MS020399 (gene) Bitter gourd (TR) v1

Overview


Name	MS020399
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	B3 domain-containing protein
Location	scaffold211: 264006 .. 264272 (-)
RNA-Seq Expression	MS020399
Synteny	MS020399

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCCAAAAAAGTTTGTGAGAGAATATAATGGCGTGCTCGTGCAAGCCTTGTTGAGCAGCAAAATGTGTCTTAAGGTTGCTGATGGCCGAGAGTGGAATTTGGGTTTGGCCAAAAGTAATGGAAGGGTTTGGTTTTCTGATGGATGGCAAAAGTTTGCAGAGTTTTACTCTCTTGGACTCGGACACTTTCTAGTGTTTCGATATGAAAGTCAATCTTCCAGCTTTCACGTCGTCGTCTTCGATATCAGTGCTACGGAAATCGAGTAT

mRNA sequence

ATCCCAAAAAAGTTTGTGAGAGAATATAATGGCGTGCTCGTGCAAGCCTTGTTGAGCAGCAAAATGTGTCTTAAGGTTGCTGATGGCCGAGAGTGGAATTTGGGTTTGGCCAAAAGTAATGGAAGGGTTTGGTTTTCTGATGGATGGCAAAAGTTTGCAGAGTTTTACTCTCTTGGACTCGGACACTTTCTAGTGTTTCGATATGAAAGTCAATCTTCCAGCTTTCACGTCGTCGTCTTCGATATCAGTGCTACGGAAATCGAGTAT

Coding sequence (CDS)

ATCCCAAAAAAGTTTGTGAGAGAATATAATGGCGTGCTCGTGCAAGCCTTGTTGAGCAGCAAAATGTGTCTTAAGGTTGCTGATGGCCGAGAGTGGAATTTGGGTTTGGCCAAAAGTAATGGAAGGGTTTGGTTTTCTGATGGATGGCAAAAGTTTGCAGAGTTTTACTCTCTTGGACTCGGACACTTTCTAGTGTTTCGATATGAAAGTCAATCTTCCAGCTTTCACGTCGTCGTCTTCGATATCAGTGCTACGGAAATCGAGTAT

Protein sequence

IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGLGHFLVFRYESQSSSFHVVVFDISATEIEY

Homology

[Close]

BLAST of MS020399 vs. NCBI nr
Match: XP_022158239.1 (B3 domain-containing transcription factor VRN1-like [Momordica charantia])

HSP 1 Score: 182.6 bits (462), Expect = 1.5e-42
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1   IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGL 60
           IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLG 
Sbjct: 277 IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGF 336

Query: 61  GHFLVFRYESQSSSFHVVVFDISATEIEY 90
           GHFLVFRYESQSSSFHVVVFDISATEIEY
Sbjct: 337 GHFLVFRYESQSSSFHVVVFDISATEIEY 365

[Close]

BLAST of MS020399 vs. NCBI nr
Match: XP_038900379.1 (B3 domain-containing transcription factor VRN1-like [Benincasa hispida])

HSP 1 Score: 120.9 bits (302), Expect = 5.4e-24
Identity = 58/91 (63.74%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 1   IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSL 60
           IP+KFVREY     +A ++++  LKVADG+EWN+GL KSN   RVWF  GWQ+F EFYSL
Sbjct: 41  IPRKFVREYG---QKAFVTNQTLLKVADGKEWNMGLTKSNNGRRVWFYHGWQQFVEFYSL 100

Query: 61  GLGHFLVFRYESQSSSFHVVVFDISATEIEY 90
           GLG+FLVF+YE++SSSF+VV+FD++A EIEY
Sbjct: 101 GLGYFLVFKYENRSSSFNVVIFDLTAMEIEY 128

[Close]

BLAST of MS020399 vs. NCBI nr
Match: XP_016902156.1 (PREDICTED: uncharacterized protein LOC103497524 isoform X1 [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 2.1e-23
Identity = 58/91 (63.74%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 1   IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSL 60
           IP+KFVREY    +QALL  ++CLKV DG+EWN+GL KSN   RVWF  GW+K  EFYS+
Sbjct: 42  IPRKFVREYG---LQALLKDQVCLKVRDGKEWNVGLTKSNNGTRVWFHYGWEKLVEFYSV 101

Query: 61  GLGHFLVFRYESQSSSFHVVVFDISATEIEY 90
             G+FLVF+YE+QSSS +VV+FD +ATEIEY
Sbjct: 102 KSGYFLVFKYENQSSSLYVVIFDRTATEIEY 129

[Close]

BLAST of MS020399 vs. NCBI nr
Match: XP_008457959.1 (PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X2 [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 2.1e-23
Identity = 58/91 (63.74%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 1   IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSL 60
           IP+KFVREY    +QALL  ++CLKV DG+EWN+GL KSN   RVWF  GW+K  EFYS+
Sbjct: 42  IPRKFVREYG---LQALLKDQVCLKVRDGKEWNVGLTKSNNGTRVWFHYGWEKLVEFYSV 101

Query: 61  GLGHFLVFRYESQSSSFHVVVFDISATEIEY 90
             G+FLVF+YE+QSSS +VV+FD +ATEIEY
Sbjct: 102 KSGYFLVFKYENQSSSLYVVIFDRTATEIEY 129

[Close]

BLAST of MS020399 vs. NCBI nr
Match: KAA0045855.1 (putative B3 domain-containing protein [Cucumis melo var. makuwa] >TYK13733.1 putative B3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 2.1e-23
Identity = 58/91 (63.74%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 1   IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSL 60
           IP+KFVREY    +QALL  ++CLKV DG+EWN+GL KSN   RVWF  GW+K  EFYS+
Sbjct: 42  IPRKFVREYG---LQALLKDQVCLKVRDGKEWNVGLTKSNNGTRVWFHYGWEKLVEFYSV 101

Query: 61  GLGHFLVFRYESQSSSFHVVVFDISATEIEY 90
             G+FLVF+YE+QSSS +VV+FD +ATEIEY
Sbjct: 102 KSGYFLVFKYENQSSSLYVVIFDRTATEIEY 129

[Close]

BLAST of MS020399 vs. ExPASy Swiss-Prot
Match: Q8L3W1 (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 GN=VRN1 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-14
Identity = 37/89 (41.57%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 1   IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGL 60
           +P KFV ++        LS  + L V DG  W +GL K++ ++WF DGWQ+F + YS+ +
Sbjct: 22  VPDKFVSKFKDE-----LSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRI 81

Query: 61  GHFLVFRYESQSSSFHVVVFDISATEIEY 90
           G+ L+FRYE  +S+F V +F++S +EI Y
Sbjct: 82  GYLLIFRYEG-NSAFSVYIFNLSHSEINY 104

[Close]

BLAST of MS020399 vs. ExPASy Swiss-Prot
Match: Q9XIB4 (B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana OX=3702 GN=At1g49475 PE=2 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 3.6e-10
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 1   IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGL 60
           +P +FVR          L+  + L+   G + ++ + +    VWF  GW +FAE +SL  
Sbjct: 50  VPARFVR------FGPKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSD 109

Query: 61  GHFLVFRYESQSSSFHVVVFDISATEIEY 90
           GHFL F YE   S F VV+FD+SA+EIEY
Sbjct: 110 GHFLFFHYEG-DSCFRVVIFDVSASEIEY 131

[Close]

BLAST of MS020399 vs. ExPASy Swiss-Prot
Match: Q84R27 (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18960 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-09
Identity = 33/89 (37.08%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 1   IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGL 60
           IP +FV+     L  + LS  + L+   G + ++ L +    +WF +GW +FAE +S+  
Sbjct: 46  IPPRFVK-----LQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEE 105

Query: 61  GHFLVFRYESQSSSFHVVVFDISATEIEY 90
           GHFL+F Y+ ++SSF V++F++SA E +Y
Sbjct: 106 GHFLLFEYK-ENSSFRVIIFNVSACETKY 128

[Close]

BLAST of MS020399 vs. ExPASy Swiss-Prot
Match: Q9ZSH7 (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08
Identity = 33/89 (37.08%), Postives = 53/89 (59.55%), Query Frame = 0


Query: 1   IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGL 60
           IP +FV+     L  + LS  + L    G + ++ L +    +WF +GW +FAE +S+  
Sbjct: 46  IPPRFVK-----LQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEE 105

Query: 61  GHFLVFRYESQSSSFHVVVFDISATEIEY 90
           GHFL+F Y+ ++SSF V++F+ SA E  Y
Sbjct: 106 GHFLLFEYK-KNSSFRVIIFNASACETNY 128

[Close]

BLAST of MS020399 vs. ExPASy Swiss-Prot
Match: Q10GM3 (B3 domain-containing protein Os03g0622200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0622200 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.8e-07
Identity = 29/87 (33.33%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 1   IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSN-GRVWFSDGWQKFAEFYSLG 60
           +P +F   +NG      +S ++ L+   G  W++G+A S+ G +    GW++F +   + 
Sbjct: 46  VPARFANNFNG-----HISEEVNLRSPSGETWSIGVANSDAGELVLQPGWKEFVDGNGIE 105

Query: 61  LGHFLVFRYESQSSSFHVVVFDISATE 87
            G  L+FRY   SSSF V++FD S  E
Sbjct: 106 EGDCLLFRYSGVSSSFDVLIFDPSGCE 127

[Close]

BLAST of MS020399 vs. ExPASy TrEMBL
Match: A0A6J1DYT9 (B3 domain-containing transcription factor VRN1-like OS=Momordica charantia OX=3673 GN=LOC111024772 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.4e-43
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1   IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGL 60
           IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLG 
Sbjct: 277 IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGF 336

Query: 61  GHFLVFRYESQSSSFHVVVFDISATEIEY 90
           GHFLVFRYESQSSSFHVVVFDISATEIEY
Sbjct: 337 GHFLVFRYESQSSSFHVVVFDISATEIEY 365

[Close]

BLAST of MS020399 vs. ExPASy TrEMBL
Match: A0A5D3CPB8 (Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002620 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.0e-23
Identity = 58/91 (63.74%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 1   IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSL 60
           IP+KFVREY    +QALL  ++CLKV DG+EWN+GL KSN   RVWF  GW+K  EFYS+
Sbjct: 42  IPRKFVREYG---LQALLKDQVCLKVRDGKEWNVGLTKSNNGTRVWFHYGWEKLVEFYSV 101

Query: 61  GLGHFLVFRYESQSSSFHVVVFDISATEIEY 90
             G+FLVF+YE+QSSS +VV+FD +ATEIEY
Sbjct: 102 KSGYFLVFKYENQSSSLYVVIFDRTATEIEY 129

[Close]

BLAST of MS020399 vs. ExPASy TrEMBL
Match: A0A1S4E1Q2 (uncharacterized protein LOC103497524 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497524 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.0e-23
Identity = 58/91 (63.74%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 1   IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSL 60
           IP+KFVREY    +QALL  ++CLKV DG+EWN+GL KSN   RVWF  GW+K  EFYS+
Sbjct: 42  IPRKFVREYG---LQALLKDQVCLKVRDGKEWNVGLTKSNNGTRVWFHYGWEKLVEFYSV 101

Query: 61  GLGHFLVFRYESQSSSFHVVVFDISATEIEY 90
             G+FLVF+YE+QSSS +VV+FD +ATEIEY
Sbjct: 102 KSGYFLVFKYENQSSSLYVVIFDRTATEIEY 129

[Close]

BLAST of MS020399 vs. ExPASy TrEMBL
Match: A0A1S3C7C6 (putative B3 domain-containing protein Os03g0621600 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497524 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.0e-23
Identity = 58/91 (63.74%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 1   IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNG--RVWFSDGWQKFAEFYSL 60
           IP+KFVREY    +QALL  ++CLKV DG+EWN+GL KSN   RVWF  GW+K  EFYS+
Sbjct: 42  IPRKFVREYG---LQALLKDQVCLKVRDGKEWNVGLTKSNNGTRVWFHYGWEKLVEFYSV 101

Query: 61  GLGHFLVFRYESQSSSFHVVVFDISATEIEY 90
             G+FLVF+YE+QSSS +VV+FD +ATEIEY
Sbjct: 102 KSGYFLVFKYENQSSSLYVVIFDRTATEIEY 129

[Close]

BLAST of MS020399 vs. ExPASy TrEMBL
Match: A0A6J1I7N8 (B3 domain-containing protein REM8-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470376 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.2e-22
Identity = 54/89 (60.67%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 1   IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGL 60
           IPKKFV EY    ++A  ++   LKVADG EW +G+ KS+GRVWF  GWQKF EFY++GL
Sbjct: 43  IPKKFVGEYG---LKAFENNPTRLKVADGEEWEVGVTKSDGRVWFDYGWQKFVEFYNVGL 102

Query: 61  GHFLVFRYESQSSSFHVVVFDISATEIEY 90
            +FLVF+YE +SS FHVV+FD +ATEI+Y
Sbjct: 103 EYFLVFKYELRSSCFHVVIFDPTATEIKY 128

[Close]

BLAST of MS020399 vs. TAIR 10
Match: AT3G18990.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 80.1 bits (196), Expect = 9.9e-16
Identity = 37/89 (41.57%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 1   IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGL 60
           +P KFV ++        LS  + L V DG  W +GL K++ ++WF DGWQ+F + YS+ +
Sbjct: 22  VPDKFVSKFKDE-----LSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRI 81

Query: 61  GHFLVFRYESQSSSFHVVVFDISATEIEY 90
           G+ L+FRYE  +S+F V +F++S +EI Y
Sbjct: 82  GYLLIFRYEG-NSAFSVYIFNLSHSEINY 104

[Close]

BLAST of MS020399 vs. TAIR 10
Match: AT1G49475.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-11
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 1   IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGL 60
           +P +FVR          L+  + L+   G + ++ + +    VWF  GW +FAE +SL  
Sbjct: 50  VPARFVR------FGPKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSD 109

Query: 61  GHFLVFRYESQSSSFHVVVFDISATEIEY 90
           GHFL F YE   S F VV+FD+SA+EIEY
Sbjct: 110 GHFLFFHYEG-DSCFRVVIFDVSASEIEY 131

[Close]

BLAST of MS020399 vs. TAIR 10
Match: AT3G18960.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 63.5 bits (153), Expect = 9.6e-11
Identity = 33/89 (37.08%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 1   IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGL 60
           IP +FV+     L  + LS  + L+   G + ++ L +    +WF +GW +FAE +S+  
Sbjct: 46  IPPRFVK-----LQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEE 105

Query: 61  GHFLVFRYESQSSSFHVVVFDISATEIEY 90
           GHFL+F Y+ ++SSF V++F++SA E +Y
Sbjct: 106 GHFLLFEYK-ENSSFRVIIFNVSACETKY 128

[Close]

BLAST of MS020399 vs. TAIR 10
Match: AT4G01580.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 60.5 bits (145), Expect = 8.1e-10
Identity = 33/89 (37.08%), Postives = 53/89 (59.55%), Query Frame = 0


Query: 1   IPKKFVREYNGVLVQALLSSKMCLKVADGREWNLGLAKSNGRVWFSDGWQKFAEFYSLGL 60
           IP +FV+     L  + LS  + L    G + ++ L +    +WF +GW +FAE +S+  
Sbjct: 46  IPPRFVK-----LQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEE 105

Query: 61  GHFLVFRYESQSSSFHVVVFDISATEIEY 90
           GHFL+F Y+ ++SSF V++F+ SA E  Y
Sbjct: 106 GHFLLFEYK-KNSSFRVIIFNASACETNY 128

The following BLAST results are available for this feature:

BLAST of MS020399 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158239.1	1.5e-42	98.88	B3 domain-containing transcription factor VRN1-like [Momordica charantia]	[more]
XP_038900379.1	5.4e-24	63.74	B3 domain-containing transcription factor VRN1-like [Benincasa hispida]	[more]
XP_016902156.1	2.1e-23	63.74	PREDICTED: uncharacterized protein LOC103497524 isoform X1 [Cucumis melo]	[more]
XP_008457959.1	2.1e-23	63.74	PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X2 [Cucumi...	[more]
KAA0045855.1	2.1e-23	63.74	putative B3 domain-containing protein [Cucumis melo var. makuwa] >TYK13733.1 put...	[more]

BLAST of MS020399 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L3W1	1.4e-14	41.57	B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9XIB4	3.6e-10	40.45	B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana OX=3702 GN=At1g49...	[more]
Q84R27	1.3e-09	37.08	B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18...	[more]
Q9ZSH7	1.1e-08	37.08	B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01...	[more]
Q10GM3	4.8e-07	33.33	B3 domain-containing protein Os03g0622200 OS=Oryza sativa subsp. japonica OX=399...	[more]

BLAST of MS020399 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DYT9	7.4e-43	98.88	B3 domain-containing transcription factor VRN1-like OS=Momordica charantia OX=36...	[more]
A0A5D3CPB8	1.0e-23	63.74	Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S4E1Q2	1.0e-23	63.74	uncharacterized protein LOC103497524 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C7C6	1.0e-23	63.74	putative B3 domain-containing protein Os03g0621600 isoform X2 OS=Cucumis melo OX...	[more]
A0A6J1I7N8	7.2e-22	60.67	B3 domain-containing protein REM8-like isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of MS020399 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18990.1	9.9e-16	41.57	AP2/B3-like transcriptional factor family protein	[more]
AT1G49475.1	2.5e-11	40.45	AP2/B3-like transcriptional factor family protein	[more]
AT3G18960.1	9.6e-11	37.08	AP2/B3-like transcriptional factor family protein	[more]
AT4G01580.1	8.1e-10	37.08	AP2/B3-like transcriptional factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	SMART	SM01019	B3_2	coord: 1..83 e-value: 0.0028 score: 24.6
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 1..81 e-value: 8.1E-14 score: 51.3
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 1..83 score: 14.409562
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 1..81 e-value: 2.17479E-18 score: 70.8197
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 1..84 e-value: 1.3E-19 score: 71.9
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 1..83
None	No IPR available	PANTHER	PTHR31920:SF49	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE	coord: 1..89
None	No IPR available	PANTHER	PTHR31920	B3 DOMAIN-CONTAINING	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020399.1	MS020399.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding