MS020184 (gene) Bitter gourd (TR) v1

Overview
NameMS020184
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNHL domain-containing protein, putative
Locationscaffold735: 186705 .. 186924 (+)
RNA-Seq ExpressionMS020184
SyntenyMS020184
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCTCATCATTCGTCAATTCAATAAGAGTCATCACAATTACCAATCTATGTTCTACTACGATATTTTAAAAGCGTTTTCTCAATTTCGATGAAGGTCCATTGTGCTACAATCCTTTTAGAAAAGACTATATGTGCTGCAATTTTTCCACTCACTTCACTACCATACCAGGTTTCGCAAAATCATCGATGGACTTCGACAATGACAAATCCTCCTTCATG

mRNA sequence

AAGCTCATCATTCGTCAATTCAATAAGAGTCATCACAATTACCAATCTATGTTCTACTACGATATTTTAAAAGCGCTCAATTTCGATGAAGGTCCATTGTGCTACAATCCTTTTAGAAAAGACTATATGTGCTGCAATTTTTCCACTCACTTCACTACCATACCAGGTTTCGCAAAATCATCGATGGACTTCGACAATGACAAATCCTCCTTCATG

Coding sequence (CDS)

AAGCTCATCATTCGTCAATTCAATAAGAGTCATCACAATTACCAATCTATGTTCTACTACGATATTTTAAAAGCGCTCAATTTCGATGAAGGTCCATTGTGCTACAATCCTTTTAGAAAAGACTATATGTGCTGCAATTTTTCCACTCACTTCACTACCATACCAGGTTTCGCAAAATCATCGATGGACTTCGACAATGACAAATCCTCCTTCATG

Protein sequence

KLIIRQFNKSHHNYQSMFYYDILKALNFDEGPLCYNPFRKDYMCCNFSTHFTTIPGFAKSSMDFDNDKSSFM
Homology
[Close]
BLAST of MS020184 vs. NCBI nr
Match: XP_022134303.1 (uncharacterized protein LOC111006597 [Momordica charantia])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 1   KLIIRQFNKSHHNYQSMFYYDILK-ALNFDEGPLCYNPFRKDYMCCNFSTHFTTIPGFAK 60
           K  IRQFNKS  N QS F YD L  +LNFDEGP+  +PF +D+   +FST F  +P  AK
Sbjct: 86  KTFIRQFNKSPRNRQSTFRYDPLSYSLNFDEGPVRDDPFYEDHKRRDFSTRFAAMPSSAK 145

Query: 61  SSMDFDNDKSSFM 73
           SSMD   D  SF+
Sbjct: 146 SSMDLGKDGLSFI 158

[Close]
BLAST of MS020184 vs. NCBI nr
Match: XP_022990588.1 (uncharacterized protein LOC111487422 [Cucurbita maxima])

HSP 1 Score: 68.6 bits (166), Expect = 2.6e-08
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 0 

Query: 1   KLIIRQFNKSHHNYQSMFYYDILK-ALNFDEGPLCYNPFRKDYMCCNFSTHFTTIPGFAK 60
           K  IRQF+K+ H  QS + YD L  ALNFD+GP   +PFR+D+M  +FS  F +IP  AK
Sbjct: 81  KTFIRQFHKNRHR-QSTYRYDPLSYALNFDDGPALDDPFREDFMRRDFSMRFASIPASAK 140

Query: 61  SSMDFDNDKSSFM 73
           SSMD   D  SF+
Sbjct: 141 SSMDLGKDGPSFI 152

[Close]
BLAST of MS020184 vs. NCBI nr
Match: XP_023533538.1 (uncharacterized protein LOC111795380 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.4 bits (163), Expect = 5.8e-08
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 1   KLIIRQFNKSHHNYQSMFYYDILK-ALNFDEGPLCYNPFRKDYMCCNFSTHFTTIPGFAK 60
           K  IRQF+K+ H  QS + YD L  ALNFDEGP   +PF +D+M  +FS  F +IP  AK
Sbjct: 81  KTFIRQFHKNRHR-QSTYRYDPLSYALNFDEGPALDDPFSEDFMRRDFSMRFASIPASAK 140

Query: 61  SSMDFDNDKSSFM 73
           SSMD   D  SF+
Sbjct: 141 SSMDLGKDGPSFI 152

[Close]
BLAST of MS020184 vs. NCBI nr
Match: KAG6602448.1 (hypothetical protein SDJN03_07681, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033131.1 hypothetical protein SDJN02_07184, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.4 bits (163), Expect = 5.8e-08
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 1   KLIIRQFNKSHHNYQSMFYYDILK-ALNFDEGPLCYNPFRKDYMCCNFSTHFTTIPGFAK 60
           K  IRQF+K+ H  QS + YD L  ALNFDEGP   +PF +D+M  +FS  F +IP  AK
Sbjct: 81  KTFIRQFHKNRHR-QSTYRYDPLSYALNFDEGPALDDPFSEDFMRRDFSMRFASIPASAK 140

Query: 61  SSMDFDNDKSSFM 73
           SSMD   D  SF+
Sbjct: 141 SSMDLGKDGPSFI 152

[Close]
BLAST of MS020184 vs. NCBI nr
Match: XP_022961939.1 (uncharacterized protein LOC111462557 [Cucurbita moschata])

HSP 1 Score: 67.4 bits (163), Expect = 5.8e-08
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 1   KLIIRQFNKSHHNYQSMFYYDILK-ALNFDEGPLCYNPFRKDYMCCNFSTHFTTIPGFAK 60
           K  IRQF+K+ H  QS + YD L  ALNFDEGP   +PF +D+M  +FS  F +IP  AK
Sbjct: 81  KTFIRQFHKNRHR-QSTYRYDPLSYALNFDEGPALDDPFSEDFMRRDFSMRFASIPASAK 140

Query: 61  SSMDFDNDKSSFM 73
           SSMD   D  SF+
Sbjct: 141 SSMDLGKDGPSFI 152

[Close]
BLAST of MS020184 vs. ExPASy TrEMBL
Match: A0A6J1C1N0 (uncharacterized protein LOC111006597 OS=Momordica charantia OX=3673 GN=LOC111006597 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.6e-09
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 1   KLIIRQFNKSHHNYQSMFYYDILK-ALNFDEGPLCYNPFRKDYMCCNFSTHFTTIPGFAK 60
           K  IRQFNKS  N QS F YD L  +LNFDEGP+  +PF +D+   +FST F  +P  AK
Sbjct: 86  KTFIRQFNKSPRNRQSTFRYDPLSYSLNFDEGPVRDDPFYEDHKRRDFSTRFAAMPSSAK 145

Query: 61  SSMDFDNDKSSFM 73
           SSMD   D  SF+
Sbjct: 146 SSMDLGKDGLSFI 158

[Close]
BLAST of MS020184 vs. ExPASy TrEMBL
Match: A0A6J1JTQ3 (uncharacterized protein LOC111487422 OS=Cucurbita maxima OX=3661 GN=LOC111487422 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 0 

Query: 1   KLIIRQFNKSHHNYQSMFYYDILK-ALNFDEGPLCYNPFRKDYMCCNFSTHFTTIPGFAK 60
           K  IRQF+K+ H  QS + YD L  ALNFD+GP   +PFR+D+M  +FS  F +IP  AK
Sbjct: 81  KTFIRQFHKNRHR-QSTYRYDPLSYALNFDDGPALDDPFREDFMRRDFSMRFASIPASAK 140

Query: 61  SSMDFDNDKSSFM 73
           SSMD   D  SF+
Sbjct: 141 SSMDLGKDGPSFI 152

[Close]
BLAST of MS020184 vs. ExPASy TrEMBL
Match: A0A6J1HFG4 (uncharacterized protein LOC111462557 OS=Cucurbita moschata OX=3662 GN=LOC111462557 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.8e-08
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 1   KLIIRQFNKSHHNYQSMFYYDILK-ALNFDEGPLCYNPFRKDYMCCNFSTHFTTIPGFAK 60
           K  IRQF+K+ H  QS + YD L  ALNFDEGP   +PF +D+M  +FS  F +IP  AK
Sbjct: 81  KTFIRQFHKNRHR-QSTYRYDPLSYALNFDEGPALDDPFSEDFMRRDFSMRFASIPASAK 140

Query: 61  SSMDFDNDKSSFM 73
           SSMD   D  SF+
Sbjct: 141 SSMDLGKDGPSFI 152

[Close]
BLAST of MS020184 vs. ExPASy TrEMBL
Match: A0A0A0KRY7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630870 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 38/73 (52.05%), Postives = 46/73 (63.01%), Query Frame = 0 

Query: 1   KLIIRQFNKSHHNYQSMFYYDILK-ALNFDEGPLCYNPFRKDYMCCNFSTHFTTIPGFAK 60
           K  IRQF+K + N QS F YD L  +LNFDEGP   +PF  D++  +FST F  IP  AK
Sbjct: 81  KTFIRQFHK-NRNRQSTFRYDPLSYSLNFDEGPAHDDPFTDDFVRRDFSTRFAAIPASAK 140

Query: 61  SSMDFDNDKSSFM 73
           SSMD   D  SF+
Sbjct: 141 SSMDLGKDSPSFI 152

[Close]
BLAST of MS020184 vs. ExPASy TrEMBL
Match: A0A1S4E267 (uncharacterized protein LOC107991628 OS=Cucumis melo OX=3656 GN=LOC107991628 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.6e-06
Identity = 36/73 (49.32%), Postives = 44/73 (60.27%), Query Frame = 0 

Query: 1   KLIIRQFNKSHHNYQSMFYYDILK-ALNFDEGPLCYNPFRKDYMCCNFSTHFTTIPGFAK 60
           K  IRQF+K + N QS F YD L  +LNFDEGP   + F  D++  +FST F  IP  AK
Sbjct: 80  KTFIRQFHK-NRNRQSTFRYDPLSYSLNFDEGPAHEDSFTDDFVRRDFSTRFAAIPASAK 139

Query: 61  SSMDFDNDKSSFM 73
           SSMD   D  S +
Sbjct: 140 SSMDLVKDSPSLI 151

The following BLAST results are available for this feature:
BLAST of MS020184 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022134303.11.2e-0853.42uncharacterized protein LOC111006597 [Momordica charantia][more]
XP_022990588.12.6e-0852.05uncharacterized protein LOC111487422 [Cucurbita maxima][more]
XP_023533538.15.8e-0852.05uncharacterized protein LOC111795380 [Cucurbita pepo subsp. pepo][more]
KAG6602448.15.8e-0852.05hypothetical protein SDJN03_07681, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022961939.15.8e-0852.05uncharacterized protein LOC111462557 [Cucurbita moschata][more]
BLAST of MS020184 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS020184 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C1N05.6e-0953.42uncharacterized protein LOC111006597 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
A0A6J1JTQ31.3e-0852.05uncharacterized protein LOC111487422 OS=Cucurbita maxima OX=3661 GN=LOC111487422... [more]
A0A6J1HFG42.8e-0852.05uncharacterized protein LOC111462557 OS=Cucurbita moschata OX=3662 GN=LOC1114625... [more]
A0A0A0KRY71.4e-0752.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630870 PE=4 SV=1[more]
A0A1S4E2677.6e-0649.32uncharacterized protein LOC107991628 OS=Cucumis melo OX=3656 GN=LOC107991628 PE=... [more]
BLAST of MS020184 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS020184.1MS020184.1mRNA