MS020278 (gene) Bitter gourd (TR) v1

Overview


Name	MS020278
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold665: 688974 .. 689351 (+)
RNA-Seq Expression	MS020278
Synteny	MS020278

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAGGCAAATAGTAGAATTTAGAACACCCCAGCACCCTTCTGTGGGCAAAAACAACTGGGGTGGAGCTTCTCCTTTGCTAGCCAGAAACATACCCCATGAGACTCTAGAACTGAGGTACCTCAACCTCAATTCCTCTCGTACTCGAGACGAAATCTTTCCTCTGCAAGGCGATGACGACGATTCCAGCTACTACTTGCCCGTCTCGTACACACCTCGACTGCAGCGTCTTGAAAAGTCGAAGAATATGAAAAGGAGTTCATTTTTGTCAAAGTTATCCTTGCCCTGGAGAGGGAAGAAAACATTGTTGGGCTCCAACTCAAGGAAGAAATGGTTCACGAGATGGGATTATCAGAACAGGTGGCCTCAGGGCTGGTGC

mRNA sequence

AGGAGGCAAATAGTAGAATTTAGAACACCCCAGCACCCTTCTGTGGGCAAAAACAACTGGGGTGGAGCTTCTCCTTTGCTAGCCAGAAACATACCCCATGAGACTCTAGAACTGAGGTACCTCAACCTCAATTCCTCTCGTACTCGAGACGAAATCTTTCCTCTGCAAGGCGATGACGACGATTCCAGCTACTACTTGCCCGTCTCGTACACACCTCGACTGCAGCGTCTTGAAAAGTCGAAGAATATGAAAAGGAGTTCATTTTTGTCAAAGTTATCCTTGCCCTGGAGAGGGAAGAAAACATTGTTGGGCTCCAACTCAAGGAAGAAATGGTTCACGAGATGGGATTATCAGAACAGGTGGCCTCAGGGCTGGTGC

Coding sequence (CDS)

AGGAGGCAAATAGTAGAATTTAGAACACCCCAGCACCCTTCTGTGGGCAAAAACAACTGGGGTGGAGCTTCTCCTTTGCTAGCCAGAAACATACCCCATGAGACTCTAGAACTGAGGTACCTCAACCTCAATTCCTCTCGTACTCGAGACGAAATCTTTCCTCTGCAAGGCGATGACGACGATTCCAGCTACTACTTGCCCGTCTCGTACACACCTCGACTGCAGCGTCTTGAAAAGTCGAAGAATATGAAAAGGAGTTCATTTTTGTCAAAGTTATCCTTGCCCTGGAGAGGGAAGAAAACATTGTTGGGCTCCAACTCAAGGAAGAAATGGTTCACGAGATGGGATTATCAGAACAGGTGGCCTCAGGGCTGGTGC

Protein sequence

RRQIVEFRTPQHPSVGKNNWGGASPLLARNIPHETLELRYLNLNSSRTRDEIFPLQGDDDDSSYYLPVSYTPRLQRLEKSKNMKRSSFLSKLSLPWRGKKTLLGSNSRKKWFTRWDYQNRWPQGWC

Homology

[Close]

BLAST of MS020278 vs. NCBI nr
Match: TYK20514.1 (hypothetical protein E5676_scaffold237G00890 [Cucumis melo var. makuwa])

HSP 1 Score: 223.8 bits (569), Expect = 8.4e-55
Identity = 104/126 (82.54%), Postives = 116/126 (92.06%), Query Frame = 0


Query: 6   EFRTPQHPSVGKNNWGGASPLLARNIPHETLELRYLNLNSSRTRDEIFPLQGDDDD---- 65
           EFRTPQHPS+GKNNWGGASPLLARNIPHET+ELRYL LN+SRTRDEIFPLQ D+DD    
Sbjct: 99  EFRTPQHPSLGKNNWGGASPLLARNIPHETIELRYLKLNTSRTRDEIFPLQEDEDDDEVS 158

Query: 66  SSYYLPVSYTPRLQRLEKSKNMKRSSFLSKLSLPWRGKK-TLLGSNSRKKWFTRWDYQNR 125
            +YYLPVSYTPRLQRLEK+K +K++SFLSKLSLPW+GK+ TLLGSNSRKKWF +WDYQNR
Sbjct: 159 DNYYLPVSYTPRLQRLEKTKYVKKNSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQNR 218

Query: 126 WPQGWC 127
           WPQGWC
Sbjct: 219 WPQGWC 224

[Close]

BLAST of MS020278 vs. NCBI nr
Match: KAG6571514.1 (hypothetical protein SDJN03_28242, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 217.2 bits (552), Expect = 7.9e-53
Identity = 104/126 (82.54%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 2   RQIVEFRTPQHPSVGKNNWGGASPLLARNIPHETLELRYLNLNSSRTRDEIFPLQGDDDD 61
           R I+EFRTPQHPS+ KNNWGGASPLLARNIPH+TLELRYL LNS+RTRDEIFPL  +DD 
Sbjct: 2   RPILEFRTPQHPSLAKNNWGGASPLLARNIPHDTLELRYLKLNSARTRDEIFPLL-EDDQ 61

Query: 62  SSYYLPVSYTPRLQRLEKSKNMKRSSFLSKLSLPWRGK-KTLLGSNSRKKWFTRWDYQNR 121
            SYYLPVSY PRLQRLEKS+ +K SSFLSKLSLPWRGK KTL G NSRKKWF  WDYQNR
Sbjct: 62  HSYYLPVSYAPRLQRLEKSRYVKGSSFLSKLSLPWRGKRKTLFGLNSRKKWFKGWDYQNR 121

Query: 122 WPQGWC 127
           WPQGWC
Sbjct: 122 WPQGWC 126

[Close]

BLAST of MS020278 vs. NCBI nr
Match: KGN57931.1 (hypothetical protein Csa_009875 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 2.3e-52
Identity = 100/127 (78.74%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 2   RQIVEFRTPQHPSVGKNNWGGASPLLARNIPHETLELRYLNLNSSRTRDEIFPLQGDDDD 61
           R IVEFRTPQHPS GKNNWGGASPLLARNIPHETLELRYL LN++RTRDEIFPLQ D+ D
Sbjct: 2   RHIVEFRTPQHPSFGKNNWGGASPLLARNIPHETLELRYLKLNTTRTRDEIFPLQEDEVD 61

Query: 62  SSYYLPVSYTPRLQR-LEKSKNMKRSSFLSKLSLPWRGKK-TLLGSNSRKKWFTRWDYQN 121
            +YYLP+SYT +LQ+  +K+K ++R+SFLSKLSLPW+GK+ TLLGSNSRKKWF +WDYQN
Sbjct: 62  DNYYLPISYTTQLQQHFKKTKYVERNSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQN 121

Query: 122 RWPQGWC 127
           RWPQGWC
Sbjct: 122 RWPQGWC 128

[Close]

BLAST of MS020278 vs. NCBI nr
Match: TYI75034.1 (hypothetical protein E1A91_D07G246700v1 [Gossypium mustelinum])

HSP 1 Score: 142.5 bits (358), Expect = 2.5e-30
Identity = 69/126 (54.76%), Postives = 87/126 (69.05%), Query Frame = 0


Query: 1   RRQIVEFRTPQHPSVGKNNWGGASPLLARNIPHETLELRYLNLNSSRTRDEIFPLQGDDD 60
           +R+++EFRTPQHPS+G NNWGGASPLLAR+IP E+LE RYL LNS R RDEIFP + D  
Sbjct: 3   QRELLEFRTPQHPSLGTNNWGGASPLLARDIPKESLEQRYLRLNSMRNRDEIFPAKADHF 62

Query: 61  DSSYYLPVSYTPRLQRLEKSKNMKRSSFLSKLSLPWRGKKTLLGSNSRKKWFTRWDYQNR 120
           + +   P       Q    S+  +   FLSKL  PW+   TL  ++SR++WF RWD +NR
Sbjct: 63  NCN--TPTQAAKHGQAPTPSR--RGRGFLSKLMFPWKETATLGANSSRRRWFPRWDPKNR 122

Query: 121 WPQGWC 127
           WPQGWC
Sbjct: 123 WPQGWC 124

[Close]

BLAST of MS020278 vs. NCBI nr
Match: MBA0822438.1 (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 141.7 bits (356), Expect = 4.2e-30
Identity = 69/126 (54.76%), Postives = 86/126 (68.25%), Query Frame = 0


Query: 1   RRQIVEFRTPQHPSVGKNNWGGASPLLARNIPHETLELRYLNLNSSRTRDEIFPLQGDDD 60
           +R+++EFRTPQHPS+G NNWGGASPLLAR+IP E+LE RYL LNS R RDEIFP   D  
Sbjct: 3   QRELLEFRTPQHPSLGTNNWGGASPLLARDIPKESLEQRYLRLNSIRNRDEIFPANADHF 62

Query: 61  DSSYYLPVSYTPRLQRLEKSKNMKRSSFLSKLSLPWRGKKTLLGSNSRKKWFTRWDYQNR 120
           + +   P       Q    S+  +   FLSKL  PW+   TL  ++SR++WF RWD +NR
Sbjct: 63  NCN--TPTQAAKHGQAPTPSR--RGRGFLSKLMFPWKETATLGANSSRRRWFPRWDPKNR 122

Query: 121 WPQGWC 127
           WPQGWC
Sbjct: 123 WPQGWC 124

[Close]

BLAST of MS020278 vs. ExPASy TrEMBL
Match: A0A5D3DAH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00890 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.1e-55
Identity = 104/126 (82.54%), Postives = 116/126 (92.06%), Query Frame = 0


Query: 6   EFRTPQHPSVGKNNWGGASPLLARNIPHETLELRYLNLNSSRTRDEIFPLQGDDDD---- 65
           EFRTPQHPS+GKNNWGGASPLLARNIPHET+ELRYL LN+SRTRDEIFPLQ D+DD    
Sbjct: 99  EFRTPQHPSLGKNNWGGASPLLARNIPHETIELRYLKLNTSRTRDEIFPLQEDEDDDEVS 158

Query: 66  SSYYLPVSYTPRLQRLEKSKNMKRSSFLSKLSLPWRGKK-TLLGSNSRKKWFTRWDYQNR 125
            +YYLPVSYTPRLQRLEK+K +K++SFLSKLSLPW+GK+ TLLGSNSRKKWF +WDYQNR
Sbjct: 159 DNYYLPVSYTPRLQRLEKTKYVKKNSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQNR 218

Query: 126 WPQGWC 127
           WPQGWC
Sbjct: 219 WPQGWC 224

[Close]

BLAST of MS020278 vs. ExPASy TrEMBL
Match: A0A0A0LCZ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G395420 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-52
Identity = 100/127 (78.74%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 2   RQIVEFRTPQHPSVGKNNWGGASPLLARNIPHETLELRYLNLNSSRTRDEIFPLQGDDDD 61
           R IVEFRTPQHPS GKNNWGGASPLLARNIPHETLELRYL LN++RTRDEIFPLQ D+ D
Sbjct: 2   RHIVEFRTPQHPSFGKNNWGGASPLLARNIPHETLELRYLKLNTTRTRDEIFPLQEDEVD 61

Query: 62  SSYYLPVSYTPRLQR-LEKSKNMKRSSFLSKLSLPWRGKK-TLLGSNSRKKWFTRWDYQN 121
            +YYLP+SYT +LQ+  +K+K ++R+SFLSKLSLPW+GK+ TLLGSNSRKKWF +WDYQN
Sbjct: 62  DNYYLPISYTTQLQQHFKKTKYVERNSFLSKLSLPWKGKRETLLGSNSRKKWFKKWDYQN 121

Query: 122 RWPQGWC 127
           RWPQGWC
Sbjct: 122 RWPQGWC 128

[Close]

BLAST of MS020278 vs. ExPASy TrEMBL
Match: A0A5D2UEN6 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D07G246700v1 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.2e-30
Identity = 69/126 (54.76%), Postives = 87/126 (69.05%), Query Frame = 0


Query: 1   RRQIVEFRTPQHPSVGKNNWGGASPLLARNIPHETLELRYLNLNSSRTRDEIFPLQGDDD 60
           +R+++EFRTPQHPS+G NNWGGASPLLAR+IP E+LE RYL LNS R RDEIFP + D  
Sbjct: 3   QRELLEFRTPQHPSLGTNNWGGASPLLARDIPKESLEQRYLRLNSMRNRDEIFPAKADHF 62

Query: 61  DSSYYLPVSYTPRLQRLEKSKNMKRSSFLSKLSLPWRGKKTLLGSNSRKKWFTRWDYQNR 120
           + +   P       Q    S+  +   FLSKL  PW+   TL  ++SR++WF RWD +NR
Sbjct: 63  NCN--TPTQAAKHGQAPTPSR--RGRGFLSKLMFPWKETATLGANSSRRRWFPRWDPKNR 122

Query: 121 WPQGWC 127
           WPQGWC
Sbjct: 123 WPQGWC 124

[Close]

BLAST of MS020278 vs. ExPASy TrEMBL
Match: A0A7J9IKX3 (Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_019241 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30
Identity = 69/126 (54.76%), Postives = 86/126 (68.25%), Query Frame = 0


Query: 1   RRQIVEFRTPQHPSVGKNNWGGASPLLARNIPHETLELRYLNLNSSRTRDEIFPLQGDDD 60
           +R+++EFRTPQHPS+G NNWGGASPLLAR+IP E+LE RYL LNS R RDEIFP   D  
Sbjct: 3   QRELLEFRTPQHPSLGTNNWGGASPLLARDIPKESLEQRYLRLNSIRNRDEIFPANADHF 62

Query: 61  DSSYYLPVSYTPRLQRLEKSKNMKRSSFLSKLSLPWRGKKTLLGSNSRKKWFTRWDYQNR 120
           + +   P       Q    S+  +   FLSKL  PW+   TL  ++SR++WF RWD +NR
Sbjct: 63  NCN--TPTQAAKHGQAPTPSR--RGRGFLSKLMFPWKETATLGANSSRRRWFPRWDPKNR 122

Query: 121 WPQGWC 127
           WPQGWC
Sbjct: 123 WPQGWC 124

[Close]

BLAST of MS020278 vs. ExPASy TrEMBL
Match: A0A0D2PWJ9 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G252000 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 7.7e-30
Identity = 68/126 (53.97%), Postives = 85/126 (67.46%), Query Frame = 0


Query: 1   RRQIVEFRTPQHPSVGKNNWGGASPLLARNIPHETLELRYLNLNSSRTRDEIFPLQGDDD 60
           +R+++EFRTPQHPS+G NNWGG SPLLAR+IP E+LE RYL LNS R RDEIFP   D  
Sbjct: 3   QRELLEFRTPQHPSLGTNNWGGGSPLLARDIPKESLEQRYLRLNSMRNRDEIFPANADHF 62

Query: 61  DSSYYLPVSYTPRLQRLEKSKNMKRSSFLSKLSLPWRGKKTLLGSNSRKKWFTRWDYQNR 120
           + +   P       Q    S+  +   FLSKL  PW+   TL  ++SR++WF RWD +NR
Sbjct: 63  NCN--TPTQAGKHGQAPTPSR--RGRGFLSKLMFPWKETATLGANSSRRRWFPRWDPKNR 122

Query: 121 WPQGWC 127
           WPQGWC
Sbjct: 123 WPQGWC 124

The following BLAST results are available for this feature:

BLAST of MS020278 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK20514.1	8.4e-55	82.54	hypothetical protein E5676_scaffold237G00890 [Cucumis melo var. makuwa]	[more]
KAG6571514.1	7.9e-53	82.54	hypothetical protein SDJN03_28242, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN57931.1	2.3e-52	78.74	hypothetical protein Csa_009875 [Cucumis sativus]	[more]
TYI75034.1	2.5e-30	54.76	hypothetical protein E1A91_D07G246700v1 [Gossypium mustelinum]	[more]
MBA0822438.1	4.2e-30	54.76	hypothetical protein [Gossypium armourianum]	[more]

BLAST of MS020278 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS020278 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DAH9	4.1e-55	82.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LCZ1	1.1e-52	78.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G395420 PE=4 SV=1	[more]
A0A5D2UEN6	1.2e-30	54.76	Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D07G246700v1 P...	[more]
A0A7J9IKX3	2.0e-30	54.76	Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_019241 PE=4 S...	[more]
A0A0D2PWJ9	7.7e-30	53.97	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G252000 PE=4 ...	[more]

BLAST of MS020278 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020278.1	MS020278.1	mRNA