MS020375 (gene) Bitter gourd (TR) v1

Overview
NameMS020375
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold211: 33657 .. 33908 (+)
RNA-Seq ExpressionMS020375
SyntenyMS020375
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGTATAAAAAATGGGCAGAAGCAGATGCAATTTTTTTGCAAAAGCTAAGTTCAAAGAAGATGATGGGAGAGAAGGGTTGTTCTTCTAATTTGTTTGGATCATCAGAAACATTTAGTAACGGTGAGATAATTAACTATCTCAGGCAAAGGTATTTGAGAAGCTATAAATTTGAAGTTGAGAAGCAAAAAGAAACTCCGTTTCAAAAGGCAAAGAAGTGGTTCATCTTCATGATGTTGTGTTGTAAAGTTAGT

mRNA sequence

AAGTATAAAAAATGGGCAGAAGCAGATGCAATTTTTTTGCAAAAGCTAAGTTCAAAGAAGATGATGGGAGAGAAGGGTTGTTCTTCTAATTTGTTTGGATCATCAGAAACATTTAGTAACGGTGAGATAATTAACTATCTCAGGCAAAGGTATTTGAGAAGCTATAAATTTGAAGTTGAGAAGCAAAAAGAAACTCCGTTTCAAAAGGCAAAGAAGTGGTTCATCTTCATGATGTTGTGTTGTAAAGTTAGT

Coding sequence (CDS)

AAGTATAAAAAATGGGCAGAAGCAGATGCAATTTTTTTGCAAAAGCTAAGTTCAAAGAAGATGATGGGAGAGAAGGGTTGTTCTTCTAATTTGTTTGGATCATCAGAAACATTTAGTAACGGTGAGATAATTAACTATCTCAGGCAAAGGTATTTGAGAAGCTATAAATTTGAAGTTGAGAAGCAAAAAGAAACTCCGTTTCAAAAGGCAAAGAAGTGGTTCATCTTCATGATGTTGTGTTGTAAAGTTAGT

Protein sequence

KYKKWAEADAIFLQKLSSKKMMGEKGCSSNLFGSSETFSNGEIINYLRQRYLRSYKFEVEKQKETPFQKAKKWFIFMMLCCKVS
Homology
BLAST of MS020375 vs. NCBI nr
Match: XP_023006822.1 (uncharacterized protein LOC111499491 [Cucurbita maxima])

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-08
Identity = 41/74 (55.41%), Postives = 47/74 (63.51%), Query Frame = 0

Query: 4   KWAEADAIFLQKLSSKKMMGEKGCSSNLFGS---SETFSNGEIINYLRQRYLRSYKFEVE 63
           KWAEADA FLQ+LS  K M E   SS+   S    ET  N EI  Y RQR+LRSY F VE
Sbjct: 268 KWAEADATFLQRLSLNKNMTEISSSSSHCSSLLGFETNRNNEIFKYSRQRFLRSYTFSVE 327

Query: 64  KQKETPFQKAKKWF 75
           ++K   F KA+KWF
Sbjct: 328 EKKTKRFGKARKWF 341

BLAST of MS020375 vs. NCBI nr
Match: KAG6605255.1 (hypothetical protein SDJN03_02572, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.6 bits (166), Expect = 3.0e-08
Identity = 42/76 (55.26%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 4   KWAEADAIFLQKLSSKKMMGEKG-----CSSNLFGSSETFSNGEIINYLRQRYLRSYKFE 63
           KWAEADA FLQ+LS  K M E       CSS L    ET  N EI  Y RQR+LRSY F 
Sbjct: 38  KWAEADATFLQRLSLNKNMTEISSYSLHCSSLL--GFETNRNNEIFKYSRQRFLRSYTFS 97

Query: 64  VEKQKETPFQKAKKWF 75
           VE++K   F KA+KWF
Sbjct: 98  VEEKKTKRFGKARKWF 111

BLAST of MS020375 vs. NCBI nr
Match: KGN62030.1 (hypothetical protein Csa_006081 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 9.7e-07
Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 0

Query: 1   KYKKWAEADAIFLQKLSSKKMMGEK----------GCSSNLFGSSETFSNGEIINYLRQR 60
           K +KWAEADA+FL+KLS  K   EK          G SS++FG  E + + +IINY RQR
Sbjct: 16  KQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFG-FEKYRSNDIINYSRQR 75

Query: 61  YLRSYKF-------EVEK-QKETPFQKAKKWF 75
           YLRSYKF       +V++ QK +PF+K   +F
Sbjct: 76  YLRSYKFNDDHKEDDVDQVQKTSPFEKVINFF 106

BLAST of MS020375 vs. ExPASy TrEMBL
Match: A0A6J1KWW2 (uncharacterized protein LOC111499491 OS=Cucurbita maxima OX=3661 GN=LOC111499491 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.0e-09
Identity = 41/74 (55.41%), Postives = 47/74 (63.51%), Query Frame = 0

Query: 4   KWAEADAIFLQKLSSKKMMGEKGCSSNLFGS---SETFSNGEIINYLRQRYLRSYKFEVE 63
           KWAEADA FLQ+LS  K M E   SS+   S    ET  N EI  Y RQR+LRSY F VE
Sbjct: 268 KWAEADATFLQRLSLNKNMTEISSSSSHCSSLLGFETNRNNEIFKYSRQRFLRSYTFSVE 327

Query: 64  KQKETPFQKAKKWF 75
           ++K   F KA+KWF
Sbjct: 328 EKKTKRFGKARKWF 341

BLAST of MS020375 vs. ExPASy TrEMBL
Match: A0A0A0LJK1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287120 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.7e-07
Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 0

Query: 1   KYKKWAEADAIFLQKLSSKKMMGEK----------GCSSNLFGSSETFSNGEIINYLRQR 60
           K +KWAEADA+FL+KLS  K   EK          G SS++FG  E + + +IINY RQR
Sbjct: 16  KQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFG-FEKYRSNDIINYSRQR 75

Query: 61  YLRSYKF-------EVEK-QKETPFQKAKKWF 75
           YLRSYKF       +V++ QK +PF+K   +F
Sbjct: 76  YLRSYKFNDDHKEDDVDQVQKTSPFEKVINFF 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023006822.11.0e-0855.41uncharacterized protein LOC111499491 [Cucurbita maxima][more]
KAG6605255.13.0e-0855.26hypothetical protein SDJN03_02572, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN62030.19.7e-0746.74hypothetical protein Csa_006081 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KWW25.0e-0955.41uncharacterized protein LOC111499491 OS=Cucurbita maxima OX=3661 GN=LOC111499491... [more]
A0A0A0LJK14.7e-0746.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287120 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS020375.1MS020375.1mRNA