MS020279 (gene) Bitter gourd (TR) v1

Overview
NameMS020279
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionHNH domain-containing protein
Locationscaffold665: 691056 .. 691170 (+)
RNA-Seq ExpressionMS020279
SyntenyMS020279
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTCCGACATTTTTCGATACCAAAGCGAAAGACATTTGTTGGGCAAAGGCCGACATTGTCCCGATGGCGTAAGGACGCCGTCGGTAACGTTGTCTGCAAGCGCTTCTGCAGCTGC

mRNA sequence

CGTCCGACATTTTTCGATACCAAAGCGAAAGACATTTGTTGGGCAAAGGCCGACATTGTCCCGTGGCGTAAGGACGCCGTCGGTAACGTTGTCTGCAAGCGCTTCTGCAGCTGC

Coding sequence (CDS)

CGTCCGACATTTTTCGATACCAAAGCGAAAGACATTTGTTGGGCAAAGGCCGACATTGTCCCGTGGCGTAAGGACGCCGTCGGTAACGTTGTCTGCAAGCGCTTCTGCAGCTGC

Protein sequence

RPTFFDTKAKDICWAKADIVPWRKDAVGNVVCKRFCSC
Homology
BLAST of MS020279 vs. NCBI nr
Match: XP_022135260.1 (uncharacterized protein LOC111007267 [Momordica charantia])

HSP 1 Score: 76.6 bits (187), Expect = 5.0e-11
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = 0

Query: 1  RPTFFDTKAKDICWAKADIVP------WRKDAVGNVVCKRFCSC 39
          RP FFDTKAK ICWAKADIVP      WRKDA GNVVCKRFC+C
Sbjct: 28 RPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNC 71

BLAST of MS020279 vs. NCBI nr
Match: KAF7838499.1 (HNH endonuclease domain-containing protein [Senna tora])

HSP 1 Score: 76.3 bits (186), Expect = 6.6e-11
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 0

Query: 1  RPTFFDTKAKDICWAKADIVP------WRKDAVGNVVCKRFCSC 39
          RP FFDTKAK +CWAKADIVP      WRKDA GN+VCKRFC+C
Sbjct: 19 RPRFFDTKAKSLCWAKADIVPGRHPERWRKDAAGNIVCKRFCNC 62

BLAST of MS020279 vs. NCBI nr
Match: XP_023531696.1 (uncharacterized protein LOC111793864 [Cucurbita pepo subsp. pepo] >KAG6587563.1 hypothetical protein SDJN03_16128, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 33/44 (75.00%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 1  RPTFFDTKAKDICWAKADIVP------WRKDAVGNVVCKRFCSC 39
          RP FFDTKAK ICWAKAD VP      WRKDA GNVVCKRFC+C
Sbjct: 39 RPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNC 82

BLAST of MS020279 vs. NCBI nr
Match: XP_022933741.1 (uncharacterized protein LOC111441065 [Cucurbita moschata] >XP_022972986.1 uncharacterized protein LOC111471509 [Cucurbita maxima])

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 33/44 (75.00%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 1  RPTFFDTKAKDICWAKADIVP------WRKDAVGNVVCKRFCSC 39
          RP FFDTKAK ICWAKAD VP      WRKDA GNVVCKRFC+C
Sbjct: 39 RPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNC 82

BLAST of MS020279 vs. NCBI nr
Match: RAL53706.1 (hypothetical protein DM860_015434 [Cuscuta australis] >VFQ77374.1 unnamed protein product [Cuscuta campestris])

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 0

Query: 1  RPTFFDTKAKDICWAKADIVP------WRKDAVGNVVCKRFCSC 39
          RP FFDT AK++CWAKADIVP      WRKDA GN+VCKRFC+C
Sbjct: 16 RPRFFDTMAKNLCWAKADIVPGRHPERWRKDAAGNIVCKRFCNC 59

BLAST of MS020279 vs. ExPASy TrEMBL
Match: A0A6J1C0N7 (uncharacterized protein LOC111007267 OS=Momordica charantia OX=3673 GN=LOC111007267 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-11
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = 0

Query: 1  RPTFFDTKAKDICWAKADIVP------WRKDAVGNVVCKRFCSC 39
          RP FFDTKAK ICWAKADIVP      WRKDA GNVVCKRFC+C
Sbjct: 28 RPRFFDTKAKAICWAKADIVPGRHPDRWRKDAAGNVVCKRFCNC 71

BLAST of MS020279 vs. ExPASy TrEMBL
Match: A0A6J1I7G1 (uncharacterized protein LOC111471509 OS=Cucurbita maxima OX=3661 GN=LOC111471509 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.2e-11
Identity = 33/44 (75.00%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 1  RPTFFDTKAKDICWAKADIVP------WRKDAVGNVVCKRFCSC 39
          RP FFDTKAK ICWAKAD VP      WRKDA GNVVCKRFC+C
Sbjct: 39 RPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNC 82

BLAST of MS020279 vs. ExPASy TrEMBL
Match: A0A6J1EZW3 (uncharacterized protein LOC111441065 OS=Cucurbita moschata OX=3662 GN=LOC111441065 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.2e-11
Identity = 33/44 (75.00%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 1  RPTFFDTKAKDICWAKADIVP------WRKDAVGNVVCKRFCSC 39
          RP FFDTKAK ICWAKAD VP      WRKDA GNVVCKRFC+C
Sbjct: 39 RPRFFDTKAKAICWAKADTVPGRHPERWRKDAAGNVVCKRFCNC 82

BLAST of MS020279 vs. ExPASy TrEMBL
Match: A0A484LM52 (HNHc domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS19150 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 0

Query: 1  RPTFFDTKAKDICWAKADIVP------WRKDAVGNVVCKRFCSC 39
          RP FFDT AK++CWAKADIVP      WRKDA GN+VCKRFC+C
Sbjct: 16 RPRFFDTMAKNLCWAKADIVPGRHPERWRKDAAGNIVCKRFCNC 59

BLAST of MS020279 vs. ExPASy TrEMBL
Match: A0A328E8M2 (HNHc domain-containing protein OS=Cuscuta australis OX=267555 GN=DM860_015434 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 0

Query: 1  RPTFFDTKAKDICWAKADIVP------WRKDAVGNVVCKRFCSC 39
          RP FFDT AK++CWAKADIVP      WRKDA GN+VCKRFC+C
Sbjct: 16 RPRFFDTMAKNLCWAKADIVPGRHPERWRKDAAGNIVCKRFCNC 59

BLAST of MS020279 vs. TAIR 10
Match: AT1G18680.1 (HNH endonuclease domain-containing protein )

HSP 1 Score: 63.9 bits (154), Expect = 3.1e-11
Identity = 28/44 (63.64%), Postives = 31/44 (70.45%), Query Frame = 0

Query: 1  RPTFFDTKAKDICWAKADIVP------WRKDAVGNVVCKRFCSC 39
          RP FFD KAK+ CWA ADIVP      WRKD  GN+VCKRF +C
Sbjct: 39 RPRFFDGKAKNKCWANADIVPGRHPERWRKDVAGNIVCKRFGNC 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022135260.15.0e-1177.27uncharacterized protein LOC111007267 [Momordica charantia][more]
KAF7838499.16.6e-1172.73HNH endonuclease domain-containing protein [Senna tora][more]
XP_023531696.11.9e-1075.00uncharacterized protein LOC111793864 [Cucurbita pepo subsp. pepo] >KAG6587563.1 ... [more]
XP_022933741.11.9e-1075.00uncharacterized protein LOC111441065 [Cucurbita moschata] >XP_022972986.1 unchar... [more]
RAL53706.12.5e-1070.45hypothetical protein DM860_015434 [Cuscuta australis] >VFQ77374.1 unnamed protei... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C0N72.4e-1177.27uncharacterized protein LOC111007267 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A6J1I7G19.2e-1175.00uncharacterized protein LOC111471509 OS=Cucurbita maxima OX=3661 GN=LOC111471509... [more]
A0A6J1EZW39.2e-1175.00uncharacterized protein LOC111441065 OS=Cucurbita moschata OX=3662 GN=LOC1114410... [more]
A0A484LM521.2e-1070.45HNHc domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS1915... [more]
A0A328E8M21.2e-1070.45HNHc domain-containing protein OS=Cuscuta australis OX=267555 GN=DM860_015434 PE... [more]
Match NameE-valueIdentityDescription
AT1G18680.13.1e-1163.64HNH endonuclease domain-containing protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS020279.1MS020279.1mRNA