MS020434 (gene) Bitter gourd (TR) v1

Overview
NameMS020434
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold211: 703299 .. 703601 (+)
RNA-Seq ExpressionMS020434
SyntenyMS020434
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAACAACGTCCCGGTGACGCGACTACCAGAGGGTGTACGAAGCGTATCCGATAGTCCAGATGGGAGCGACGGGATCTTACATGCAGGCGTCATGATGGGGAACGATCGAAAGACAGAGCGGAATACTCGAAAGACTTTGGTCTTGTGCTTCTTTCTTTTGGACGGTTGGACGAGGCCATTGGGGGAGGAACTTGCAGGTGGCAGCGGCGGGGGCGGAGGAGTTGAAGAATCTGGCGACGGCTCCGGTGTTGTGGTGGCGGCGTCGGCGGCGGTGGGTGTAGATTTTGGGTCTCCCATCAAC

mRNA sequence

CCAAACAACGTCCCGGTGACGCGACTACCAGAGGGTGTACGAAGCGTATCCGATAGTCCAGATGGGAGCGACGGGATCTTACATGCAGGCGTCATGATGGGGAACGATCGAAAGACAGAGCGGAATACTCGAAAGACTTTGGTCTTGTGCTTCTTTCTTTTGGACGGTTGGACGAGGCCATTGGGGGAGGAACTTGCAGGTGGCAGCGGCGGGGGCGGAGGAGTTGAAGAATCTGGCGACGGCTCCGGTGTTGTGGTGGCGGCGTCGGCGGCGGTGGGTGTAGATTTTGGGTCTCCCATCAAC

Coding sequence (CDS)

CCAAACAACGTCCCGGTGACGCGACTACCAGAGGGTGTACGAAGCGTATCCGATAGTCCAGATGGGAGCGACGGGATCTTACATGCAGGCGTCATGATGGGGAACGATCGAAAGACAGAGCGGAATACTCGAAAGACTTTGGTCTTGTGCTTCTTTCTTTTGGACGGTTGGACGAGGCCATTGGGGGAGGAACTTGCAGGTGGCAGCGGCGGGGGCGGAGGAGTTGAAGAATCTGGCGACGGCTCCGGTGTTGTGGTGGCGGCGTCGGCGGCGGTGGGTGTAGATTTTGGGTCTCCCATCAAC

Protein sequence

PNNVPVTRLPEGVRSVSDSPDGSDGILHAGVMMGNDRKTERNTRKTLVLCFFLLDGWTRPLGEELAGGSGGGGGVEESGDGSGVVVAASAAVGVDFGSPIN
Homology
BLAST of MS020434 vs. NCBI nr
Match: KAA0045885.1 (hypothetical protein E6C27_scaffold243G004210 [Cucumis melo var. makuwa] >TYK13702.1 hypothetical protein E5676_scaffold299G002260 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 2.9e-21
Identity = 66/109 (60.55%), Postives = 74/109 (67.89%), Query Frame = 0

Query: 1   PNNVPVTRLPEGVRSVSDSPDGSDGILHAGVMMGNDRKTERNTRKTLVLCFFLLDGWTR- 60
           P +VPVTRLP+G R+VSD PDGSDGILHAGVMMG DR T+R TRKTLVL F  LDG TR 
Sbjct: 21  PKSVPVTRLPDGPRNVSDRPDGSDGILHAGVMMGKDRNTDRKTRKTLVLFFLRLDGGTRE 80

Query: 61  ---PLGEELAGGSGGGGGVEE----SGDGSGVVVAASAAVGVDFGSPIN 102
                 E+  GG GGGGG EE    SG    V    + AV VDFGSP++
Sbjct: 81  EEDEEEEDCGGGGGGGGGAEEQYADSGSREVVGEMVTIAVEVDFGSPMH 129

BLAST of MS020434 vs. NCBI nr
Match: KAG6605299.1 (hypothetical protein SDJN03_02616, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.2 bits (269), Expect = 4.1e-20
Identity = 67/105 (63.81%), Postives = 72/105 (68.57%), Query Frame = 0

Query: 1   PNNVPVTRLPEGVRSVSDSPDGSDGILH-AGVMMGNDRKTERNTRKTLVLCFFLLDGWTR 60
           PN+VPVTR P+ V SVSD PDGSDGILH AGVMMG DR T+RNTR TLVL FFL DG TR
Sbjct: 11  PNSVPVTRFPDCVSSVSDMPDGSDGILHAAGVMMGKDRNTDRNTRNTLVLFFFLFDGGTR 70

Query: 61  PLGE--ELAGGSGGG-GGVEESGDGSGVVVAASAAVGVDFGSPIN 102
              E  E  GGSGGG GG E+ G        +S    VDFGSPIN
Sbjct: 71  EEDEVKEGCGGSGGGCGGAEDFGGD-----CSSGRAAVDFGSPIN 110

BLAST of MS020434 vs. NCBI nr
Match: KYP69353.1 (hypothetical protein KK1_008543 [Cajanus cajan])

HSP 1 Score: 54.3 bits (129), Expect = 7.1e-04
Identity = 32/62 (51.61%), Postives = 37/62 (59.68%), Query Frame = 0

Query: 22  GSDGILHAGVMMGNDRKTERNTRKTLVLCFFLLDGWTRPLGEELAGGSGGGGGVEESGDG 81
           G  G L  GVMMG +RKTERN R  L    FL +GWTR +G   +GG GGGGG  + G  
Sbjct: 95  GMAGNLQEGVMMGRERKTERNMRTILGFWRFLREGWTREMG---SGGGGGGGGDADLGSP 153

Query: 82  SG 84
            G
Sbjct: 155 IG 153

BLAST of MS020434 vs. ExPASy TrEMBL
Match: A0A0A0LMU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G296020 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.6e-22
Identity = 64/111 (57.66%), Postives = 75/111 (67.57%), Query Frame = 0

Query: 1   PNNVPVTRLPEGVRSVSDSPDGSDGILHAGVMMGNDRKTERNTRKTLVLCFFLLDGWTRP 60
           P +VPVTRLP+G R+VSD PDG DGILHAGVM+G DR T+R TRKTLVLCF  LDG TR 
Sbjct: 27  PKSVPVTRLPDGPRNVSDRPDGRDGILHAGVMIGKDRNTDRKTRKTLVLCFLRLDGGTRE 86

Query: 61  LGEE----LAGGSGGGGGVEESGDGSG------VVVAASAAVGVDFGSPIN 102
             +E      GG GGGGG E+    SG      V+V  +  V VDFGSP++
Sbjct: 87  EEDEEEQDCGGGGGGGGGAEKQSGDSGWREVVAVMVTIAVEVEVDFGSPMH 137

BLAST of MS020434 vs. ExPASy TrEMBL
Match: A0A5D3CQN7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002260 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 66/109 (60.55%), Postives = 74/109 (67.89%), Query Frame = 0

Query: 1   PNNVPVTRLPEGVRSVSDSPDGSDGILHAGVMMGNDRKTERNTRKTLVLCFFLLDGWTR- 60
           P +VPVTRLP+G R+VSD PDGSDGILHAGVMMG DR T+R TRKTLVL F  LDG TR 
Sbjct: 21  PKSVPVTRLPDGPRNVSDRPDGSDGILHAGVMMGKDRNTDRKTRKTLVLFFLRLDGGTRE 80

Query: 61  ---PLGEELAGGSGGGGGVEE----SGDGSGVVVAASAAVGVDFGSPIN 102
                 E+  GG GGGGG EE    SG    V    + AV VDFGSP++
Sbjct: 81  EEDEEEEDCGGGGGGGGGAEEQYADSGSREVVGEMVTIAVEVDFGSPMH 129

BLAST of MS020434 vs. ExPASy TrEMBL
Match: A0A151TQN2 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_008543 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.4e-04
Identity = 32/62 (51.61%), Postives = 37/62 (59.68%), Query Frame = 0

Query: 22  GSDGILHAGVMMGNDRKTERNTRKTLVLCFFLLDGWTRPLGEELAGGSGGGGGVEESGDG 81
           G  G L  GVMMG +RKTERN R  L    FL +GWTR +G   +GG GGGGG  + G  
Sbjct: 95  GMAGNLQEGVMMGRERKTERNMRTILGFWRFLREGWTREMG---SGGGGGGGGDADLGSP 153

Query: 82  SG 84
            G
Sbjct: 155 IG 153

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0045885.12.9e-2160.55hypothetical protein E6C27_scaffold243G004210 [Cucumis melo var. makuwa] >TYK137... [more]
KAG6605299.14.1e-2063.81hypothetical protein SDJN03_02616, partial [Cucurbita argyrosperma subsp. sorori... [more]
KYP69353.17.1e-0451.61hypothetical protein KK1_008543 [Cajanus cajan][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LMU03.6e-2257.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G296020 PE=4 SV=1[more]
A0A5D3CQN71.4e-2160.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A151TQN23.4e-0451.61Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_008543 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS020434.1MS020434.1mRNA