MS020400 (gene) Bitter gourd (TR) v1

Overview


Name	MS020400
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	B3 domain-containing protein
Location	scaffold211: 271049 .. 271348 (-)
RNA-Seq Expression	MS020400
Synteny	MS020400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCCAACAAAATTTGTGAGAGAATATGGGGTGCAAGCCTTGTTAAGCAGCAAAACGTGTCTTAAGGTGGCCGATGGCCGAGAGTGGAATGTGGGTTTGGCCAAAAGTGATGGAAGGGTCTGGTTTGATGATGGGTGGCAGAAGTTTGTAGAGTTTTACTCCATTGGATTGGAAGACTTTCTAATGTTTCGATACGAAAGGAAACCTTCGAGCTTTCGTGTCGTCATCTTCGATAACAGCGCTATGGAAATCGAGTATCCTGTGAAGAGAATTCGTCTTGATAGAGCTGATGGAAGGGTG

mRNA sequence

ATCCCAACAAAATTTGTGAGAGAATATGGGGTGCAAGCCTTGTTAAGCAGCAAAACGTGTCTTAAGGTGGCCGATGGCCGAGAGTGGAATGTGGGTTTGGCCAAAAGTGATGGAAGGGTCTGGTTTGATGATGGGTGGCAGAAGTTTGTAGAGTTTTACTCCATTGGATTGGAAGACTTTCTAATGTTTCGATACGAAAGGAAACCTTCGAGCTTTCGTGTCGTCATCTTCGATAACAGCGCTATGGAAATCGAGTATCCTGTGAAGAGAATTCGTCTTGATAGAGCTGATGGAAGGGTG

Coding sequence (CDS)

ATCCCAACAAAATTTGTGAGAGAATATGGGGTGCAAGCCTTGTTAAGCAGCAAAACGTGTCTTAAGGTGGCCGATGGCCGAGAGTGGAATGTGGGTTTGGCCAAAAGTGATGGAAGGGTCTGGTTTGATGATGGGTGGCAGAAGTTTGTAGAGTTTTACTCCATTGGATTGGAAGACTTTCTAATGTTTCGATACGAAAGGAAACCTTCGAGCTTTCGTGTCGTCATCTTCGATAACAGCGCTATGGAAATCGAGTATCCTGTGAAGAGAATTCGTCTTGATAGAGCTGATGGAAGGGTG

Protein sequence

IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV

Homology

[Close]

BLAST of MS020400 vs. NCBI nr
Match: XP_022158239.1 (B3 domain-containing transcription factor VRN1-like [Momordica charantia])

HSP 1 Score: 207.6 bits (527), Expect = 5.0e-50
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDF 60
           IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDF
Sbjct: 27  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDF 86

Query: 61  LMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV 101
           LMFRYERKPSSFRVVIFDNS MEIEYPVKRIRLDRADGRV
Sbjct: 87  LMFRYERKPSSFRVVIFDNSTMEIEYPVKRIRLDRADGRV 126

[Close]

BLAST of MS020400 vs. NCBI nr
Match: XP_038900379.1 (B3 domain-containing transcription factor VRN1-like [Benincasa hispida])

HSP 1 Score: 138.7 bits (348), Expect = 2.8e-29
Identity = 65/102 (63.73%), Postives = 83/102 (81.37%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDG--RVWFDDGWQKFVEFYSIGLE 60
           IP KFVREYG +A ++++T LKVADG+EWN+GL KS+   RVWF  GWQ+FVEFYS+GL 
Sbjct: 41  IPRKFVREYGQKAFVTNQTLLKVADGKEWNMGLTKSNNGRRVWFYHGWQQFVEFYSLGLG 100

Query: 61  DFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV 101
            FL+F+YE + SSF VVIFD +AMEIEYPVK IRLD+ + ++
Sbjct: 101 YFLVFKYENRSSSFNVVIFDLTAMEIEYPVKNIRLDKTEEKI 142

[Close]

BLAST of MS020400 vs. NCBI nr
Match: XP_031737037.1 (B3 domain-containing protein At4g01580-like [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 9.1e-28
Identity = 71/104 (68.27%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKV-ADGREWNVGLAKS-DG-RVWF-DDGWQKFVEFYSIG 60
           IPTKFVREYGV+A  +++ CLKV ADGR+WNVGL KS DG RVWF D GWQ FVEFYS+G
Sbjct: 40  IPTKFVREYGVKAFATNQICLKVAADGRKWNVGLTKSNDGTRVWFHDHGWQTFVEFYSVG 99

Query: 61  LEDFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV 101
           LE FL+F+YE + SSF VVIFD +A EIEYP+K I LD A+ +V
Sbjct: 100 LEYFLVFKYECQSSSFYVVIFDRTATEIEYPIKIICLDDAEEKV 143

[Close]

BLAST of MS020400 vs. NCBI nr
Match: XP_016902156.1 (PREDICTED: uncharacterized protein LOC103497524 isoform X1 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 2.6e-27
Identity = 64/102 (62.75%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDG--RVWFDDGWQKFVEFYSIGLE 60
           IP KFVREYG+QALL  + CLKV DG+EWNVGL KS+   RVWF  GW+K VEFYS+   
Sbjct: 42  IPRKFVREYGLQALLKDQVCLKVRDGKEWNVGLTKSNNGTRVWFHYGWEKLVEFYSVKSG 101

Query: 61  DFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV 101
            FL+F+YE + SS  VVIFD +A EIEYPVK+I LD++  RV
Sbjct: 102 YFLVFKYENQSSSLYVVIFDRTATEIEYPVKKISLDKSKERV 143

[Close]

BLAST of MS020400 vs. NCBI nr
Match: XP_008457959.1 (PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X2 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 2.6e-27
Identity = 64/102 (62.75%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDG--RVWFDDGWQKFVEFYSIGLE 60
           IP KFVREYG+QALL  + CLKV DG+EWNVGL KS+   RVWF  GW+K VEFYS+   
Sbjct: 42  IPRKFVREYGLQALLKDQVCLKVRDGKEWNVGLTKSNNGTRVWFHYGWEKLVEFYSVKSG 101

Query: 61  DFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV 101
            FL+F+YE + SS  VVIFD +A EIEYPVK+I LD++  RV
Sbjct: 102 YFLVFKYENQSSSLYVVIFDRTATEIEYPVKKISLDKSKERV 143

[Close]

BLAST of MS020400 vs. ExPASy Swiss-Prot
Match: Q8L3W1 (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 GN=VRN1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-14
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDF 60
           +P KFV ++  +  LS    L V DG  W VGL K+D ++WF DGWQ+FV+ YSI +   
Sbjct: 22  VPDKFVSKFKDE--LSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYL 81

Query: 61  LMFRYERKPSSFRVVIFDNSAMEIEY 87
           L+FRYE   S+F V IF+ S  EI Y
Sbjct: 82  LIFRYEGN-SAFSVYIFNLSHSEINY 104

[Close]

BLAST of MS020400 vs. ExPASy Swiss-Prot
Match: Q9ZSH7 (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.0e-10
Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDF 60
           IP +FV+  G  + LS    L    G + ++ L +    +WF +GW +F E +SI    F
Sbjct: 46  IPPRFVKLQG--SKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHF 105

Query: 61  LMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV 101
           L+F Y +K SSFRV+IF+ SA E  YP+  + +  +D  V
Sbjct: 106 LLFEY-KKNSSFRVIIFNASACETNYPLDAVHIIDSDDDV 142

[Close]

BLAST of MS020400 vs. ExPASy Swiss-Prot
Match: Q84R27 (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18960 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.9e-10
Identity = 35/97 (36.08%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDF 60
           IP +FV+  G  + LS    L+   G + ++ L +    +WF +GW +F E +SI    F
Sbjct: 46  IPPRFVKLQG--SKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHF 105

Query: 61  LMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRAD 98
           L+F Y ++ SSFRV+IF+ SA E +YP+  + +  +D
Sbjct: 106 LLFEY-KENSSFRVIIFNVSACETKYPLDAVHIIDSD 139

[Close]

BLAST of MS020400 vs. ExPASy Swiss-Prot
Match: Q9XIB4 (B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana OX=3702 GN=At1g49475 PE=2 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-09
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDF 60
           +P +FVR +G +  L+    L+   G + ++ + +    VWF+ GW +F E +S+    F
Sbjct: 50  VPARFVR-FGPK--LTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSDGHF 109

Query: 61  LMFRYERKPSSFRVVIFDNSAMEIEYPV 89
           L F YE   S FRVVIFD SA EIEYP+
Sbjct: 110 LFFHYE-GDSCFRVVIFDVSASEIEYPL 133

[Close]

BLAST of MS020400 vs. ExPASy Swiss-Prot
Match: Q10GM3 (B3 domain-containing protein Os03g0622200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0622200 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-07
Identity = 31/88 (35.23%), Postives = 46/88 (52.27%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSD-GRVWFDDGWQKFVEFYSIGLED 60
           +P +F   +     +S +  L+   G  W++G+A SD G +    GW++FV+   I   D
Sbjct: 46  VPARFANNF--NGHISEEVNLRSPSGETWSIGVANSDAGELVLQPGWKEFVDGNGIEEGD 105

Query: 61  FLMFRYERKPSSFRVVIFDNSAMEIEYP 88
            L+FRY    SSF V+IFD S  E   P
Sbjct: 106 CLLFRYSGVSSSFDVLIFDPSGCEKASP 131

[Close]

BLAST of MS020400 vs. ExPASy TrEMBL
Match: A0A6J1DYT9 (B3 domain-containing transcription factor VRN1-like OS=Momordica charantia OX=3673 GN=LOC111024772 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.4e-50
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDF 60
           IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDF
Sbjct: 27  IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDF 86

Query: 61  LMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV 101
           LMFRYERKPSSFRVVIFDNS MEIEYPVKRIRLDRADGRV
Sbjct: 87  LMFRYERKPSSFRVVIFDNSTMEIEYPVKRIRLDRADGRV 126

[Close]

BLAST of MS020400 vs. ExPASy TrEMBL
Match: A0A5D3CPB8 (Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002620 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-27
Identity = 64/102 (62.75%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDG--RVWFDDGWQKFVEFYSIGLE 60
           IP KFVREYG+QALL  + CLKV DG+EWNVGL KS+   RVWF  GW+K VEFYS+   
Sbjct: 42  IPRKFVREYGLQALLKDQVCLKVRDGKEWNVGLTKSNNGTRVWFHYGWEKLVEFYSVKSG 101

Query: 61  DFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV 101
            FL+F+YE + SS  VVIFD +A EIEYPVK+I LD++  RV
Sbjct: 102 YFLVFKYENQSSSLYVVIFDRTATEIEYPVKKISLDKSKERV 143

[Close]

BLAST of MS020400 vs. ExPASy TrEMBL
Match: A0A1S4E1Q2 (uncharacterized protein LOC103497524 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497524 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-27
Identity = 64/102 (62.75%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDG--RVWFDDGWQKFVEFYSIGLE 60
           IP KFVREYG+QALL  + CLKV DG+EWNVGL KS+   RVWF  GW+K VEFYS+   
Sbjct: 42  IPRKFVREYGLQALLKDQVCLKVRDGKEWNVGLTKSNNGTRVWFHYGWEKLVEFYSVKSG 101

Query: 61  DFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV 101
            FL+F+YE + SS  VVIFD +A EIEYPVK+I LD++  RV
Sbjct: 102 YFLVFKYENQSSSLYVVIFDRTATEIEYPVKKISLDKSKERV 143

[Close]

BLAST of MS020400 vs. ExPASy TrEMBL
Match: A0A1S3C7C6 (putative B3 domain-containing protein Os03g0621600 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497524 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-27
Identity = 64/102 (62.75%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDG--RVWFDDGWQKFVEFYSIGLE 60
           IP KFVREYG+QALL  + CLKV DG+EWNVGL KS+   RVWF  GW+K VEFYS+   
Sbjct: 42  IPRKFVREYGLQALLKDQVCLKVRDGKEWNVGLTKSNNGTRVWFHYGWEKLVEFYSVKSG 101

Query: 61  DFLMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV 101
            FL+F+YE + SS  VVIFD +A EIEYPVK+I LD++  RV
Sbjct: 102 YFLVFKYENQSSSLYVVIFDRTATEIEYPVKKISLDKSKERV 143

[Close]

BLAST of MS020400 vs. ExPASy TrEMBL
Match: A0A6J1I7N8 (B3 domain-containing protein REM8-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470376 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 8.3e-27
Identity = 59/90 (65.56%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDF 60
           IP KFV EYG++A  ++ T LKVADG EW VG+ KSDGRVWFD GWQKFVEFY++GLE F
Sbjct: 43  IPKKFVGEYGLKAFENNPTRLKVADGEEWEVGVTKSDGRVWFDYGWQKFVEFYNVGLEYF 102

Query: 61  LMFRYERKPSSFRVVIFDNSAMEIEYPVKR 91
           L+F+YE + S F VVIFD +A EI+YP+K+
Sbjct: 103 LVFKYELRSSCFHVVIFDPTATEIKYPLKK 132

[Close]

BLAST of MS020400 vs. TAIR 10
Match: AT3G18990.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 78.6 bits (192), Expect = 3.2e-15
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDF 60
           +P KFV ++  +  LS    L V DG  W VGL K+D ++WF DGWQ+FV+ YSI +   
Sbjct: 22  VPDKFVSKFKDE--LSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYL 81

Query: 61  LMFRYERKPSSFRVVIFDNSAMEIEY 87
           L+FRYE   S+F V IF+ S  EI Y
Sbjct: 82  LIFRYEGN-SAFSVYIFNLSHSEINY 104

[Close]

BLAST of MS020400 vs. TAIR 10
Match: AT4G01580.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 65.5 bits (158), Expect = 2.8e-11
Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDF 60
           IP +FV+  G  + LS    L    G + ++ L +    +WF +GW +F E +SI    F
Sbjct: 46  IPPRFVKLQG--SKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHF 105

Query: 61  LMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRADGRV 101
           L+F Y +K SSFRV+IF+ SA E  YP+  + +  +D  V
Sbjct: 106 LLFEY-KKNSSFRVIIFNASACETNYPLDAVHIIDSDDDV 142

[Close]

BLAST of MS020400 vs. TAIR 10
Match: AT3G18960.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 64.3 bits (155), Expect = 6.3e-11
Identity = 35/97 (36.08%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDF 60
           IP +FV+  G  + LS    L+   G + ++ L +    +WF +GW +F E +SI    F
Sbjct: 46  IPPRFVKLQG--SKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHF 105

Query: 61  LMFRYERKPSSFRVVIFDNSAMEIEYPVKRIRLDRAD 98
           L+F Y ++ SSFRV+IF+ SA E +YP+  + +  +D
Sbjct: 106 LLFEY-KENSSFRVIIFNVSACETKYPLDAVHIIDSD 139

[Close]

BLAST of MS020400 vs. TAIR 10
Match: AT1G49475.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 63.9 bits (154), Expect = 8.2e-11
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVWFDDGWQKFVEFYSIGLEDF 60
           +P +FVR +G +  L+    L+   G + ++ + +    VWF+ GW +F E +S+    F
Sbjct: 50  VPARFVR-FGPK--LTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSDGHF 109

Query: 61  LMFRYERKPSSFRVVIFDNSAMEIEYPV 89
           L F YE   S FRVVIFD SA EIEYP+
Sbjct: 110 LFFHYE-GDSCFRVVIFDVSASEIEYPL 133

[Close]

BLAST of MS020400 vs. TAIR 10
Match: AT4G33280.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 41.2 bits (95), Expect = 5.7e-04
Identity = 27/83 (32.53%), Postives = 41/83 (49.40%), Query Frame = 0


Query: 1   IPTKFVREYGVQALLSSKTCLKVADGREWNVGLAKSDGRVW-FDDGWQKFVEFYSIGLED 60
           IP KF      +  L     LK   G  +NVG+ + D +   F  GW KFV+ +S+   D
Sbjct: 39  IPRKFSTH--CKRKLPQIVTLKSPSGVTYNVGVEEDDEKTMAFRFGWDKFVKDHSLEEND 98

Query: 61  FLMFRYERKPSSFRVVIFDNSAM 83
            L+F++    S F V++FD   +
Sbjct: 99  LLVFKF-HGVSEFEVLVFDGQTL 118

The following BLAST results are available for this feature:

BLAST of MS020400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158239.1	5.0e-50	99.00	B3 domain-containing transcription factor VRN1-like [Momordica charantia]	[more]
XP_038900379.1	2.8e-29	63.73	B3 domain-containing transcription factor VRN1-like [Benincasa hispida]	[more]
XP_031737037.1	9.1e-28	68.27	B3 domain-containing protein At4g01580-like [Cucumis sativus]	[more]
XP_016902156.1	2.6e-27	62.75	PREDICTED: uncharacterized protein LOC103497524 isoform X1 [Cucumis melo]	[more]
XP_008457959.1	2.6e-27	62.75	PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X2 [Cucumi...	[more]

BLAST of MS020400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L3W1	4.6e-14	47.67	B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9ZSH7	4.0e-10	37.00	B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01...	[more]
Q84R27	8.9e-10	36.08	B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18...	[more]
Q9XIB4	1.2e-09	40.91	B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana OX=3702 GN=At1g49...	[more]
Q10GM3	3.2e-07	35.23	B3 domain-containing protein Os03g0622200 OS=Oryza sativa subsp. japonica OX=399...	[more]

BLAST of MS020400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DYT9	2.4e-50	99.00	B3 domain-containing transcription factor VRN1-like OS=Momordica charantia OX=36...	[more]
A0A5D3CPB8	1.3e-27	62.75	Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S4E1Q2	1.3e-27	62.75	uncharacterized protein LOC103497524 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C7C6	1.3e-27	62.75	putative B3 domain-containing protein Os03g0621600 isoform X2 OS=Cucumis melo OX...	[more]
A0A6J1I7N8	8.3e-27	65.56	B3 domain-containing protein REM8-like isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of MS020400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18990.1	3.2e-15	47.67	AP2/B3-like transcriptional factor family protein	[more]
AT4G01580.1	2.8e-11	37.00	AP2/B3-like transcriptional factor family protein	[more]
AT3G18960.1	6.3e-11	36.08	AP2/B3-like transcriptional factor family protein	[more]
AT1G49475.1	8.2e-11	40.91	AP2/B3-like transcriptional factor family protein	[more]
AT4G33280.1	5.7e-04	32.53	AP2/B3-like transcriptional factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 1..79 e-value: 2.5E-14 score: 52.9
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 1..80 score: 13.746792
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 1..78 e-value: 3.525E-16 score: 65.8121
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 1..81 e-value: 7.4E-19 score: 69.5
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 1..80
None	No IPR available	PANTHER	PTHR31920	B3 DOMAIN-CONTAINING	coord: 1..90
None	No IPR available	PANTHER	PTHR31920:SF26	TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020400.1	MS020400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding