MS020390 (gene) Bitter gourd (TR) v1

Overview
NameMS020390
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein JINGUBANG-like isoform X3
Locationscaffold211: 181960 .. 182409 (-)
RNA-Seq ExpressionMS020390
SyntenyMS020390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGGCCGGTCAGCACCGACAAGCACGCGTGCTCCGACGCCGTCCTCTGCCACACGCAGATCCCCATATCGGCGGAGCCGCTCAGCAACAGGCGGCCGGCGGTGGCCAAACAGAGAATCGCAAGTTTATGGCCTCGCAGAGATCCGCTGTGCGACAGAGACTTCTCCCGCTCCCAGAAATTGACGAGTCCGTCGGAGGAGCCGCAGTACACAAACGACGCCTCCTCGTTGACGGCGAGAGCGGTGATGGCGCATTCCTGCTTCACCAGCGTCTGCGAGAAGAAATGTTTGGTTCCTTTACCTTGAAGCTCCCGCCGCCACACCTTGACGCTGCCGTCGGCGGATCCGGTGAACACCAATCCGTCGATACTGGAGACGAGAGTGTTGACGGCGTCGTCGTGAGCCTGAATCGATTCCAAACATTTCGAGTCGGAAACTCTCCAGACCTTGAA

mRNA sequence

GTGGCCGGTCAGCACCGACAAGCACGCGTGCTCCGACGCCGTCCTCTGCCACACGCAGATCCCCATATCGGCGGAGCCGCTCAGCAACAGGCGGCCGGCGGTGGCCAAACAGAGAATCGCAAGTTTATGGCCTCGCAGAGATCCGCTGTGCGACAGAGACTTCTCCCGCTCCCAGAAATTGACGAGTCCGTCGGAGGAGCCGCAGTACACAAACGACGCCTCCTCGTTGACGGCGAGAGCGGTGATGGCGCATTCCTGCTTCACCAGCGTCTGCGAGAAGAAATGTTTGGTTCCTTTACCTTGAAGCTCCCGCCGCCACACCTTGACGCTGCCGTCGGCGGATCCGGTGAACACCAATCCGTCGATACTGGAGACGAGAGTGTTGACGGCGTCGTCGTGAGCCTGAATCGATTCCAAACATTTCGAGTCGGAAACTCTCCAGACCTTGAA

Coding sequence (CDS)

GTGGCCGGTCAGCACCGACAAGCACGCGTGCTCCGACGCCGTCCTCTGCCACACGCAGATCCCCATATCGGCGGAGCCGCTCAGCAACAGGCGGCCGGCGGTGGCCAAACAGAGAATCGCAAGTTTATGGCCTCGCAGAGATCCGCTGTGCGACAGAGACTTCTCCCGCTCCCAGAAATTGACGAGTCCGTCGGAGGAGCCGCAGTACACAAACGACGCCTCCTCGTTGACGGCGAGAGCGGTGATGGCGCATTCCTGCTTCACCAGCGTCTGCGAGAAGAAATGTTTGGTTCCTTTACCTTGAAGCTCCCGCCGCCACACCTTGACGCTGCCGTCGGCGGATCCGGTGAACACCAATCCGTCGATACTGGAGACGAGAGTGTTGACGGCGTCGTCGTGAGCCTGAATCGATTCCAAACATTTCGAGTCGGAAACTCTCCAGACCTTGAA

Protein sequence

VAGQHRQARVLRRRPLPHADPHIGGAAQQQAAGGGQTENRKFMASQRSAVRQRLLPLPEIDESVGGAAVHKRRLLVDGESGDGAFLLHQRLREEMFGSFTLKLPPPHLDAAVGGSGEHQSVDTGDESVDGVVVSLNRFQTFRVGNSPDLE
Homology
BLAST of MS020390 vs. NCBI nr
Match: QEX51262.1 (protein JINGUBANG-like isoform X3, partial [Cymbidium ensifolium])

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-10
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 0

Query: 41  KFMASQRSAVRQRL---LPLPEIDESVGGAAVHKRRLLVDGESGDGAFLLHQRLREEMFG 100
           +FM  Q  A+ + L   LPLPEIDE +GG AV  R    D + GD   L  Q L+  +  
Sbjct: 1   EFMTMQCPAMNELLPLPLPLPEIDEPIGGGAVQDRSRGADNKRGDSTVLFQQHLKCFVLC 60

Query: 101 SFTLKLPPPHLDAAVGGSGEHQSVDT-GDESVDGVVVSLNRFQTFRVG 145
           S  L+ P PHL  A+G +GE +  +  GD  VDGV+V     +  RVG
Sbjct: 61  SLALQFPQPHLHGAIGRAGEDEGTEARGDHRVDGVIVCNEGLEALRVG 108

BLAST of MS020390 vs. NCBI nr
Match: KAF7828779.1 (uncharacterized protein G2W53_019943 [Senna tora])

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-07
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = 0

Query: 95  MFGSFTLKLPPPHLDAAVGGSGEHQSVDTGDESVDGVVVSLNRFQTFRVGNSPDLE 151
           M GSF L LPPPHL  AV G+G  QSV +  + V+GVVVS   FQ F VG SPDLE
Sbjct: 1   MLGSFPLYLPPPHLHGAVCGAGVDQSVKSHHQGVNGVVVSGYGFQAFEVGGSPDLE 56

BLAST of MS020390 vs. NCBI nr
Match: QEX51263.1 (protein JINGUBANG-like isoform X4, partial [Cymbidium ensifolium])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-06
Identity = 49/152 (32.24%), Postives = 73/152 (48.03%), Query Frame = 0

Query: 4   QHRQARVLRR--RPLPHADPHIGGAAQQQAAGGGQTENRKFMASQRSAVRQRLLPLPEID 63
           QHR+  V      P PHA   IG + + Q    GQT++R+FMA Q S   Q +LP PE  
Sbjct: 54  QHREPHVSSPVILPTPHAYRFIGRSRKHQIPRQGQTQHREFMAVQYSPTHQ-ILP-PETH 113

Query: 64  ESVGGAAVHKRRLLVDGESGDGAFLLHQRL---REEMFGSFTLKLPPPHLDAAVGGSGEH 123
             +   AV + R     +S       HQ L             +L PPHL+  VG +GE+
Sbjct: 114 PPIRRPAVQQTRTQTHTQSRHRRLQPHQHLHLHNPPPGLGLAPRLNPPHLNRPVGRTGEN 173

Query: 124 QSVDTGDESVDGVVVSLNRFQTFRVGNSPDLE 151
           + V+     ++ V+V ++R +   +GN P+ E
Sbjct: 174 EPVEPNYNRINRVLVGVDRVEASGIGNPPEFE 203

BLAST of MS020390 vs. ExPASy TrEMBL
Match: A0A5J6NB00 (Protein JINGUBANG-like isoform X3 (Fragment) OS=Cymbidium ensifolium OX=78740 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 9.6e-11
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 0

Query: 41  KFMASQRSAVRQRL---LPLPEIDESVGGAAVHKRRLLVDGESGDGAFLLHQRLREEMFG 100
           +FM  Q  A+ + L   LPLPEIDE +GG AV  R    D + GD   L  Q L+  +  
Sbjct: 1   EFMTMQCPAMNELLPLPLPLPEIDEPIGGGAVQDRSRGADNKRGDSTVLFQQHLKCFVLC 60

Query: 101 SFTLKLPPPHLDAAVGGSGEHQSVDT-GDESVDGVVVSLNRFQTFRVG 145
           S  L+ P PHL  A+G +GE +  +  GD  VDGV+V     +  RVG
Sbjct: 61  SLALQFPQPHLHGAIGRAGEDEGTEARGDHRVDGVIVCNEGLEALRVG 108

BLAST of MS020390 vs. ExPASy TrEMBL
Match: A0A0D3CNY2 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.0e-08
Identity = 47/154 (30.52%), Postives = 80/154 (51.95%), Query Frame = 0

Query: 1   VAGQHRQARVLRRRPLPHADPHIGGAAQQQAAGGGQTENRKFMASQRSAVRQRLL--PLP 60
           +  Q+R  RV      PHA   I    + Q +   + E+ K M  + + + Q  L   LP
Sbjct: 46  MTSQNRHTRVNSPFSPPHAYLLIRRTTKHQFSSCREAEHSKPMLLENTTMLQHFLLSHLP 105

Query: 61  EIDESVGGAAVHKRRLLVDGESGDGAFLLHQRLREEMFGSFTLKLPPPHLDAAVGGSGEH 120
            I  +V    +H  R +   +S +  FL  Q L + M  +    LP P+L+ ++G + E 
Sbjct: 106 IIHSTVARTTIH--RHVASNQSRNSRFLFQQSLNQTMRSTLPANLPFPNLNRSLGRASED 165

Query: 121 QSV--DTGDESVDGVVVSLNRFQTFRVGNSPDLE 151
           +++   +G + VDGV++S NRFQTF++ N+P+L+
Sbjct: 166 KTLAGTSGYDGVDGVIMSFNRFQTFQIVNAPNLD 197

BLAST of MS020390 vs. ExPASy TrEMBL
Match: A0A5J6N997 (Protein JINGUBANG-like isoform X4 (Fragment) OS=Cymbidium ensifolium OX=78740 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.9e-07
Identity = 49/152 (32.24%), Postives = 73/152 (48.03%), Query Frame = 0

Query: 4   QHRQARVLRR--RPLPHADPHIGGAAQQQAAGGGQTENRKFMASQRSAVRQRLLPLPEID 63
           QHR+  V      P PHA   IG + + Q    GQT++R+FMA Q S   Q +LP PE  
Sbjct: 54  QHREPHVSSPVILPTPHAYRFIGRSRKHQIPRQGQTQHREFMAVQYSPTHQ-ILP-PETH 113

Query: 64  ESVGGAAVHKRRLLVDGESGDGAFLLHQRL---REEMFGSFTLKLPPPHLDAAVGGSGEH 123
             +   AV + R     +S       HQ L             +L PPHL+  VG +GE+
Sbjct: 114 PPIRRPAVQQTRTQTHTQSRHRRLQPHQHLHLHNPPPGLGLAPRLNPPHLNRPVGRTGEN 173

Query: 124 QSVDTGDESVDGVVVSLNRFQTFRVGNSPDLE 151
           + V+     ++ V+V ++R +   +GN P+ E
Sbjct: 174 EPVEPNYNRINRVLVGVDRVEASGIGNPPEFE 203

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
QEX51262.12.0e-1040.74protein JINGUBANG-like isoform X3, partial [Cymbidium ensifolium][more]
KAF7828779.13.5e-0760.71uncharacterized protein G2W53_019943 [Senna tora][more]
QEX51263.11.0e-0632.24protein JINGUBANG-like isoform X4, partial [Cymbidium ensifolium][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5J6NB009.6e-1140.74Protein JINGUBANG-like isoform X3 (Fragment) OS=Cymbidium ensifolium OX=78740 PE... [more]
A0A0D3CNY22.0e-0830.52Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1[more]
A0A5J6N9974.9e-0732.24Protein JINGUBANG-like isoform X4 (Fragment) OS=Cymbidium ensifolium OX=78740 PE... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS020390.1MS020390.1mRNA