MS020315 (gene) Bitter gourd (TR) v1

Overview
NameMS020315
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold665: 946478 .. 946823 (-)
RNA-Seq ExpressionMS020315
SyntenyMS020315
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACGCCGGATTCCACGTGGACATGAATCCTAGTCAGCACCTCCGACTTTTCTTTTTAAAGACCCCGAAGACTTCTCATTTCTCTTCCATCGTCCACTGAAAGAAAGCCGAGAGCGTACTTAAGTCTTAAACCGAGTTCATTTCTACCTTCCGTCTCCCTGATTTTCTTGGCCGGCGGCTACTGTACCACGCCGGAAAATACGCTCCTCGCCGGAAATTATGGAGTTTCTTATCTTCGGTTGCGTTGCAGATACGGTCTGGGCACTCTGACCGTATCTGATTTCCCCAAGCAAAAGCGACTTTACTTGGCTGAGTTTCGAAGTTATTCCATATTCTGTTTAAAAATA

mRNA sequence

CACGCCGGATTCCACGTGGACATGAATCCTAGTCAGCACCTCCGACTTTTCTTTTTAAAGACCGAAGACTTCTCATTTCTCTTCCATCGTCCACTGAAAGAAAGCCGAGAGCGTACTCTTAAACCGAGTTCATTTCTACCTTCCGTCTCCCTGATTTTCTTGGCCGGCGGCTACTGTACCACGCCGGAAAATACGCTCCTCGCCGGAAATTATGGAGTTTCTTATCTTCGGTTGCGTTGCAGATACGGTCTGGGCACTCTGACCGTATCTGATTTCCCCAAGCAAAAGCGACTTTACTTGGCTGAGTTTCGAAGTTATTCCATATTCTGTTTAAAAATA

Coding sequence (CDS)

CACGCCGGATTCCACGTGGACATGAATCCTAGTCAGCACCTCCGACTTTTCTTTTTAAAGACCGAAGACTTCTCATTTCTCTTCCATCGTCCACTGAAAGAAAGCCGAGAGCGTACTCTTAAACCGAGTTCATTTCTACCTTCCGTCTCCCTGATTTTCTTGGCCGGCGGCTACTGTACCACGCCGGAAAATACGCTCCTCGCCGGAAATTATGGAGTTTCTTATCTTCGGTTGCGTTGCAGATACGGTCTGGGCACTCTGACCGTATCTGATTTCCCCAAGCAAAAGCGACTTTACTTGGCTGAGTTTCGAAGTTATTCCATATTCTGTTTAAAAATA

Protein sequence

HAGFHVDMNPSQHLRLFFLKTEDFSFLFHRPLKESRERTLKPSSFLPSVSLIFLAGGYCTTPENTLLAGNYGVSYLRLRCRYGLGTLTVSDFPKQKRLYLAEFRSYSIFCLKI
Homology
[Close]
BLAST of MS020315 vs. NCBI nr
Match: KGN61696.1 (hypothetical protein Csa_006426 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 4.5e-23
Identity = 66/110 (60.00%), Postives = 77/110 (70.00%), Query Frame = 0 

Query: 5   HVDMNPSQ-HLRLFFLKT-EDFSFLFHRPLKESRERTLKPSSFLPSVSLIFLAGGYCTTP 64
           +VD+NPSQ HL   FL   +DFSFLFHR LK+SR RT  P   L   +  F +G    +P
Sbjct: 7   YVDINPSQPHLSFLFLNVFQDFSFLFHRRLKKSRARTQNPEFVL---TFSFSSGDRPNSP 66

Query: 65  ENTLLAGNYGVSYLRLRCRYGLGTLTVSDFPKQKRLYLAEFRSYSIFCLK 113
           E   L+ +YGVSY RLR RYGL TLTVS F K+KRLYLAEFRSYSIFCL+
Sbjct: 67  ETLFLSRSYGVSYDRLRSRYGLSTLTVSGFLKRKRLYLAEFRSYSIFCLE 113

[Close]
BLAST of MS020315 vs. ExPASy TrEMBL
Match: A0A0A0LNW3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G225350 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.2e-23
Identity = 66/110 (60.00%), Postives = 77/110 (70.00%), Query Frame = 0 

Query: 5   HVDMNPSQ-HLRLFFLKT-EDFSFLFHRPLKESRERTLKPSSFLPSVSLIFLAGGYCTTP 64
           +VD+NPSQ HL   FL   +DFSFLFHR LK+SR RT  P   L   +  F +G    +P
Sbjct: 7   YVDINPSQPHLSFLFLNVFQDFSFLFHRRLKKSRARTQNPEFVL---TFSFSSGDRPNSP 66

Query: 65  ENTLLAGNYGVSYLRLRCRYGLGTLTVSDFPKQKRLYLAEFRSYSIFCLK 113
           E   L+ +YGVSY RLR RYGL TLTVS F K+KRLYLAEFRSYSIFCL+
Sbjct: 67  ETLFLSRSYGVSYDRLRSRYGLSTLTVSGFLKRKRLYLAEFRSYSIFCLE 113

The following BLAST results are available for this feature:
BLAST of MS020315 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61696.14.5e-2360.00hypothetical protein Csa_006426 [Cucumis sativus][more]
BLAST of MS020315 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS020315 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNW32.2e-2360.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G225350 PE=4 SV=1[more]
BLAST of MS020315 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS020315.1MS020315.1mRNA