   R
Sbjct: 56  NLSKDGVITFPGISIVWGLVVMVMIYSVGHISGAHFNPAVTISFAITR 103

[Close]

BLAST of MS020546 vs. NCBI nr
Match: KAG7026507.1 (Aquaporin NIP1-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 52.8 bits (125), Expect = 9.8e-04
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 1   DLSKDGAINFSRISMVWDLVVTVLSYSIGYISNGHLNLIVTIVFTNVR 49
           +LSKDG I F  IS+VW LVV V+ YS+G+IS  H N  VTI F   R
Sbjct: 325 NLSKDGVITFPGISIVWGLVVMVMIYSVGHISGAHFNPAVTISFAITR 372

[Close]

BLAST of MS020546 vs. NCBI nr
Match: KAG6594523.1 (Aquaporin NIP1-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 52.8 bits (125), Expect = 9.8e-04
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 1   DLSKDGAINFSRISMVWDLVVTVLSYSIGYISNGHLNLIVTIVFTNVR 49
           +LSKDG I F  IS+VW LVV V+ YS+G+IS  H N  VTI F   R
Sbjct: 323 NLSKDGVITFPGISIVWGLVVMVMIYSVGHISGAHFNPAVTISFAITR 370

[Close]

BLAST of MS020546 vs. NCBI nr
Match: XP_022926570.1 (aquaporin NIP1-1-like [Cucurbita moschata])

HSP 1 Score: 52.8 bits (125), Expect = 9.8e-04
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 1   DLSKDGAINFSRISMVWDLVVTVLSYSIGYISNGHLNLIVTIVFTNVR 49
           +LSKDG I F  IS+VW LVV V+ YS+G+IS  H N  VTI F   R
Sbjct: 56  NLSKDGVITFPGISIVWGLVVMVMIYSVGHISGAHFNPAVTISFAITR 103

[Close]

BLAST of MS020546 vs. ExPASy Swiss-Prot
Match: P08995 (Nodulin-26 OS=Glycine max OX=3847 PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 1.2e-04
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 8   INFSRISMVWDLVVTVLSYSIGYISNGHLNLIVTIVFTNVR 49
           I F  I++VW LV+TVL Y++G+IS GH N  VTI F + R
Sbjct: 68  ITFPGIAIVWGLVLTVLVYTVGHISGGHFNPAVTIAFASTR 108

[Close]

BLAST of MS020546 vs. ExPASy TrEMBL
Match: A0A6J1KSG1 (aquaporin NIP1-1-like OS=Cucurbita maxima OX=3661 GN=LOC111496846 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.7e-04
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 1   DLSKDGAINFSRISMVWDLVVTVLSYSIGYISNGHLNLIVTIVFTNVR 49
           +LSKDG I F  IS+VW LVV V+ YS+G+IS  H N  VTI F   R
Sbjct: 56  NLSKDGVITFPGISIVWGLVVMVMIYSVGHISGAHFNPAVTISFAITR 103

[Close]

BLAST of MS020546 vs. ExPASy TrEMBL
Match: A0A6J1ELH3 (aquaporin NIP1-1-like OS=Cucurbita moschata OX=3662 GN=LOC111433672 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.7e-04
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 1   DLSKDGAINFSRISMVWDLVVTVLSYSIGYISNGHLNLIVTIVFTNVR 49
           +LSKDG I F  IS+VW LVV V+ YS+G+IS  H N  VTI F   R
Sbjct: 56  NLSKDGVITFPGISIVWGLVVMVMIYSVGHISGAHFNPAVTISFAITR 103

[Close]

BLAST of MS020546 vs. TAIR 10
Match: AT4G19030.1 (NOD26-like major intrinsic protein 1 )

HSP 1 Score: 41.6 bits (96), Expect = 2.1e-04
Identity = 18/46 (39.13%), Postives = 28/46 (60.87%), Query Frame = 0


Query: 1   DLSKDGAINFSRISMVWDLVVTVLSYSIGYISNGHLNLIVTIVFTN 47
           ++  D  +    I++VW L + VL YS+G+IS  H+N  VTI F +
Sbjct: 78  NMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFAS 123

[Close]

BLAST of MS020546 vs. TAIR 10
Match: AT4G18910.1 (NOD26-like intrinsic protein 1;2 )

HSP 1 Score: 40.4 bits (93), Expect = 4.7e-04
Identity = 20/42 (47.62%), Postives = 26/42 (61.90%), Query Frame = 0


Query: 5   DGAINFSRISMVWDLVVTVLSYSIGYISNGHLNLIVTIVFTN 47
           D A+    I++VW L V VL YS+G+IS  H N  VTI F +
Sbjct: 79  DKAVTLPGIAIVWGLTVMVLVYSLGHISGAHFNPAVTIAFAS 120

The following BLAST results are available for this feature:

BLAST of MS020546 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518201.1	9.8e-04	56.25	aquaporin NIP1-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_023003144.1	9.8e-04	56.25	aquaporin NIP1-1-like [Cucurbita maxima]	[more]
KAG7026507.1	9.8e-04	56.25	Aquaporin NIP1-2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6594523.1	9.8e-04	56.25	Aquaporin NIP1-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022926570.1	9.8e-04	56.25	aquaporin NIP1-1-like [Cucurbita moschata]	[more]

BLAST of MS020546 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P08995	1.2e-04	53.66	Nodulin-26 OS=Glycine max OX=3847 PE=1 SV=2	[more]

BLAST of MS020546 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KSG1	4.7e-04	56.25	aquaporin NIP1-1-like OS=Cucurbita maxima OX=3661 GN=LOC111496846 PE=3 SV=1	[more]
A0A6J1ELH3	4.7e-04	56.25	aquaporin NIP1-1-like OS=Cucurbita moschata OX=3662 GN=LOC111433672 PE=3 SV=1	[more]

BLAST of MS020546 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19030.1	2.1e-04	39.13	NOD26-like major intrinsic protein 1	[more]
AT4G18910.1	4.7e-04	47.62	NOD26-like intrinsic protein 1;2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000425	Major intrinsic protein	PFAM	PF00230	MIP	coord: 7..45 e-value: 7.2E-5 score: 22.6
IPR023271	Aquaporin-like	GENE3D	1.20.1080.10	Glycerol uptake facilitator protein.	coord: 1..48 e-value: 1.3E-6 score: 29.6
IPR023271	Aquaporin-like	SUPERFAMILY	81338	Aquaporin-like	coord: 5..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020546.1	MS020546.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0015267	channel activity