MS020089 (gene) Bitter gourd (TR) v1

Overview


Name	MS020089
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	transcription factor PRE3-like
Location	scaffold22: 1624037 .. 1624394 (-)
RNA-Seq Expression	MS020089
Synteny	MS020089

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGGAGATCTCGTTCGAGGCCATCAGCTGGTGGTGTGAGAATCAGCGACGAACAGATCACCGACCTCATCCACAAGCTCCAACAGCTCTTGCCTGAGATTCGCAACGCCCATTCCGACAAGGTACACAAACACAACATATGAGATTTGTTAGTAAATTTTAATAAAATCCTGCATGTCTTGTGAGTTCGGTGGTGATTCGGTTTTGCAGGTTTCGTCTGCAAAGGTTTTGCAGGAAACGTGCAACTACATTCGGAGGCTACACCGGGAGGTGGACGATCTGAGCGAGCGGCTGTCGGGGTTGTTGGCGACGTCGGACACGGCCCAAGCGGCCATTATAAGAAGCTTGCTCACG

mRNA sequence

ATGTCTGGGAGATCTCGTTCGAGGCCATCAGCTGGTGGTGTGAGAATCAGCGACGAACAGATCACCGACCTCATCCACAAGCTCCAACAGCTCTTGCCTGAGATTCGCAACGCCCATTCCGACAAGGTTTCGTCTGCAAAGGTTTTGCAGGAAACGTGCAACTACATTCGGAGGCTACACCGGGAGGTGGACGATCTGAGCGAGCGGCTGTCGGGGTTGTTGGCGACGTCGGACACGGCCCAAGCGGCCATTATAAGAAGCTTGCTCACG

Coding sequence (CDS)

ATGTCTGGGAGATCTCGTTCGAGGCCATCAGCTGGTGGTGTGAGAATCAGCGACGAACAGATCACCGACCTCATCCACAAGCTCCAACAGCTCTTGCCTGAGATTCGCAACGCCCATTCCGACAAGGTTTCGTCTGCAAAGGTTTTGCAGGAAACGTGCAACTACATTCGGAGGCTACACCGGGAGGTGGACGATCTGAGCGAGCGGCTGTCGGGGTTGTTGGCGACGTCGGACACGGCCCAAGCGGCCATTATAAGAAGCTTGCTCACG

Protein sequence

MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT

Homology

[Close]

BLAST of MS020089 vs. NCBI nr
Match: XP_022137442.1 (transcription factor PRE3-like [Momordica charantia])

HSP 1 Score: 172.2 bits (435), Expect = 2.1e-39
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLH 60
          MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLH
Sbjct: 1  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLH 60

Query: 61 REVDDLSERLSGLLATSDTAQAAIIRSLLT 91
          REVDDLSERLSGLLATSDTAQAAIIRSLLT
Sbjct: 61 REVDDLSERLSGLLATSDTAQAAIIRSLLT 90

[Close]

BLAST of MS020089 vs. NCBI nr
Match: XP_016899225.1 (PREDICTED: transcription factor PRE3-like [Cucumis melo] >XP_038895619.1 transcription factor PRE3-like [Benincasa hispida])

HSP 1 Score: 152.1 bits (383), Expect = 2.2e-33
Identity = 82/90 (91.11%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLH 60
          MSGRSRSR S+ GVRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LH
Sbjct: 1  MSGRSRSRQSS-GVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSGLLATSDTAQAAIIRSLLT 91
          REVDDLSERLS LLATSDTAQAAIIRSLLT
Sbjct: 61 REVDDLSERLSELLATSDTAQAAIIRSLLT 89

[Close]

BLAST of MS020089 vs. NCBI nr
Match: KAG6573012.1 (putative serine/threonine-protein kinase PBL3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-32
Identity = 81/90 (90.00%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLH 60
          MSGRSRSR S+  VRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LH
Sbjct: 1  MSGRSRSRQSS-AVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSGLLATSDTAQAAIIRSLLT 91
          REVDDLSERLS LLATSDTAQAAIIRSLLT
Sbjct: 61 REVDDLSERLSELLATSDTAQAAIIRSLLT 89

[Close]

BLAST of MS020089 vs. NCBI nr
Match: XP_004152438.1 (transcription factor PRE3 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-32
Identity = 81/90 (90.00%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLH 60
          MSGRSRSR S+  VRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LH
Sbjct: 1  MSGRSRSRQSS-SVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSGLLATSDTAQAAIIRSLLT 91
          REVDDLSERLS LLATSDTAQAAIIRSLLT
Sbjct: 61 REVDDLSERLSELLATSDTAQAAIIRSLLT 89

[Close]

BLAST of MS020089 vs. NCBI nr
Match: XP_022955105.1 (transcription factor PRE3-like [Cucurbita moschata])

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-32
Identity = 81/90 (90.00%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLH 60
          MSGRSRSR S+  VRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LH
Sbjct: 1  MSGRSRSRQSS-AVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSGLLATSDTAQAAIIRSLLT 91
          REVDDLSERLS LLATSDTAQAAIIRSLLT
Sbjct: 61 REVDDLSERLSELLATSDTAQAAIIRSLLT 89

[Close]

BLAST of MS020089 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.7e-28
Identity = 71/92 (77.17%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MSG-RSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNA-HSDKVSSAKVLQETCNYIRR 60
          MSG RSRSR S+G  RIS++QI DLI KLQQLLPE+R++  SDKVS+A+VLQ+TCNYIR 
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60

Query: 61 LHREVDDLSERLSGLLATSDTAQAAIIRSLLT 91
          LHREVDDLSERLS LLA SDTAQAA+IRSLLT
Sbjct: 61 LHREVDDLSERLSELLANSDTAQAALIRSLLT 92

[Close]

BLAST of MS020089 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-24
Identity = 65/93 (69.89%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 1  MSGR--SRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRR 60
          MS R  SRSR S G  RISD+QI+DL+ KLQ L+PE+R   SDKVS++KVLQETCNYIR 
Sbjct: 1  MSSRRSSRSRQS-GSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRN 60

Query: 61 LHREVDDLSERLSGLLATSD--TAQAAIIRSLL 90
          LHREVDDLS+RLS LLA++D  +A+AAIIRSLL
Sbjct: 61 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of MS020089 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.3e-24
Identity = 65/90 (72.22%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 2  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHR 61
          S RSRSR S G  RI+DEQI+DL+ KLQ LLPE R   +D+V S++VLQETCNYIR LH+
Sbjct: 3  SRRSRSRQS-GSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLHQ 62

Query: 62 EVDDLSERLSGLLATSD--TAQAAIIRSLL 90
          EVDDLSERLS LLATSD  +AQAAIIRSLL
Sbjct: 63 EVDDLSERLSELLATSDMSSAQAAIIRSLL 91

[Close]

BLAST of MS020089 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.3e-24
Identity = 65/90 (72.22%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 2  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHR 61
          S RSRSR S G  RI+DEQI+DL+ KLQ LLPE R   +D+V S++VLQETCNYIR LH+
Sbjct: 3  SRRSRSRQS-GSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLHQ 62

Query: 62 EVDDLSERLSGLLATSD--TAQAAIIRSLL 90
          EVDDLSERLS LLATSD  +AQAAIIRSLL
Sbjct: 63 EVDDLSERLSELLATSDMSSAQAAIIRSLL 91

[Close]

BLAST of MS020089 vs. ExPASy Swiss-Prot
Match: A2Z730 (Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.8e-23
Identity = 62/91 (68.13%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 1  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLH 60
          MS RSRSR S+   RI+DEQI DL+ KLQ LLPE R   +D+V SA+VLQETC+YIR LH
Sbjct: 1  MSSRSRSRASS-AARITDEQIGDLVSKLQALLPEARLRSNDRVPSARVLQETCSYIRSLH 60

Query: 61 REVDDLSERLSGLLATSD--TAQAAIIRSLL 90
          REVDDLSERL+ LLA +D  TAQAA+IR LL
Sbjct: 61 REVDDLSERLAELLAAADVSTAQAAVIRGLL 90

[Close]

BLAST of MS020089 vs. ExPASy TrEMBL
Match: A0A6J1C896 (transcription factor PRE3-like OS=Momordica charantia OX=3673 GN=LOC111008886 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.0e-39
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLH 60
          MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLH
Sbjct: 1  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLH 60

Query: 61 REVDDLSERLSGLLATSDTAQAAIIRSLLT 91
          REVDDLSERLSGLLATSDTAQAAIIRSLLT
Sbjct: 61 REVDDLSERLSGLLATSDTAQAAIIRSLLT 90

[Close]

BLAST of MS020089 vs. ExPASy TrEMBL
Match: A0A1S4DU40 (transcription factor PRE3-like OS=Cucumis melo OX=3656 GN=LOC103482850 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 82/90 (91.11%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLH 60
          MSGRSRSR S+ GVRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LH
Sbjct: 1  MSGRSRSRQSS-GVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSGLLATSDTAQAAIIRSLLT 91
          REVDDLSERLS LLATSDTAQAAIIRSLLT
Sbjct: 61 REVDDLSERLSELLATSDTAQAAIIRSLLT 89

[Close]

BLAST of MS020089 vs. ExPASy TrEMBL
Match: A0A0A0LQQ1 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045430 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.3e-33
Identity = 81/90 (90.00%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLH 60
          MSGRSRSR S+  VRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LH
Sbjct: 1  MSGRSRSRQSS-SVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSGLLATSDTAQAAIIRSLLT 91
          REVDDLSERLS LLATSDTAQAAIIRSLLT
Sbjct: 61 REVDDLSERLSELLATSDTAQAAIIRSLLT 89

[Close]

BLAST of MS020089 vs. ExPASy TrEMBL
Match: A0A6J1GU92 (transcription factor PRE3-like OS=Cucurbita moschata OX=3662 GN=LOC111457173 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.3e-33
Identity = 81/90 (90.00%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLH 60
          MSGRSRSR S+  VRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LH
Sbjct: 1  MSGRSRSRQSS-AVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSGLLATSDTAQAAIIRSLLT 91
          REVDDLSERLS LLATSDTAQAAIIRSLLT
Sbjct: 61 REVDDLSERLSELLATSDTAQAAIIRSLLT 89

[Close]

BLAST of MS020089 vs. ExPASy TrEMBL
Match: A0A6J1K5U5 (transcription factor PRE3-like OS=Cucurbita maxima OX=3661 GN=LOC111490325 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.5e-32
Identity = 80/90 (88.89%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLH 60
          MSG SRSR S+  VRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LH
Sbjct: 1  MSGISRSRQSS-AVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSGLLATSDTAQAAIIRSLLT 91
          REVDDLSERLS LLATSDTAQAAIIRSLLT
Sbjct: 61 REVDDLSERLSELLATSDTAQAAIIRSLLT 89

[Close]

BLAST of MS020089 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 126.3 bits (316), Expect = 1.2e-29
Identity = 71/92 (77.17%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MSG-RSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNA-HSDKVSSAKVLQETCNYIRR 60
          MSG RSRSR S+G  RIS++QI DLI KLQQLLPE+R++  SDKVS+A+VLQ+TCNYIR 
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60

Query: 61 LHREVDDLSERLSGLLATSDTAQAAIIRSLLT 91
          LHREVDDLSERLS LLA SDTAQAA+IRSLLT
Sbjct: 61 LHREVDDLSERLSELLANSDTAQAALIRSLLT 92

[Close]

BLAST of MS020089 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 112.8 bits (281), Expect = 1.4e-25
Identity = 65/93 (69.89%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 1  MSGR--SRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRR 60
          MS R  SRSR S G  RISD+QI+DL+ KLQ L+PE+R   SDKVS++KVLQETCNYIR 
Sbjct: 1  MSSRRSSRSRQS-GSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRN 60

Query: 61 LHREVDDLSERLSGLLATSD--TAQAAIIRSLL 90
          LHREVDDLS+RLS LLA++D  +A+AAIIRSLL
Sbjct: 61 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of MS020089 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 99.4 bits (246), Expect = 1.6e-21
Identity = 57/92 (61.96%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 1  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEI-RNAHSDKVSSAKVLQETCNYIRRL 60
          MS R RSR ++   RISD+Q+ DL+ KL+Q LPEI     SDKVS++KVLQETCNYIR+L
Sbjct: 1  MSNR-RSRQTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKL 60

Query: 61 HREVDDLSERLSGLL--ATSDTAQAAIIRSLL 90
          HREVD+LS+RLS LL     D+ +AA+IRSLL
Sbjct: 61 HREVDNLSDRLSQLLDSVDEDSPEAAVIRSLL 91

[Close]

BLAST of MS020089 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 97.8 bits (242), Expect = 4.6e-21
Identity = 55/92 (59.78%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 1  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIR-NAHSDKVSSAKVLQETCNYIRRL 60
          MS   RSR ++   RISD+QITDLI KL+Q +PEIR N  S+ VS++KVLQETCNYIR L
Sbjct: 1  MSSSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSGLLATSD--TAQAAIIRSLL 90
          ++E DDLS+RL+ LL + D  + QAA+IRSL+
Sbjct: 61 NKEADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of MS020089 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 97.4 bits (241), Expect = 6.1e-21
Identity = 57/92 (61.96%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 1  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEI-RNAHSDKVSSAKVLQETCNYIRRL 60
          MS R RSR S+   RISD Q+ DL+ KL+Q+LPEI +   SDK S++KVLQETCNYIR L
Sbjct: 1  MSNR-RSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSGLLAT--SDTAQAAIIRSLL 90
          +REVD+LSERLS LL +   D+ +AA+IRSLL
Sbjct: 61 NREVDNLSERLSQLLESVDEDSPEAAVIRSLL 91

The following BLAST results are available for this feature:

BLAST of MS020089 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137442.1	2.1e-39	100.00	transcription factor PRE3-like [Momordica charantia]	[more]
XP_016899225.1	2.2e-33	91.11	PREDICTED: transcription factor PRE3-like [Cucumis melo] >XP_038895619.1 transcr...	[more]
KAG6573012.1	1.1e-32	90.00	putative serine/threonine-protein kinase PBL3, partial [Cucurbita argyrosperma s...	[more]
XP_004152438.1	1.1e-32	90.00	transcription factor PRE3 [Cucumis sativus]	[more]
XP_022955105.1	1.1e-32	90.00	transcription factor PRE3-like [Cucurbita moschata]	[more]

BLAST of MS020089 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CA64	1.7e-28	77.17	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]
Q8GW32	2.0e-24	69.89	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
B8APB5	3.3e-24	72.22	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]
Q0DUR2	3.3e-24	72.22	Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ...	[more]
A2Z730	4.8e-23	68.13	Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV...	[more]

BLAST of MS020089 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C896	1.0e-39	100.00	transcription factor PRE3-like OS=Momordica charantia OX=3673 GN=LOC111008886 PE...	[more]
A0A1S4DU40	1.1e-33	91.11	transcription factor PRE3-like OS=Cucumis melo OX=3656 GN=LOC103482850 PE=4 SV=1	[more]
A0A0A0LQQ1	5.3e-33	90.00	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045430 PE=4 S...	[more]
A0A6J1GU92	5.3e-33	90.00	transcription factor PRE3-like OS=Cucurbita moschata OX=3662 GN=LOC111457173 PE=...	[more]
A0A6J1K5U5	4.5e-32	88.89	transcription factor PRE3-like OS=Cucurbita maxima OX=3661 GN=LOC111490325 PE=4 ...	[more]

BLAST of MS020089 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74500.1	1.2e-29	77.17	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT1G26945.1	1.4e-25	69.89	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G28857.1	1.6e-21	61.96	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G15160.1	4.6e-21	59.78	BANQUO 2	[more]
AT5G39860.1	6.1e-21	61.96	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 56..76
None	No IPR available	PANTHER	PTHR46446:SF3	TRANSCRIPTION FACTOR PRE3	coord: 2..89
None	No IPR available	CDD	cd11442	bHLH_AtPRE_like	coord: 10..76 e-value: 1.37482E-20 score: 75.4175
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 20..60 e-value: 1.7E-6 score: 27.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 5..59 score: 10.213443
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 18..87 e-value: 1.7E-9 score: 39.8
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 19..76
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 2..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020089.1	MS020089.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0046983	protein dimerization activity