MS020316 (gene) Bitter gourd (TR) v1

Overview
NameMS020316
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAnaphase-promoting complex subunit 4
Locationscaffold665: 956649 .. 956795 (-)
RNA-Seq ExpressionMS020316
SyntenyMS020316
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGTACTAGGCCTTCCAAGATCGTGTGCATGCTTTTTGGGTGTTGGTTTGGACGAAAAGCTAGTAAATAATGCTGATAAAAAGGCTGGTTTATTACTCGTGCAAGTTGACAGTTTTATGAGGCTGCTTTCAACAGTGTTTCAGCAA

mRNA sequence

AAGGTACTAGGCCTTCCAAGATCGTGTGCATGCTTTTTGGGTGTTGGTTTGGACGAAAAGCTAGTAAATAATGCTGATAAAAAGGCTGGTTTATTACTCGTGCAAGTTGACAGTTTTATGAGGCTGCTTTCAACAGTGTTTCAGCAA

Coding sequence (CDS)

AAGGTACTAGGCCTTCCAAGATCGTGTGCATGCTTTTTGGGTGTTGGTTTGGACGAAAAGCTAGTAAATAATGCTGATAAAAAGGCTGGTTTATTACTCGTGCAAGTTGACAGTTTTATGAGGCTGCTTTCAACAGTGTTTCAGCAA

Protein sequence

KVLGLPRSCACFLGVGLDEKLVNNADKKAGLLLVQVDSFMRLLSTVFQQ
Homology
BLAST of MS020316 vs. NCBI nr
Match: XP_022142094.1 (anaphase-promoting complex subunit 4 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 8.7e-08
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 0

Query: 1   KVLGLPRSCACFLGVGLDEKLVNNADKKAGLLLVQVDSFMRLLSTVFQQ 50
           ++LGL R  A F GVGLDE+L+NNA +KAG+LLVQVD FMR+LSTV QQ
Sbjct: 401 ELLGLSRWRARFQGVGLDEELINNAMEKAGMLLVQVDRFMRVLSTVLQQ 449

BLAST of MS020316 vs. NCBI nr
Match: XP_027345537.1 (anaphase-promoting complex subunit 4 isoform X1 [Abrus precatorius])

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 0

Query: 4   GLPRSCACFLGVGLDEKLVNNADKKAGLLLVQVDSFMRLLSTVFQQ 50
           GL R  A +LG+GLDE L+NNA +KAG+LLVQV+ FMR+LS+V QQ
Sbjct: 425 GLSRWHARYLGIGLDESLINNATEKAGMLLVQVERFMRVLSSVVQQ 470

BLAST of MS020316 vs. NCBI nr
Match: XP_027345540.1 (anaphase-promoting complex subunit 4 isoform X4 [Abrus precatorius])

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 0

Query: 4   GLPRSCACFLGVGLDEKLVNNADKKAGLLLVQVDSFMRLLSTVFQQ 50
           GL R  A +LG+GLDE L+NNA +KAG+LLVQV+ FMR+LS+V QQ
Sbjct: 345 GLSRWHARYLGIGLDESLINNATEKAGMLLVQVERFMRVLSSVVQQ 390

BLAST of MS020316 vs. NCBI nr
Match: XP_027345539.1 (anaphase-promoting complex subunit 4 isoform X3 [Abrus precatorius])

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 0

Query: 4   GLPRSCACFLGVGLDEKLVNNADKKAGLLLVQVDSFMRLLSTVFQQ 50
           GL R  A +LG+GLDE L+NNA +KAG+LLVQV+ FMR+LS+V QQ
Sbjct: 425 GLSRWHARYLGIGLDESLINNATEKAGMLLVQVERFMRVLSSVVQQ 470

BLAST of MS020316 vs. NCBI nr
Match: XP_027345538.1 (anaphase-promoting complex subunit 4 isoform X2 [Abrus precatorius])

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 0

Query: 4   GLPRSCACFLGVGLDEKLVNNADKKAGLLLVQVDSFMRLLSTVFQQ 50
           GL R  A +LG+GLDE L+NNA +KAG+LLVQV+ FMR+LS+V QQ
Sbjct: 404 GLSRWHARYLGIGLDESLINNATEKAGMLLVQVERFMRVLSSVVQQ 449

BLAST of MS020316 vs. ExPASy Swiss-Prot
Match: O65418 (Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=APC4 PE=2 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 8.5e-06
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 0

Query: 4   GLPRSCACFLGVGLDEKLVNNADKKAGLLLVQVDSFMRLLSTVFQQ 50
           GL R  A + G+GLDE L+N A +  GLLLVQV  FM +LS+V QQ
Sbjct: 407 GLSRWRARYQGIGLDEMLLNEATENTGLLLVQVQRFMMVLSSVVQQ 452

BLAST of MS020316 vs. ExPASy TrEMBL
Match: A0A6J1CKL4 (Anaphase-promoting complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC111012308 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.2e-08
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 0

Query: 1   KVLGLPRSCACFLGVGLDEKLVNNADKKAGLLLVQVDSFMRLLSTVFQQ 50
           ++LGL R  A F GVGLDE+L+NNA +KAG+LLVQVD FMR+LSTV QQ
Sbjct: 401 ELLGLSRWRARFQGVGLDEELINNAMEKAGMLLVQVDRFMRVLSTVLQQ 449

BLAST of MS020316 vs. ExPASy TrEMBL
Match: A0A5D3BMY3 (Anaphase-promoting complex subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00330 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 1   KVLGLPRSCACFLGVGLDEKLVNNADKKAGLLLVQVDSFMRLLSTVFQQ 50
           ++LG+ R  A F GVGLDEKL++NA +K G LLVQV+ FMR+LSTV QQ
Sbjct: 469 ELLGISRWRARFQGVGLDEKLMHNATEKVGTLLVQVERFMRVLSTVLQQ 517

BLAST of MS020316 vs. ExPASy TrEMBL
Match: A0A5A7TZ68 (Anaphase-promoting complex subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001730 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 1   KVLGLPRSCACFLGVGLDEKLVNNADKKAGLLLVQVDSFMRLLSTVFQQ 50
           ++LG+ R  A F GVGLDEKL++NA +K G LLVQV+ FMR+LSTV QQ
Sbjct: 463 ELLGISRWRARFQGVGLDEKLMHNATEKVGTLLVQVERFMRVLSTVLQQ 511

BLAST of MS020316 vs. ExPASy TrEMBL
Match: A0A0A0LUA0 (Anaphase-promoting complex subunit 4 OS=Cucumis sativus OX=3659 GN=Csa_1G386570 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 1   KVLGLPRSCACFLGVGLDEKLVNNADKKAGLLLVQVDSFMRLLSTVFQQ 50
           ++LG+ R  A F GVGLDEKL++NA +K G LLVQV+ FMR+LSTV QQ
Sbjct: 399 ELLGISRWRARFQGVGLDEKLMHNATEKVGTLLVQVERFMRVLSTVLQQ 447

BLAST of MS020316 vs. ExPASy TrEMBL
Match: A0A1S3CJ41 (Anaphase-promoting complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103501540 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 1   KVLGLPRSCACFLGVGLDEKLVNNADKKAGLLLVQVDSFMRLLSTVFQQ 50
           ++LG+ R  A F GVGLDEKL++NA +K G LLVQV+ FMR+LSTV QQ
Sbjct: 399 ELLGISRWRARFQGVGLDEKLMHNATEKVGTLLVQVERFMRVLSTVLQQ 447

BLAST of MS020316 vs. TAIR 10
Match: AT4G21530.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 6.0e-07
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 0

Query: 4   GLPRSCACFLGVGLDEKLVNNADKKAGLLLVQVDSFMRLLSTVFQQ 50
           GL R  A + G+GLDE L+N A +  GLLLVQV  FM +LS+V QQ
Sbjct: 407 GLSRWRARYQGIGLDEMLLNEATENTGLLLVQVQRFMMVLSSVVQQ 452

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022142094.18.7e-0869.39anaphase-promoting complex subunit 4 [Momordica charantia][more]
XP_027345537.12.2e-0665.22anaphase-promoting complex subunit 4 isoform X1 [Abrus precatorius][more]
XP_027345540.12.2e-0665.22anaphase-promoting complex subunit 4 isoform X4 [Abrus precatorius][more]
XP_027345539.12.2e-0665.22anaphase-promoting complex subunit 4 isoform X3 [Abrus precatorius][more]
XP_027345538.12.2e-0665.22anaphase-promoting complex subunit 4 isoform X2 [Abrus precatorius][more]
Match NameE-valueIdentityDescription
O654188.5e-0656.52Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=APC4 PE=... [more]
Match NameE-valueIdentityDescription
A0A6J1CKL44.2e-0869.39Anaphase-promoting complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A5D3BMY31.8e-0663.27Anaphase-promoting complex subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7TZ681.8e-0663.27Anaphase-promoting complex subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A0A0LUA01.8e-0663.27Anaphase-promoting complex subunit 4 OS=Cucumis sativus OX=3659 GN=Csa_1G386570 ... [more]
A0A1S3CJ411.8e-0663.27Anaphase-promoting complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103501540 PE=... [more]
Match NameE-valueIdentityDescription
AT4G21530.16.0e-0756.52Transducin/WD40 repeat-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS020316.1MS020316.1mRNA