MS020114 (gene) Bitter gourd (TR) v1

Overview


Name	MS020114
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Glutaredoxin domain-containing protein
Location	scaffold22: 1797149 .. 1797321 (+)
RNA-Seq Expression	MS020114
Synteny	MS020114

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTCAGTAATTCTCTACACAACAACTCTCAAAGGAACCAGGAAAACTTTTGAGGATTGTAACAGCATAAAATTTCTATTAGAAACTTTCAGAGTGAAATTCTAAGAGCTATGGATTCAAAGGCATTACCTCCGAAGCTCTTCATCAGAGGAAGGTACATTGGCGGAGCAGAG

mRNA sequence

GATTCAGTAATTCTCTACACAACAACTCTCAAAGGAACCAGGAAAACTTTTGAGGATTGTAACAGCATAAAATTTCTATTAGAAACTTTCAGAGAAATTCTAAGAGCTATGGATTCAAAGGCATTACCTCCGAAGCTCTTCATCAGAGGAAGGTACATTGGCGGAGCAGAG

Coding sequence (CDS)

GATTCAGTAATTCTCTACACAACAACTCTCAAAGGAACCAGGAAAACTTTTGAGGATTGTAACAGCATAAAATTTCTATTAGAAACTTTCAGAGAAATTCTAAGAGCTATGGATTCAAAGGCATTACCTCCGAAGCTCTTCATCAGAGGAAGGTACATTGGCGGAGCAGAG

Protein sequence

DSVILYTTTLKGTRKTFEDCNSIKFLLETFREILRAMDSKALPPKLFIRGRYIGGAE

Homology

[Close]

BLAST of MS020114 vs. NCBI nr
Match: XP_022134252.1 (uncharacterized protein At3g28850-like [Momordica charantia])

HSP 1 Score: 94.0 bits (232), Expect = 4.6e-16
Identity = 49/73 (67.12%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 1   DSVILYTTTLKGTRKTFEDCNSIKFLLETFR----------------EILRAMDSKALPP 58
           DSVILYTTTL+G RKTFE+CNSI+FLLETFR                E+ R +DSKALPP
Sbjct: 189 DSVILYTTTLRGIRKTFENCNSIRFLLETFRVKFYERDISMHKEFKEELWRVLDSKALPP 248

[Close]

BLAST of MS020114 vs. NCBI nr
Match: XP_021625598.1 (uncharacterized protein At3g28850-like [Manihot esculenta] >OAY39062.1 hypothetical protein MANES_10G064400v8 [Manihot esculenta])

HSP 1 Score: 88.6 bits (218), Expect = 1.9e-14
Identity = 45/73 (61.64%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 1   DSVILYTTTLKGTRKTFEDCNSIKFLLETFR----------------EILRAMDSKALPP 58
           DSVILYTTTL+G RKTFEDCNS++FLLE+FR                E+ R M+ KA PP
Sbjct: 224 DSVILYTTTLRGIRKTFEDCNSVRFLLESFRVIFYERDVSMHMEFKEELWRVMEGKAKPP 283

[Close]

BLAST of MS020114 vs. NCBI nr
Match: XP_012084880.1 (uncharacterized protein LOC105644215 [Jatropha curcas] >KDP27126.1 hypothetical protein JCGZ_22035 [Jatropha curcas])

HSP 1 Score: 88.2 bits (217), Expect = 2.5e-14
Identity = 44/73 (60.27%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 1   DSVILYTTTLKGTRKTFEDCNSIKFLLETFR----------------EILRAMDSKALPP 58
           DSVILYTTTLKG RKTFEDCNS++FLLE+FR                E+   M+ KA+PP
Sbjct: 219 DSVILYTTTLKGIRKTFEDCNSVRFLLESFRVIFYERDVSMHMEFKEELWNVMEGKAMPP 278

[Close]

BLAST of MS020114 vs. NCBI nr
Match: XP_030966127.1 (uncharacterized protein At3g28850-like [Quercus lobata])

HSP 1 Score: 87.0 bits (214), Expect = 5.6e-14
Identity = 45/73 (61.64%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 1   DSVILYTTTLKGTRKTFEDCNSIKFLLETFR----------------EILRAMDSKALPP 58
           DSVI YTTTL G RKTFEDCNSI+FLLE+FR                E+ R +DSKA PP
Sbjct: 238 DSVIFYTTTLHGIRKTFEDCNSIRFLLESFRVVFYEKDVSMHMEFKEELWRILDSKAAPP 297

[Close]

BLAST of MS020114 vs. NCBI nr
Match: XP_023871109.1 (uncharacterized protein At3g28850 [Quercus suber])

HSP 1 Score: 87.0 bits (214), Expect = 5.6e-14
Identity = 45/73 (61.64%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 1   DSVILYTTTLKGTRKTFEDCNSIKFLLETFR----------------EILRAMDSKALPP 58
           DSVI YTTTL G RKTFEDCNSI+FLLE+FR                E+ R +DSKA PP
Sbjct: 240 DSVIFYTTTLHGIRKTFEDCNSIRFLLESFRVVFYEKDVSMHMEFKEELWRILDSKAAPP 299

[Close]

BLAST of MS020114 vs. ExPASy TrEMBL
Match: A0A6J1BZ48 (uncharacterized protein At3g28850-like OS=Momordica charantia OX=3673 GN=LOC111006554 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.2e-16
Identity = 49/73 (67.12%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 1   DSVILYTTTLKGTRKTFEDCNSIKFLLETFR----------------EILRAMDSKALPP 58
           DSVILYTTTL+G RKTFE+CNSI+FLLETFR                E+ R +DSKALPP
Sbjct: 189 DSVILYTTTLRGIRKTFENCNSIRFLLETFRVKFYERDISMHKEFKEELWRVLDSKALPP 248

[Close]

BLAST of MS020114 vs. ExPASy TrEMBL
Match: A0A2C9V5E3 (Glutaredoxin domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_10G064400 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.3e-15
Identity = 45/73 (61.64%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 1   DSVILYTTTLKGTRKTFEDCNSIKFLLETFR----------------EILRAMDSKALPP 58
           DSVILYTTTL+G RKTFEDCNS++FLLE+FR                E+ R M+ KA PP
Sbjct: 224 DSVILYTTTLRGIRKTFEDCNSVRFLLESFRVIFYERDVSMHMEFKEELWRVMEGKAKPP 283

[Close]

BLAST of MS020114 vs. ExPASy TrEMBL
Match: A0A067JT39 (Glutaredoxin domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_22035 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 44/73 (60.27%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 1   DSVILYTTTLKGTRKTFEDCNSIKFLLETFR----------------EILRAMDSKALPP 58
           DSVILYTTTLKG RKTFEDCNS++FLLE+FR                E+   M+ KA+PP
Sbjct: 219 DSVILYTTTLKGIRKTFEDCNSVRFLLESFRVIFYERDVSMHMEFKEELWNVMEGKAMPP 278

[Close]

BLAST of MS020114 vs. ExPASy TrEMBL
Match: A0A2N9GZG2 (Glutaredoxin domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32651 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 45/73 (61.64%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 1   DSVILYTTTLKGTRKTFEDCNSIKFLLETFR----------------EILRAMDSKALPP 58
           DSVI YTTTL+G RKTFEDCNSI+FLLE+FR                E+ R +DSKA PP
Sbjct: 231 DSVIFYTTTLRGIRKTFEDCNSIRFLLESFRVVFYERDVSMHTEFKEELWRILDSKAAPP 290

[Close]

BLAST of MS020114 vs. ExPASy TrEMBL
Match: A0A7N2LFS5 (Glutaredoxin domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.7e-14
Identity = 45/73 (61.64%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 1   DSVILYTTTLKGTRKTFEDCNSIKFLLETFR----------------EILRAMDSKALPP 58
           DSVI YTTTL G RKTFEDCNSI+FLLE+FR                E+ R +DSKA PP
Sbjct: 238 DSVIFYTTTLHGIRKTFEDCNSIRFLLESFRVVFYEKDVSMHMEFKEELWRILDSKAAPP 297

[Close]

BLAST of MS020114 vs. TAIR 10
Match: AT5G01420.1 (Glutaredoxin family protein )

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-12
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 1   DSVILYTTTLKGTRKTFEDCNSIKFLLETF---------------REILR---AMDSKAL 58
           +SV+ YTTTL+G RKTF+DCN I+FLL++F               RE LR   A +++ L
Sbjct: 256 ESVVFYTTTLRGIRKTFDDCNMIRFLLDSFKVKYYERDVSMHREYREELRRISAAETEVL 315

[Close]

BLAST of MS020114 vs. TAIR 10
Match: AT5G06470.1 (Glutaredoxin family protein )

HSP 1 Score: 62.8 bits (151), Expect = 1.0e-10
Identity = 35/73 (47.95%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 1   DSVILYTTTLKGTRKTFEDCNSIKFLLET---------------FR-EILRAMDSKALPP 58
           DSV+ YTT L+  RKTFE C  ++FLLE                FR E+ R +  K   P
Sbjct: 89  DSVVFYTTGLRSVRKTFEACRRVRFLLENHQVMYRERDVSMDSEFREEMWRLLGGKVTSP 148

[Close]

BLAST of MS020114 vs. TAIR 10
Match: AT1G32760.1 (Glutaredoxin family protein )

HSP 1 Score: 58.2 bits (139), Expect = 2.6e-09
Identity = 30/75 (40.00%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 3   VILYTTTLKGTRKTFEDCNSIKFLLETF------REI------------LRAMDSKA--L 58
           V++YTT+L+G R+TFE CN+++  +E+F      R++            L A++S A  L
Sbjct: 163 VVIYTTSLRGVRRTFEACNAVRAAIESFGVVVCERDVSMDRGFREELSNLMAVESTAAVL 222

[Close]

BLAST of MS020114 vs. TAIR 10
Match: AT4G10630.1 (Glutaredoxin family protein )

HSP 1 Score: 56.6 bits (135), Expect = 7.5e-09
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 3   VILYTTTLKGTRKTFEDCNSIKFLLET---------------FREILRAMDSK------- 58
           V++YTT+L+G R+TFE CN+++  +E+               FRE L ++ +K       
Sbjct: 178 VVMYTTSLRGVRQTFEACNAVRAAVESFGVVVCERDVSMDRRFREELVSLMAKRVGDEGV 237

[Close]

BLAST of MS020114 vs. TAIR 10
Match: AT3G11773.1 (Thioredoxin superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 9.8e-09
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 6  YTTTLKGTRKTFEDCNSIKFLLE----TFR------------EILRAMDSKALPPKLFIR 58
          +TT+L+G RKTFEDC  ++FLLE    +FR            E+ R +  +  PP+LFI+
Sbjct: 12 FTTSLRGVRKTFEDCRRVRFLLENHKASFRERDVSMDCEYKEEMWRLLGEQVTPPRLFIK 71

The following BLAST results are available for this feature:

BLAST of MS020114 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134252.1	4.6e-16	67.12	uncharacterized protein At3g28850-like [Momordica charantia]	[more]
XP_021625598.1	1.9e-14	61.64	uncharacterized protein At3g28850-like [Manihot esculenta] >OAY39062.1 hypotheti...	[more]
XP_012084880.1	2.5e-14	60.27	uncharacterized protein LOC105644215 [Jatropha curcas] >KDP27126.1 hypothetical ...	[more]
XP_030966127.1	5.6e-14	61.64	uncharacterized protein At3g28850-like [Quercus lobata]	[more]
XP_023871109.1	5.6e-14	61.64	uncharacterized protein At3g28850 [Quercus suber]	[more]

BLAST of MS020114 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS020114 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZ48	2.2e-16	67.12	uncharacterized protein At3g28850-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A2C9V5E3	9.3e-15	61.64	Glutaredoxin domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_10G...	[more]
A0A067JT39	1.2e-14	60.27	Glutaredoxin domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_2203...	[more]
A0A2N9GZG2	1.2e-14	61.64	Glutaredoxin domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3...	[more]
A0A7N2LFS5	2.7e-14	61.64	Glutaredoxin domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of MS020114 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01420.1	3.3e-12	48.00	Glutaredoxin family protein	[more]
AT5G06470.1	1.0e-10	47.95	Glutaredoxin family protein	[more]
AT1G32760.1	2.6e-09	40.00	Glutaredoxin family protein	[more]
AT4G10630.1	7.5e-09	38.46	Glutaredoxin family protein	[more]
AT3G11773.1	9.8e-09	42.65	Thioredoxin superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR45669	GLUTAREDOXIN DOMAIN-CONTAINING CYSTEINE-RICH PROTEIN CG12206-RELATED	coord: 1..57
None	No IPR available	PANTHER	PTHR45669:SF28	GLUTAREDOXIN FAMILY PROTEIN	coord: 1..57
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 2..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020114.1	MS020114.1	mRNA