MS020474 (gene) Bitter gourd (TR) v1

Overview


Name	MS020474
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Nudix hydrolase domain-containing protein
Location	scaffold375: 471221 .. 471869 (-)
RNA-Seq Expression	MS020474
Synteny	MS020474

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GACAACGCGCCGCCGCCGCCGCCGCCGACTGTAGGCGTAGCAGTCTTCCTTTTCAAAGGAAAATCCGTGCTCATGGGCCGCCGCCGCGTCCCCCACGGAGACTCCACATTCGCCGTCCCCGGTGGCCACCTCGAGTTCGGTTCGTCCCATTACTCTTCTCTTTCCCTCTTTTTCCCATTCAGATTTCCGATTCTGCTTTTAGTCTCTACTTCCAGTTCCAGCCCTAATTCTCAACCAAAATCGGTTTAATCTCTTTAAACTACGGCTTAATCGGACAGCCATTTGTGGATTTGCTTCAAACTCCACGGATTCTGCGGAAATCTGAAATCAAACCTTCCGTTTACCAATCTTTTCAGGGGAGAGTTTCGAAGAGTGTGCGGCGAGGGAATTGAAGGAGGAGACCGGTTTGGACATCGAGAAAATCGAGTTCATTACTGCGACGAACAATCTGTTTCTGGACAATCCGAGTCCGTCGCATTACGTGGTGATCTTCATGCGCGCAACATTGGCGGATCCGGACCAGATTGCTCGGAATTTGGAGCCGAAGAAGTGCGATGGCTGGGACTGGTATGAATGGGATCGTCTTCCTCAACCTCTCTTTAGCCCTCTTCTGAATTTTGTTAACACTGGCTTTGATCCATTCCCTAAA

mRNA sequence

GACAACGCGCCGCCGCCGCCGCCGCCGACTGTAGGCGTAGCAGTCTTCCTTTTCAAAGGAAAATCCGTGCTCATGGGCCGCCGCCGCGTCCCCCACGGAGACTCCACATTCGCCGTCCCCGGTGGCCACCTCGAGTTCGGGGAGAGTTTCGAAGAGTGTGCGGCGAGGGAATTGAAGGAGGAGACCGGTTTGGACATCGAGAAAATCGAGTTCATTACTGCGACGAACAATCTGTTTCTGGACAATCCGAGTCCGTCGCATTACGTGGTGATCTTCATGCGCGCAACATTGGCGGATCCGGACCAGATTGCTCGGAATTTGGAGCCGAAGAAGTGCGATGGCTGGGACTGGTATGAATGGGATCGTCTTCCTCAACCTCTCTTTAGCCCTCTTCTGAATTTTGTTAACACTGGCTTTGATCCATTCCCTAAA

Coding sequence (CDS)

GACAACGCGCCGCCGCCGCCGCCGCCGACTGTAGGCGTAGCAGTCTTCCTTTTCAAAGGAAAATCCGTGCTCATGGGCCGCCGCCGCGTCCCCCACGGAGACTCCACATTCGCCGTCCCCGGTGGCCACCTCGAGTTCGGGGAGAGTTTCGAAGAGTGTGCGGCGAGGGAATTGAAGGAGGAGACCGGTTTGGACATCGAGAAAATCGAGTTCATTACTGCGACGAACAATCTGTTTCTGGACAATCCGAGTCCGTCGCATTACGTGGTGATCTTCATGCGCGCAACATTGGCGGATCCGGACCAGATTGCTCGGAATTTGGAGCCGAAGAAGTGCGATGGCTGGGACTGGTATGAATGGGATCGTCTTCCTCAACCTCTCTTTAGCCCTCTTCTGAATTTTGTTAACACTGGCTTTGATCCATTCCCTAAA

Protein sequence

DNAPPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPKKCDGWDWYEWDRLPQPLFSPLLNFVNTGFDPFPK

Homology

[Close]

BLAST of MS020474 vs. NCBI nr
Match: XP_022148636.1 (geranyl diphosphate phosphohydrolase-like [Momordica charantia])

HSP 1 Score: 308.9 bits (790), Expect = 2.3e-80
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   DNAPPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKE 60
           DN PPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKE
Sbjct: 2   DNPPPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKE 61

Query: 61  ETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPKKCDGWDWYEW 120
           ETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEP+KCDGWDWYEW
Sbjct: 62  ETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPEKCDGWDWYEW 121

Query: 121 DRLPQPLFSPLLNFVNTGFDPFPK 145
           DRLPQPLFSPLLNFVNTGFDPFPK
Sbjct: 122 DRLPQPLFSPLLNFVNTGFDPFPK 145

[Close]

BLAST of MS020474 vs. NCBI nr
Match: XP_018817359.1 (geranyl diphosphate phosphohydrolase [Juglans regia] >KAF5450131.1 hypothetical protein F2P56_030506 [Juglans regia])

HSP 1 Score: 226.1 bits (575), Expect = 1.9e-55
Identity = 99/135 (73.33%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 9   PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEK 68
           P VGVAVFL  GK+VL+GRRR   GDSTFA+PGGHLEFGESFEECAARELKEETGLDI+K
Sbjct: 6   PRVGVAVFLLSGKAVLLGRRRSSIGDSTFALPGGHLEFGESFEECAARELKEETGLDIDK 65

Query: 69  IEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPKKCDGWDWYEWDRLPQPLF 128
           +E++T TN LFL+ P PSHYV IFMRA LADP+Q+ +NLEP+KCDGWDWY+WD LP+PLF
Sbjct: 66  VEYLTVTNTLFLEEPKPSHYVTIFMRAFLADPNQVPQNLEPQKCDGWDWYDWDNLPKPLF 125

Query: 129 SPLLNFVNTGFDPFP 144
            PL   V  G++PFP
Sbjct: 126 WPLEKMVQEGYNPFP 140

[Close]

BLAST of MS020474 vs. NCBI nr
Match: XP_024196843.1 (geranyl diphosphate phosphohydrolase [Rosa chinensis] >PRQ40454.1 putative hydrolase [Rosa chinensis] >QLI58097.1 nudix hydrolase 1-3 [Rosa hybrid cultivar])

HSP 1 Score: 225.3 bits (573), Expect = 3.3e-55
Identity = 100/143 (69.93%), Postives = 114/143 (79.72%), Query Frame = 0


Query: 1   DNAPPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKE 60
           +N    P P VGV VFL +GK+VL+GRRR   GDSTFA+PGGHLEFGE FEECAARELKE
Sbjct: 2   ENGASSPVPRVGVVVFLLRGKTVLLGRRRSSIGDSTFALPGGHLEFGEGFEECAARELKE 61

Query: 61  ETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPKKCDGWDWYEW 120
           ETGLD++KIEF+T TNNLFLD P P+HYV IFMRA L DPDQ+ + +EP KCDGW WYEW
Sbjct: 62  ETGLDLDKIEFVTVTNNLFLDEPKPAHYVTIFMRAVLKDPDQVPQTVEPDKCDGWGWYEW 121

Query: 121 DRLPQPLFSPLLNFVNTGFDPFP 144
           D LP+PLF PL   V +GF PFP
Sbjct: 122 DDLPKPLFWPLEKMVQSGFSPFP 144

[Close]

BLAST of MS020474 vs. NCBI nr
Match: XP_042978438.1 (geranyl diphosphate phosphohydrolase-like [Carya illinoinensis] >KAG6654833.1 hypothetical protein CIPAW_05G172700 [Carya illinoinensis] >KAG6713735.1 hypothetical protein I3842_05G168300 [Carya illinoinensis] >KAG7979894.1 hypothetical protein I3843_05G153500 [Carya illinoinensis])

HSP 1 Score: 224.2 bits (570), Expect = 7.4e-55
Identity = 98/135 (72.59%), Postives = 114/135 (84.44%), Query Frame = 0


Query: 9   PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEK 68
           P VGVAVFL +GK+VL+GRRR   GDSTFA+PGGHLEFGESFEECAARELKEETGLDI+K
Sbjct: 6   PRVGVAVFLLRGKAVLLGRRRSSIGDSTFALPGGHLEFGESFEECAARELKEETGLDIDK 65

Query: 69  IEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPKKCDGWDWYEWDRLPQPLF 128
           +E++T TN LFL+ P PSHYV IFMRA L DP+Q  +NLEP+KCDGWDWY+WD LP+PLF
Sbjct: 66  VEYLTVTNTLFLEEPKPSHYVTIFMRAFLPDPNQAPQNLEPQKCDGWDWYDWDNLPKPLF 125

Query: 129 SPLLNFVNTGFDPFP 144
            PL   V  G++PFP
Sbjct: 126 RPLEKMVQEGYNPFP 140

[Close]

BLAST of MS020474 vs. NCBI nr
Match: XP_041012739.1 (nudix hydrolase 1 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 223.0 bits (567), Expect = 1.6e-54
Identity = 98/135 (72.59%), Postives = 113/135 (83.70%), Query Frame = 0


Query: 9   PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEK 68
           P VGVAVFL  GK+VL+GRRR   GDSTFA+PGGHLEFGESFEECAARELKEETGLDI+K
Sbjct: 6   PRVGVAVFLLSGKAVLLGRRRSSIGDSTFALPGGHLEFGESFEECAARELKEETGLDIDK 65

Query: 69  IEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPKKCDGWDWYEWDRLPQPLF 128
           +E++T TN LFL+ P PSHYV IFMRA L DP+Q  +NLEP+KCDGWDWY+WD LP+PLF
Sbjct: 66  VEYLTVTNTLFLEEPKPSHYVTIFMRAFLTDPNQAPQNLEPQKCDGWDWYDWDNLPKPLF 125

Query: 129 SPLLNFVNTGFDPFP 144
            PL   V  G++PFP
Sbjct: 126 WPLEKMVQEGYNPFP 140

[Close]

BLAST of MS020474 vs. ExPASy Swiss-Prot
Match: M4I1C6 (Geranyl diphosphate phosphohydrolase OS=Rosa hybrid cultivar OX=128735 GN=NUDIX1 PE=1 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.0e-50
Identity = 91/133 (68.42%), Postives = 104/133 (78.20%), Query Frame = 0


Query: 11  VGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIE 70
           V V V L +G++VL+GRRR   GDSTF++P GHLEFGESFEECAARELKEET LDI KIE
Sbjct: 17  VAVVVCLLRGQNVLLGRRRSSLGDSTFSLPSGHLEFGESFEECAARELKEETDLDIGKIE 76

Query: 71  FITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPKKCDGWDWYEWDRLPQPLFSP 130
            +T TNNLFLD   PS YV +FMRA LADP Q  +N+EP+ CDGW WYEWD LP+PLF P
Sbjct: 77  LLTVTNNLFLDEAKPSQYVAVFMRAVLADPRQEPQNIEPEFCDGWGWYEWDNLPKPLFWP 136

Query: 131 LLNFVNTGFDPFP 144
           L N V  GF+PFP
Sbjct: 137 LDNVVQDGFNPFP 149

[Close]

BLAST of MS020474 vs. ExPASy Swiss-Prot
Match: Q9CA40 (Nudix hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=NUDT1 PE=1 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.8e-48
Identity = 82/134 (61.19%), Postives = 105/134 (78.36%), Query Frame = 0


Query: 9   PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEK 68
           P V V VF+  G S+L+GRRR   G+STFA+PGGHLEFGESFEECAARE+ EETGL IEK
Sbjct: 8   PRVAVVVFILNGNSILLGRRRSSIGNSTFALPGGHLEFGESFEECAAREVMEETGLKIEK 67

Query: 69  IEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPKKCDGWDWYEWDRLPQPLF 128
           ++ +T TNN+F + P+PSHYV + +RA L DP Q  +N+EP+KC+GWDWY+W+ LP+PLF
Sbjct: 68  MKLLTVTNNVFKEAPTPSHYVSVSIRAVLVDPSQEPKNMEPEKCEGWDWYDWENLPKPLF 127

Query: 129 SPLLNFVNTGFDPF 143
            PL     +GF+PF
Sbjct: 128 WPLEKLFGSGFNPF 141

[Close]

BLAST of MS020474 vs. ExPASy Swiss-Prot
Match: Q8BG93 (Nucleotide triphosphate diphosphatase NUDT15 OS=Mus musculus OX=10090 GN=Nudt15 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.0e-22
Identity = 58/147 (39.46%), Postives = 83/147 (56.46%), Query Frame = 0


Query: 2   NAPPPPPPTVGVAVFLFK---GKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAAREL 61
           NA P   P VGV V +      + VL+G+R+   G  +F +PGGHLEFGE++EECA RE 
Sbjct: 4   NAEPRRRPGVGVGVVVLSCEHPRCVLLGKRKGSFGAGSFQLPGGHLEFGETWEECAQRET 63

Query: 62  KEETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATL-ADPDQIARNLEPKKCDGWDW 121
            EE GL ++ + F +  N+ F++  +  HYV I M+  +    D   RN+EP+K + W+W
Sbjct: 64  WEEAGLHLKNVCFASVVNS-FVEKEN-YHYVTILMKGEVDMTHDSEPRNMEPEKNESWEW 123

Query: 122 YEWDRLP--QPLFSPLLNFVNTGFDPF 143
             W+  P    LF  L      G+DPF
Sbjct: 124 VPWEEFPPLDQLFWALRCLKEQGYDPF 148

[Close]

BLAST of MS020474 vs. ExPASy Swiss-Prot
Match: Q9NV35 (Nucleotide triphosphate diphosphatase NUDT15 OS=Homo sapiens OX=9606 GN=NUDT15 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.2e-21
Identity = 55/140 (39.29%), Postives = 80/140 (57.14%), Query Frame = 0


Query: 9   PTVGVAVFLFKGK---SVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLD 68
           P VGV V +   K    VL+G+R+   G  +F +PGGHLEFGE++EECA RE  EE  L 
Sbjct: 12  PGVGVGVVVTSCKHPRCVLLGKRKGSVGAGSFQLPGGHLEFGETWEECAQRETWEEAALH 71

Query: 69  IEKIEFITATNNLFLDNPSPSHYVVIFMRATL-ADPDQIARNLEPKKCDGWDWYEWDRLP 128
           ++ + F +  N+ F++  +  HYV I M+  +    D   +N+EP+K + W+W  W+ LP
Sbjct: 72  LKNVHFASVVNS-FIEKEN-YHYVTILMKGEVDVTHDSEPKNVEPEKNESWEWVPWEELP 131

Query: 129 --QPLFSPLLNFVNTGFDPF 143
               LF  L      G+DPF
Sbjct: 132 PLDQLFWGLRCLKEQGYDPF 149

[Close]

BLAST of MS020474 vs. ExPASy Swiss-Prot
Match: C5BHE7 (NAD-capped RNA hydrolase NudC OS=Edwardsiella ictaluri (strain 93-146) OX=634503 GN=nudC PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.0e-08
Identity = 34/113 (30.09%), Postives = 56/113 (49.56%), Query Frame = 0


Query: 13  VAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEKIEFI 72
           + V + +   +L+ R    H +  + V  G +E GE+ E+ AARE+ EE+ L ++ + ++
Sbjct: 131 IIVAIRRDDHILLARHN-RHRNGIYTVLAGFVEVGETLEQAAAREIFEESRLQVKNLRYV 190

Query: 73  TATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPKKCDGWDWYEWDRLPQ 126
           T+          P  +    M A LAD        +PK+    DWY +DRLPQ
Sbjct: 191 TS---------QPWPFPHSLMMAFLADYAAGDLCHDPKELQEADWYRYDRLPQ 233

[Close]

BLAST of MS020474 vs. ExPASy TrEMBL
Match: A0A6J1D608 (geranyl diphosphate phosphohydrolase-like OS=Momordica charantia OX=3673 GN=LOC111017248 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.1e-80
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   DNAPPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKE 60
           DN PPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKE
Sbjct: 2   DNPPPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKE 61

Query: 61  ETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPKKCDGWDWYEW 120
           ETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEP+KCDGWDWYEW
Sbjct: 62  ETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPEKCDGWDWYEW 121

Query: 121 DRLPQPLFSPLLNFVNTGFDPFPK 145
           DRLPQPLFSPLLNFVNTGFDPFPK
Sbjct: 122 DRLPQPLFSPLLNFVNTGFDPFPK 145

[Close]

BLAST of MS020474 vs. ExPASy TrEMBL
Match: A0A2I4ED83 (geranyl diphosphate phosphohydrolase OS=Juglans regia OX=51240 GN=LOC108988529 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 9.4e-56
Identity = 99/135 (73.33%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 9   PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEK 68
           P VGVAVFL  GK+VL+GRRR   GDSTFA+PGGHLEFGESFEECAARELKEETGLDI+K
Sbjct: 6   PRVGVAVFLLSGKAVLLGRRRSSIGDSTFALPGGHLEFGESFEECAARELKEETGLDIDK 65

Query: 69  IEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPKKCDGWDWYEWDRLPQPLF 128
           +E++T TN LFL+ P PSHYV IFMRA LADP+Q+ +NLEP+KCDGWDWY+WD LP+PLF
Sbjct: 66  VEYLTVTNTLFLEEPKPSHYVTIFMRAFLADPNQVPQNLEPQKCDGWDWYDWDNLPKPLF 125

Query: 129 SPLLNFVNTGFDPFP 144
            PL   V  G++PFP
Sbjct: 126 WPLEKMVQEGYNPFP 140

[Close]

BLAST of MS020474 vs. ExPASy TrEMBL
Match: A0A2P6R1Z9 (Putative hydrolase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0436191 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.6e-55
Identity = 100/143 (69.93%), Postives = 114/143 (79.72%), Query Frame = 0


Query: 1   DNAPPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKE 60
           +N    P P VGV VFL +GK+VL+GRRR   GDSTFA+PGGHLEFGE FEECAARELKE
Sbjct: 2   ENGASSPVPRVGVVVFLLRGKTVLLGRRRSSIGDSTFALPGGHLEFGEGFEECAARELKE 61

Query: 61  ETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPKKCDGWDWYEW 120
           ETGLD++KIEF+T TNNLFLD P P+HYV IFMRA L DPDQ+ + +EP KCDGW WYEW
Sbjct: 62  ETGLDLDKIEFVTVTNNLFLDEPKPAHYVTIFMRAVLKDPDQVPQTVEPDKCDGWGWYEW 121

Query: 121 DRLPQPLFSPLLNFVNTGFDPFP 144
           D LP+PLF PL   V +GF PFP
Sbjct: 122 DDLPKPLFWPLEKMVQSGFSPFP 144

[Close]

BLAST of MS020474 vs. ExPASy TrEMBL
Match: A0A7D5YFN1 (Nudix hydrolase 1-3 OS=Rosa hybrid cultivar OX=128735 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.6e-55
Identity = 100/143 (69.93%), Postives = 114/143 (79.72%), Query Frame = 0


Query: 1   DNAPPPPPPTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKE 60
           +N    P P VGV VFL +GK+VL+GRRR   GDSTFA+PGGHLEFGE FEECAARELKE
Sbjct: 2   ENGASSPVPRVGVVVFLLRGKTVLLGRRRSSIGDSTFALPGGHLEFGEGFEECAARELKE 61

Query: 61  ETGLDIEKIEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPKKCDGWDWYEW 120
           ETGLD++KIEF+T TNNLFLD P P+HYV IFMRA L DPDQ+ + +EP KCDGW WYEW
Sbjct: 62  ETGLDLDKIEFVTVTNNLFLDEPKPAHYVTIFMRAVLKDPDQVPQTVEPDKCDGWGWYEW 121

Query: 121 DRLPQPLFSPLLNFVNTGFDPFP 144
           D LP+PLF PL   V +GF PFP
Sbjct: 122 DDLPKPLFWPLEKMVQSGFSPFP 144

[Close]

BLAST of MS020474 vs. ExPASy TrEMBL
Match: V4TH94 (Nudix hydrolase domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10033020mg PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.8e-54
Identity = 99/135 (73.33%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 9   PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEK 68
           P VGV VF+ +GKSVL+G+RR   GDST+A+PGGHLEFGESFEECAARELKEETGLDIEK
Sbjct: 5   PRVGVVVFVLRGKSVLLGQRRSSIGDSTYALPGGHLEFGESFEECAARELKEETGLDIEK 64

Query: 69  IEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPKKCDGWDWYEWDRLPQPLF 128
           IEF+T TN++FL+NP PSHYVVIF+RA LADP Q  +NLEP KC GWDWY+W+ LPQPLF
Sbjct: 65  IEFLTVTNSVFLENPKPSHYVVIFLRAALADPLQEPQNLEPDKCHGWDWYDWNNLPQPLF 124

Query: 129 SPLLNFVNTGFDPFP 144
            PL   V +GF+PFP
Sbjct: 125 WPLEKMVQSGFNPFP 139

[Close]

BLAST of MS020474 vs. TAIR 10
Match: AT1G68760.1 (nudix hydrolase 1 )

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-49
Identity = 82/134 (61.19%), Postives = 105/134 (78.36%), Query Frame = 0


Query: 9   PTVGVAVFLFKGKSVLMGRRRVPHGDSTFAVPGGHLEFGESFEECAARELKEETGLDIEK 68
           P V V VF+  G S+L+GRRR   G+STFA+PGGHLEFGESFEECAARE+ EETGL IEK
Sbjct: 8   PRVAVVVFILNGNSILLGRRRSSIGNSTFALPGGHLEFGESFEECAAREVMEETGLKIEK 67

Query: 69  IEFITATNNLFLDNPSPSHYVVIFMRATLADPDQIARNLEPKKCDGWDWYEWDRLPQPLF 128
           ++ +T TNN+F + P+PSHYV + +RA L DP Q  +N+EP+KC+GWDWY+W+ LP+PLF
Sbjct: 68  MKLLTVTNNVFKEAPTPSHYVSVSIRAVLVDPSQEPKNMEPEKCEGWDWYDWENLPKPLF 127

Query: 129 SPLLNFVNTGFDPF 143
            PL     +GF+PF
Sbjct: 128 WPLEKLFGSGFNPF 141

The following BLAST results are available for this feature:

BLAST of MS020474 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148636.1	2.3e-80	98.61	geranyl diphosphate phosphohydrolase-like [Momordica charantia]	[more]
XP_018817359.1	1.9e-55	73.33	geranyl diphosphate phosphohydrolase [Juglans regia] >KAF5450131.1 hypothetical ...	[more]
XP_024196843.1	3.3e-55	69.93	geranyl diphosphate phosphohydrolase [Rosa chinensis] >PRQ40454.1 putative hydro...	[more]
XP_042978438.1	7.4e-55	72.59	geranyl diphosphate phosphohydrolase-like [Carya illinoinensis] >KAG6654833.1 hy...	[more]
XP_041012739.1	1.6e-54	72.59	nudix hydrolase 1 [Juglans microcarpa x Juglans regia]	[more]

BLAST of MS020474 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
M4I1C6	2.0e-50	68.42	Geranyl diphosphate phosphohydrolase OS=Rosa hybrid cultivar OX=128735 GN=NUDIX1...	[more]
Q9CA40	1.8e-48	61.19	Nudix hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=NUDT1 PE=1 SV=1	[more]
Q8BG93	5.0e-22	39.46	Nucleotide triphosphate diphosphatase NUDT15 OS=Mus musculus OX=10090 GN=Nudt15 ...	[more]
Q9NV35	4.2e-21	39.29	Nucleotide triphosphate diphosphatase NUDT15 OS=Homo sapiens OX=9606 GN=NUDT15 P...	[more]
C5BHE7	7.0e-08	30.09	NAD-capped RNA hydrolase NudC OS=Edwardsiella ictaluri (strain 93-146) OX=634503...	[more]

BLAST of MS020474 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D608	1.1e-80	98.61	geranyl diphosphate phosphohydrolase-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A2I4ED83	9.4e-56	73.33	geranyl diphosphate phosphohydrolase OS=Juglans regia OX=51240 GN=LOC108988529 P...	[more]
A0A2P6R1Z9	1.6e-55	69.93	Putative hydrolase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0436191 PE=3 SV=1	[more]
A0A7D5YFN1	1.6e-55	69.93	Nudix hydrolase 1-3 OS=Rosa hybrid cultivar OX=128735 PE=3 SV=1	[more]
V4TH94	1.8e-54	73.33	Nudix hydrolase domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE...	[more]

BLAST of MS020474 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68760.1	1.3e-49	61.19	nudix hydrolase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020476	NUDIX hydrolase	PRINTS	PR00502	NUDIXFAMILY	coord: 37..51 score: 41.66 coord: 51..66 score: 51.75
None	No IPR available	GENE3D	3.90.79.10	Nucleoside Triphosphate Pyrophosphohydrolase	coord: 6..144 e-value: 1.2E-46 score: 159.9
None	No IPR available	PANTHER	PTHR16099	8-OXO-DGTP DIPHOSPHATES NUDT15	coord: 6..143
None	No IPR available	CDD	cd04678	Nudix_Hydrolase_19	coord: 11..134 e-value: 3.01905E-58 score: 175.143
IPR000086	NUDIX hydrolase domain	PFAM	PF00293	NUDIX	coord: 10..125 e-value: 8.4E-21 score: 74.4
IPR000086	NUDIX hydrolase domain	PROSITE	PS51462	NUDIX	coord: 6..144 score: 16.109734
IPR020084	NUDIX hydrolase, conserved site	PROSITE	PS00893	NUDIX_BOX	coord: 42..63
IPR015797	NUDIX hydrolase-like domain superfamily	SUPERFAMILY	55811	Nudix	coord: 3..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020474.1	MS020474.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity