MS020113 (gene) Bitter gourd (TR) v1

Overview


Name	MS020113
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Location	scaffold22: 1794966 .. 1795160 (-)
RNA-Seq Expression	MS020113
Synteny	MS020113

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCCAGTGTCTACATCCACGCCGATTCCTCTGTCGAATTCAATCCTTCCGGCGGTGTTTTCGAAGGCCGATTCATTCCGGCGGGGAAGACCATCTCCGACTACGCGCGTGCCGTCATCGACGATTCTCTGAACCTCTGCTTTGCCCTCGTCTCTCAACGCTGTATCCCTATCCAATCCTTCGATTTCATCTTC

mRNA sequence

CTCTCCAGTGTCTACATCCACGCCGATTCCTCTGTCGAATTCAATCCTTCCGGCGGTGTTTTCGAAGGCCGATTCATTCCGGCGGGGAAGACCATCTCCGACTACGCGCGTGCCGTCATCGACGATTCTCTGAACCTCTGCTTTGCCCTCGTCTCTCAACGCTGTATCCCTATCCAATCCTTCGATTTCATCTTC

Coding sequence (CDS)

CTCTCCAGTGTCTACATCCACGCCGATTCCTCTGTCGAATTCAATCCTTCCGGCGGTGTTTTCGAAGGCCGATTCATTCCGGCGGGGAAGACCATCTCCGACTACGCGCGTGCCGTCATCGACGATTCTCTGAACCTCTGCTTTGCCCTCGTCTCTCAACGCTGTATCCCTATCCAATCCTTCGATTTCATCTTC

Protein sequence

LSSVYIHADSSVEFNPSGGVFEGRFIPAGKTISDYARAVIDDSLNLCFALVSQRCIPIQSFDFIF

Homology

[Close]

BLAST of MS020113 vs. NCBI nr
Match: XP_022133542.1 (uncharacterized protein LOC111006101 [Momordica charantia])

HSP 1 Score: 95.1 bits (235), Expect = 2.3e-16
Identity = 52/76 (68.42%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1   LSSVYIHADSSVEFNPSGGVFEGRFIPAGKTISD-----------YARAVIDDSLNLCFA 60
           L ++YIHAD SVE NP GGVFEGRFI AGKT               ARAVIDD LNL FA
Sbjct: 106 LFNIYIHADPSVEINPPGGVFEGRFIRAGKTARASPTLISAARRLLARAVIDDPLNLYFA 165

Query: 61  LVSQRCIPIQSFDFIF 66
           LVSQRCIPIQSFDFIF
Sbjct: 166 LVSQRCIPIQSFDFIF 181

[Close]

BLAST of MS020113 vs. NCBI nr
Match: XP_038886472.1 (glycosyltransferase BC10 [Benincasa hispida] >XP_038886473.1 glycosyltransferase BC10 [Benincasa hispida] >XP_038886474.1 glycosyltransferase BC10 [Benincasa hispida])

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 47/74 (63.51%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 3   SVYIHADSSVEFNPSGGVFEGRFIPAGKT-------ISD----YARAVIDDSLNLCFALV 62
           ++YIHAD +VE NP GGVF+GRFIPA KT       IS      ARAVIDD LNL FALV
Sbjct: 105 NIYIHADPTVELNPPGGVFDGRFIPARKTQRASPTLISAARRLLARAVIDDPLNLYFALV 164

Query: 63  SQRCIPIQSFDFIF 66
           SQ CIPI SFDF++
Sbjct: 165 SQHCIPIHSFDFMY 178

[Close]

BLAST of MS020113 vs. NCBI nr
Match: XP_004140994.2 (glycosyltransferase BC10 [Cucumis sativus] >KGN46055.1 hypothetical protein Csa_005159 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 7.0e-13
Identity = 42/74 (56.76%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 3   SVYIHADSSVEFNPSGGVFEGRFIPAGKTISD-----------YARAVIDDSLNLCFALV 62
           ++YIHAD +V+  P GGVF+GRF+PA KT+              ARAVIDD LNL FALV
Sbjct: 104 NIYIHADPTVQLTPPGGVFDGRFVPARKTLRASPTLISAARRLLARAVIDDPLNLYFALV 163

Query: 63  SQRCIPIQSFDFIF 66
           SQ CIPI SFDF++
Sbjct: 164 SQHCIPIHSFDFMY 177

[Close]

BLAST of MS020113 vs. NCBI nr
Match: KAG7032923.1 (hypothetical protein SDJN02_06974, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-12
Identity = 44/74 (59.46%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 3   SVYIHADSSVEFNPSGGVFEGRFIPAGKTISD-----------YARAVIDDSLNLCFALV 62
           ++YIHAD SVE N  GGVF+GRFIPA +T               A AVIDD LNL FALV
Sbjct: 110 NIYIHADPSVELNQPGGVFDGRFIPARRTERASPTLITAARRLLAHAVIDDPLNLYFALV 169

Query: 63  SQRCIPIQSFDFIF 66
           SQRCIPI SFDF++
Sbjct: 170 SQRCIPIHSFDFMY 183

[Close]

BLAST of MS020113 vs. NCBI nr
Match: XP_008456621.1 (PREDICTED: uncharacterized protein LOC103496524 [Cucumis melo] >XP_008456622.1 PREDICTED: uncharacterized protein LOC103496524 [Cucumis melo] >KAA0031731.1 uncharacterized protein E6C27_scaffold139G005200 [Cucumis melo var. makuwa] >TYK11782.1 uncharacterized protein E5676_scaffold304G001110 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-12
Identity = 42/74 (56.76%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 3   SVYIHADSSVEFNPSGGVFEGRFIPAGKTISD-----------YARAVIDDSLNLCFALV 62
           ++YIHAD +V+  P GGVF+GRF+PA KT               ARAVIDD LNL FALV
Sbjct: 103 NIYIHADPTVQLTPPGGVFDGRFVPARKTYRASPTLISAARRLLARAVIDDPLNLYFALV 162

Query: 63  SQRCIPIQSFDFIF 66
           SQ CIPI SFDF++
Sbjct: 163 SQHCIPIHSFDFMY 176

[Close]

BLAST of MS020113 vs. ExPASy TrEMBL
Match: A0A6J1BWZ7 (uncharacterized protein LOC111006101 OS=Momordica charantia OX=3673 GN=LOC111006101 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 52/76 (68.42%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1   LSSVYIHADSSVEFNPSGGVFEGRFIPAGKTISD-----------YARAVIDDSLNLCFA 60
           L ++YIHAD SVE NP GGVFEGRFI AGKT               ARAVIDD LNL FA
Sbjct: 106 LFNIYIHADPSVEINPPGGVFEGRFIRAGKTARASPTLISAARRLLARAVIDDPLNLYFA 165

Query: 61  LVSQRCIPIQSFDFIF 66
           LVSQRCIPIQSFDFIF
Sbjct: 166 LVSQRCIPIQSFDFIF 181

[Close]

BLAST of MS020113 vs. ExPASy TrEMBL
Match: A0A0A0K8K2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046330 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.4e-13
Identity = 42/74 (56.76%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 3   SVYIHADSSVEFNPSGGVFEGRFIPAGKTISD-----------YARAVIDDSLNLCFALV 62
           ++YIHAD +V+  P GGVF+GRF+PA KT+              ARAVIDD LNL FALV
Sbjct: 104 NIYIHADPTVQLTPPGGVFDGRFVPARKTLRASPTLISAARRLLARAVIDDPLNLYFALV 163

Query: 63  SQRCIPIQSFDFIF 66
           SQ CIPI SFDF++
Sbjct: 164 SQHCIPIHSFDFMY 177

[Close]

BLAST of MS020113 vs. ExPASy TrEMBL
Match: A0A6J1JT55 (uncharacterized protein LOC111487264 OS=Cucurbita maxima OX=3661 GN=LOC111487264 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.6e-13
Identity = 44/74 (59.46%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 3   SVYIHADSSVEFNPSGGVFEGRFIPAGKTISD-----------YARAVIDDSLNLCFALV 62
           ++YIHAD SVE N  GGVF+GRFIPA +T               A AVIDD LNL FALV
Sbjct: 106 NIYIHADPSVELNQPGGVFDGRFIPARRTERASPTLITAARRLLAHAVIDDPLNLYFALV 165

Query: 63  SQRCIPIQSFDFIF 66
           SQRCIPI SFDF++
Sbjct: 166 SQRCIPIHSFDFMY 179

[Close]

BLAST of MS020113 vs. ExPASy TrEMBL
Match: A0A1S3C397 (uncharacterized protein LOC103496524 OS=Cucumis melo OX=3656 GN=LOC103496524 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.6e-13
Identity = 42/74 (56.76%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 3   SVYIHADSSVEFNPSGGVFEGRFIPAGKTISD-----------YARAVIDDSLNLCFALV 62
           ++YIHAD +V+  P GGVF+GRF+PA KT               ARAVIDD LNL FALV
Sbjct: 103 NIYIHADPTVQLTPPGGVFDGRFVPARKTYRASPTLISAARRLLARAVIDDPLNLYFALV 162

Query: 63  SQRCIPIQSFDFIF 66
           SQ CIPI SFDF++
Sbjct: 163 SQHCIPIHSFDFMY 176

[Close]

BLAST of MS020113 vs. ExPASy TrEMBL
Match: A0A6J1HBZ3 (uncharacterized protein LOC111461937 OS=Cucurbita moschata OX=3662 GN=LOC111461937 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.6e-13
Identity = 44/74 (59.46%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 3   SVYIHADSSVEFNPSGGVFEGRFIPAGKTISD-----------YARAVIDDSLNLCFALV 62
           ++YIHAD SVE N  GGVF+GRFIPA +T               A AVIDD LNL FALV
Sbjct: 110 NIYIHADPSVELNQPGGVFDGRFIPARRTERASPTLITAARRLLAHAVIDDPLNLYFALV 169

Query: 63  SQRCIPIQSFDFIF 66
           SQRCIPI SFDF++
Sbjct: 170 SQRCIPIHSFDFMY 183

[Close]

BLAST of MS020113 vs. TAIR 10
Match: AT4G32290.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein )

HSP 1 Score: 52.4 bits (124), Expect = 1.6e-07
Identity = 29/77 (37.66%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 1   LSSVYIHADSSVEFNPS-GGVFEGRFIPAGKTISD-----------YARAVIDDSLNLCF 60
           L +VY+HAD + E++P   GVF  R I +  ++              A A++DD LN  F
Sbjct: 121 LYNVYVHADPTREYDPPFSGVFLNRVIHSKPSLRHTPTLTAAARRLLAHALLDDPLNYMF 180

Query: 61  ALVSQRCIPIQSFDFIF 66
           A++S  C+PI+SFDF +
Sbjct: 181 AVISPSCVPIRSFDFTY 197

[Close]

BLAST of MS020113 vs. TAIR 10
Match: AT3G52060.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein )

HSP 1 Score: 51.6 bits (122), Expect = 2.8e-07
Identity = 30/77 (38.96%), Postives = 40/77 (51.95%), Query Frame = 0


Query: 1   LSSVYIHADSSVEFNP--SGGVFEGRFIPAGKTISD-----------YARAVIDDSLNLC 60
           L +VYIHAD +   +P         +FIPA +T               A A++DD  NL 
Sbjct: 102 LYNVYIHADPTSSVSPLLDSSSINAKFIPARRTARASPTLISAERRLLANAILDDPNNLY 161

Query: 61  FALVSQRCIPIQSFDFI 65
           FAL+SQ CIP+ SF +I
Sbjct: 162 FALISQHCIPLHSFSYI 178

[Close]

BLAST of MS020113 vs. TAIR 10
Match: AT3G52060.2 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein )

HSP 1 Score: 51.6 bits (122), Expect = 2.8e-07
Identity = 30/77 (38.96%), Postives = 40/77 (51.95%), Query Frame = 0


Query: 1   LSSVYIHADSSVEFNP--SGGVFEGRFIPAGKTISD-----------YARAVIDDSLNLC 60
           L +VYIHAD +   +P         +FIPA +T               A A++DD  NL 
Sbjct: 102 LYNVYIHADPTSSVSPLLDSSSINAKFIPARRTARASPTLISAERRLLANAILDDPNNLY 161

Query: 61  FALVSQRCIPIQSFDFI 65
           FAL+SQ CIP+ SF +I
Sbjct: 162 FALISQHCIPLHSFSYI 178

[Close]

BLAST of MS020113 vs. TAIR 10
Match: AT5G25330.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein )

HSP 1 Score: 46.6 bits (109), Expect = 8.9e-06
Identity = 28/78 (35.90%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 1   LSSVYIHADSSVEFNP-SGGVFEGRFIPAGK-------TISDYAR-----AVIDDSLNLC 60
           L +VY+H D + +  P S G F+ R IP+ K       T+   AR     A+++D  N  
Sbjct: 111 LYNVYVHVDPTQKHKPGSHGTFQNRIIPSSKPAYRHTPTLISAARRLLAHALLEDPSNYM 170

Query: 61  FALVSQRCIPIQSFDFIF 66
           F L+S  CIP+ SF+F +
Sbjct: 171 FILLSPSCIPLHSFNFTY 188

[Close]

BLAST of MS020113 vs. TAIR 10
Match: AT5G22070.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.2e-05
Identity = 29/79 (36.71%), Postives = 40/79 (50.63%), Query Frame = 0


Query: 1   LSSVYIHADSSVEFN--PSGGVFEGRFIPAGK------------TISDYARAVIDDSLNL 60
           L +VY+HAD  V      +G VFE  FI   K            T    A A +DD  N 
Sbjct: 99  LYNVYVHADPFVNVTRPGNGSVFENAFIANAKRTARASPTLISATRRLLATAFLDDPANT 158

Query: 61  CFALVSQRCIPIQSFDFIF 66
            FA++SQ CIP+ SF++++
Sbjct: 159 YFAVLSQYCIPLHSFNYVY 177

The following BLAST results are available for this feature:

BLAST of MS020113 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133542.1	2.3e-16	68.42	uncharacterized protein LOC111006101 [Momordica charantia]	[more]
XP_038886472.1	1.4e-13	63.51	glycosyltransferase BC10 [Benincasa hispida] >XP_038886473.1 glycosyltransferase...	[more]
XP_004140994.2	7.0e-13	56.76	glycosyltransferase BC10 [Cucumis sativus] >KGN46055.1 hypothetical protein Csa_...	[more]
KAG7032923.1	1.6e-12	59.46	hypothetical protein SDJN02_06974, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_008456621.1	1.6e-12	56.76	PREDICTED: uncharacterized protein LOC103496524 [Cucumis melo] >XP_008456622.1 P...	[more]

BLAST of MS020113 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS020113 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BWZ7	1.1e-16	68.42	uncharacterized protein LOC111006101 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A0A0K8K2	3.4e-13	56.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046330 PE=4 SV=1	[more]
A0A6J1JT55	7.6e-13	59.46	uncharacterized protein LOC111487264 OS=Cucurbita maxima OX=3661 GN=LOC111487264...	[more]
A0A1S3C397	7.6e-13	56.76	uncharacterized protein LOC103496524 OS=Cucumis melo OX=3656 GN=LOC103496524 PE=...	[more]
A0A6J1HBZ3	7.6e-13	59.46	uncharacterized protein LOC111461937 OS=Cucurbita moschata OX=3662 GN=LOC1114619...	[more]

BLAST of MS020113 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32290.1	1.6e-07	37.66	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]
AT3G52060.1	2.8e-07	38.96	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]
AT3G52060.2	2.8e-07	38.96	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]
AT5G25330.1	8.9e-06	35.90	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]
AT5G22070.1	1.2e-05	36.71	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31042:SF108	EXPRESSED PROTEIN	coord: 3..65
IPR044174	Glycosyltransferase BC10-like	PANTHER	PTHR31042	CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED	coord: 3..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020113.1	MS020113.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016757	glycosyltransferase activity