MS020504 (gene) Bitter gourd (TR) v1

Overview
NameMS020504
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold375: 731975 .. 732244 (+)
RNA-Seq ExpressionMS020504
SyntenyMS020504
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CACTGCAAAATCAAGCAAAAAAAAAGAGCTTCAAAAATGTCAGCAATGGTGGAGACATGGATGAGCGAGCTGGGGAAGTGGAAGGACAGAGTTCAAGCTCAAGCTCAAGGGAAGACGAAGAACAACAACCCATTAATCTTCCCCAAATCCAAACAGGGGAATCGGGAGCAGCCTCAAAACCAGATTTCGCCGGAAGCAGATTCCGACCACGCAGAATCTACCATGTCCGAATCCACTGTCTGTTTGCTAATGGATCGCTTTGCTCCCTTG

mRNA sequence

CACTGCAAAATCAAGCAAAAAAAAAGAGCTTCAAAAATGTCAGCAATGGTGGAGACATGGATGAGCGAGCTGGGGAAGTGGAAGGACAGAGTTCAAGCTCAAGCTCAAGGGAAGACGAAGAACAACAACCCATTAATCTTCCCCAAATCCAAACAGGGGAATCGGGAGCAGCCTCAAAACCAGATTTCGCCGGAAGCAGATTCCGACCACGCAGAATCTACCATGTCCGAATCCACTGTCTGTTTGCTAATGGATCGCTTTGCTCCCTTG

Coding sequence (CDS)

CACTGCAAAATCAAGCAAAAAAAAAGAGCTTCAAAAATGTCAGCAATGGTGGAGACATGGATGAGCGAGCTGGGGAAGTGGAAGGACAGAGTTCAAGCTCAAGCTCAAGGGAAGACGAAGAACAACAACCCATTAATCTTCCCCAAATCCAAACAGGGGAATCGGGAGCAGCCTCAAAACCAGATTTCGCCGGAAGCAGATTCCGACCACGCAGAATCTACCATGTCCGAATCCACTGTCTGTTTGCTAATGGATCGCTTTGCTCCCTTG

Protein sequence

HCKIKQKKRASKMSAMVETWMSELGKWKDRVQAQAQGKTKNNNPLIFPKSKQGNREQPQNQISPEADSDHAESTMSESTVCLLMDRFAPL
Homology
BLAST of MS020504 vs. NCBI nr
Match: KGN61756.1 (hypothetical protein Csa_006080 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 4.5e-10
Identity = 47/92 (51.09%), Postives = 60/92 (65.22%), Query Frame = 0

Query: 1   HCKIKQKKRASKMSAMVETWMSELGKWKDRVQAQAQGKTKNNNPLIFPKSKQGNREQ-PQ 60
           H   ++K    KMSAMVE+WM+ELGKW++RV+AQ      NN   + PKSKQ   +   Q
Sbjct: 25  HFTQRKKNNKVKMSAMVESWMNELGKWRNRVEAQ----DNNNKKPLMPKSKQLQTDHFKQ 84

Query: 61  NQISPEADSDHAE-STMSESTVCLLMDRFAPL 91
              +  ADSD  E S +SEST+CLL+DRFAPL
Sbjct: 85  PAKTHMADSDDTETSVLSESTICLLIDRFAPL 112

BLAST of MS020504 vs. NCBI nr
Match: KAG6571144.1 (hypothetical protein SDJN03_30059, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.6 bits (148), Expect = 4.0e-06
Identity = 39/77 (50.65%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 13 MSAMVETWMSELGKWKDRVQAQAQGKTKNNNPLIFPKSKQGNREQPQNQISPEADSDHAE 72
          MSAMVE+WMSELGKWK+RV+AQ     K   PL+ PKS Q      QN +      D   
Sbjct: 1  MSAMVESWMSELGKWKNRVEAQ-----KKKKPLM-PKSNQ----FLQNDVVSAHSDDTET 60

Query: 73 STMSESTVCLLMDRFAP 90
              E+T+CLL+DRFAP
Sbjct: 61 ERERETTICLLIDRFAP 67

BLAST of MS020504 vs. NCBI nr
Match: KAG6605111.1 (hypothetical protein SDJN03_02428, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.8 bits (138), Expect = 5.7e-05
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0

Query: 13 MSAMVETWMSELGKWKDRVQAQAQGKTKNNNPLIFPKSK---QGNREQPQNQISPEADSD 72
          M+AMVE+WMSELGKWK+RV+AQ         PL+ PKSK   Q + ++ +N +   ADSD
Sbjct: 1  MAAMVESWMSELGKWKNRVEAQ------KKKPLM-PKSKLCHQRDLKESENNLVISADSD 60

Query: 73 HAESTMSESTVCLLMD 86
            E+T+S+ST+  + D
Sbjct: 61 DREATLSDSTILCVND 69

BLAST of MS020504 vs. NCBI nr
Match: KAG8637634.1 (hypothetical protein MANES_15G145900v8 [Manihot esculenta] >OAY29452.1 hypothetical protein MANES_15G145900v8 [Manihot esculenta])

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 0

Query: 13 MSAMVETWMSELGKWKDRVQAQAQGKTKNNNPLIFPKSKQG----NREQPQNQISPEADS 72
          M+A+VETW++EL K K++V  +         P +F    +G      E+ + +   E+  
Sbjct: 1  MAAVVETWVTELAKLKEKVGPK--------KPFLFISKARGVVVEEEEEEEREAEKESKV 60

Query: 73 DHAESTMSESTVCLLMDRFAPL 91
           H E+TMSE+TVC+LMDRFAPL
Sbjct: 61 VHRETTMSEATVCMLMDRFAPL 74

BLAST of MS020504 vs. NCBI nr
Match: OIV99452.1 (hypothetical protein TanjilG_17262 [Lupinus angustifolius])

HSP 1 Score: 54.7 bits (130), Expect = 4.8e-04
Identity = 37/78 (47.44%), Postives = 47/78 (60.26%), Query Frame = 0

Query: 13 MSAMVETWMSELGKWKDRVQAQAQGKTKNNNPLI-FPKSKQGNREQPQNQISPEADSDHA 72
          MSAMVE W+ EL K  ++V A+         PL+  PK KQG+  + +     E+  D+ 
Sbjct: 1  MSAMVEVWVGELTKLTEKVLAR--------KPLMKLPKEKQGSEVEIKEAQKKESVGDN- 60

Query: 73 ESTMSESTVCLLMDRFAP 90
           STMSESTVCLLMDRF P
Sbjct: 61 -STMSESTVCLLMDRFVP 68

BLAST of MS020504 vs. ExPASy TrEMBL
Match: A0A0A0LP24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G237740 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.2e-10
Identity = 47/92 (51.09%), Postives = 60/92 (65.22%), Query Frame = 0

Query: 1   HCKIKQKKRASKMSAMVETWMSELGKWKDRVQAQAQGKTKNNNPLIFPKSKQGNREQ-PQ 60
           H   ++K    KMSAMVE+WM+ELGKW++RV+AQ      NN   + PKSKQ   +   Q
Sbjct: 25  HFTQRKKNNKVKMSAMVESWMNELGKWRNRVEAQ----DNNNKKPLMPKSKQLQTDHFKQ 84

Query: 61  NQISPEADSDHAE-STMSESTVCLLMDRFAPL 91
              +  ADSD  E S +SEST+CLL+DRFAPL
Sbjct: 85  PAKTHMADSDDTETSVLSESTICLLIDRFAPL 112

BLAST of MS020504 vs. ExPASy TrEMBL
Match: A0A2C9UFS7 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G145900 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.2e-05
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 0

Query: 13 MSAMVETWMSELGKWKDRVQAQAQGKTKNNNPLIFPKSKQG----NREQPQNQISPEADS 72
          M+A+VETW++EL K K++V  +         P +F    +G      E+ + +   E+  
Sbjct: 1  MAAVVETWVTELAKLKEKVGPK--------KPFLFISKARGVVVEEEEEEEREAEKESKV 60

Query: 73 DHAESTMSESTVCLLMDRFAPL 91
           H E+TMSE+TVC+LMDRFAPL
Sbjct: 61 VHRETTMSEATVCMLMDRFAPL 74

BLAST of MS020504 vs. ExPASy TrEMBL
Match: A0A4P1R168 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_17262 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-04
Identity = 37/78 (47.44%), Postives = 47/78 (60.26%), Query Frame = 0

Query: 13 MSAMVETWMSELGKWKDRVQAQAQGKTKNNNPLI-FPKSKQGNREQPQNQISPEADSDHA 72
          MSAMVE W+ EL K  ++V A+         PL+  PK KQG+  + +     E+  D+ 
Sbjct: 1  MSAMVEVWVGELTKLTEKVLAR--------KPLMKLPKEKQGSEVEIKEAQKKESVGDN- 60

Query: 73 ESTMSESTVCLLMDRFAP 90
           STMSESTVCLLMDRF P
Sbjct: 61 -STMSESTVCLLMDRFVP 68

BLAST of MS020504 vs. ExPASy TrEMBL
Match: A0A2N9EQU8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5035 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-04
Identity = 35/81 (43.21%), Postives = 47/81 (58.02%), Query Frame = 0

Query: 13 MSAMVETWMSELGKWKDRVQAQAQGKTKNNNPLIFPKSKQGNREQPQNQISPEADSDHAE 72
          MSA+V+TW+ EL K K++V      K K+  PL   K+K G  E+ +   S E      E
Sbjct: 1  MSAVVQTWIGELAKLKEKV------KVKSRKPLFSSKAKGGEVEEEKEAASMEGRMVQRE 60

Query: 73 ST----MSESTVCLLMDRFAP 90
          +     +SE+TVCLLMDRFAP
Sbjct: 61 NNNSNMLSEATVCLLMDRFAP 75

BLAST of MS020504 vs. ExPASy TrEMBL
Match: A0A0B2P9Z2 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_029731 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.2e-04
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 0

Query: 13 MSAMVETWMSELGKWKDRVQAQAQGKTKNNNPLIFPKSKQG---NREQPQNQISPEADSD 72
          MSAMVE W+ EL K +++V A+         P +  K+K+G   N+E+ + Q +     D
Sbjct: 1  MSAMVEVWVGELTKLREKVLAR--------KPFLLSKAKEGSERNQEEKETQ-TAVVKRD 60

Query: 73 HAESTMSESTVCLLMDRFAP 90
              TMSE+TVCLLMDRF P
Sbjct: 61 TTNGTMSEATVCLLMDRFVP 71

BLAST of MS020504 vs. TAIR 10
Match: AT2G15960.1 (unknown protein; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 4.7e-05
Identity = 25/77 (32.47%), Postives = 43/77 (55.84%), Query Frame = 0

Query: 13 MSAMVETWMSELGKWKDRVQAQAQGKTKNNNPLIFPKSKQGNREQPQNQISPEADSDHAE 72
          M+  +E W+ E+ K  +++  +     + N+  +  K +QG+ E+ +  I+ +    +  
Sbjct: 1  MAKAMELWVGEMKKMSEKINTRNPLMQRKNSTSVVSKQQQGSEEE-RGLINQKIREKNEA 60

Query: 73 STMSESTVCLLMDRFAP 90
           TMSE TVCLLMDRF P
Sbjct: 61 VTMSELTVCLLMDRFVP 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN61756.14.5e-1051.09hypothetical protein Csa_006080 [Cucumis sativus][more]
KAG6571144.14.0e-0650.65hypothetical protein SDJN03_30059, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6605111.15.7e-0547.37hypothetical protein SDJN03_02428, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG8637634.11.3e-0440.24hypothetical protein MANES_15G145900v8 [Manihot esculenta] >OAY29452.1 hypotheti... [more]
OIV99452.14.8e-0447.44hypothetical protein TanjilG_17262 [Lupinus angustifolius][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LP242.2e-1051.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G237740 PE=4 SV=1[more]
A0A2C9UFS76.2e-0540.24Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G145900 PE=4 SV=... [more]
A0A4P1R1682.3e-0447.44Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_17262 PE=4 S... [more]
A0A2N9EQU82.3e-0443.21Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5035 PE=4 SV=1[more]
A0A0B2P9Z25.2e-0442.50Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_029731 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G15960.14.7e-0532.47unknown protein; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..78
NoneNo IPR availablePANTHERPTHR36346EXPRESSED PROTEINcoord: 13..90
NoneNo IPR availablePANTHERPTHR36346:SF2EXPRESSED PROTEINcoord: 13..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS020504.1MS020504.1mRNA