MS020032 (gene) Bitter gourd (TR) v1

Overview


Name	MS020032
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein DELETION OF SUV3 SUPPRESSOR 1(I)-like
Location	scaffold22: 1326042 .. 1326167 (-)
RNA-Seq Expression	MS020032
Synteny	MS020032

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGAAGTCAAAGAAGAAGGAAAAGAAATTACACAGCAGTGGGAAGACGACTGGGACGATGATGATGTCAACGACGACTTCTCTTTGCAGCTCAGGAGAGAATTAGAGAGCAATACCGAGAAGAAA

mRNA sequence

TGGGAAGTCAAAGAAGAAGGAAAAGAAATTACACAGCAGTGGGAAGACGACTGGGACGATGATGATGTCAACGACGACTTCTCTTTGCAGCTCAGGAGAGAATTAGAGAGCAATACCGAGAAGAAA

Coding sequence (CDS)

TGGGAAGTCAAAGAAGAAGGAAAAGAAATTACACAGCAGTGGGAAGACGACTGGGACGATGATGATGTCAACGACGACTTCTCTTTGCAGCTCAGGAGAGAATTAGAGAGCAATACCGAGAAGAAA

Protein sequence

WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK

Homology

[Close]

BLAST of MS020032 vs. NCBI nr
Match: XP_022923645.1 (protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita moschata] >XP_022923646.1 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita moschata] >XP_023000666.1 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita maxima] >XP_023000667.1 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita maxima] >XP_023519106.1 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita pepo subsp. pepo] >XP_023519107.1 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 86.3 bits (212), Expect = 7.0e-14
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 43
          WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK
Sbjct: 32 WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 73

[Close]

BLAST of MS020032 vs. NCBI nr
Match: XP_004152470.1 (protein DELETION OF SUV3 SUPPRESSOR 1(I) [Cucumis sativus] >XP_008438249.1 PREDICTED: protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucumis melo] >KAA0055220.1 putative 26S proteasome complex subunit sem1-1 [Cucumis melo var. makuwa] >KGN64302.1 hypothetical protein Csa_013524 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 43
          WE+KEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK
Sbjct: 32 WEMKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 73

[Close]

BLAST of MS020032 vs. NCBI nr
Match: XP_038893721.1 (protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Benincasa hispida] >XP_038893722.1 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Benincasa hispida])

HSP 1 Score: 84.0 bits (206), Expect = 3.5e-13
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1  WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 43
          WEVKEEGKE+TQQWEDDWDDDDVNDDFSLQLRRELESN EKK
Sbjct: 32 WEVKEEGKEVTQQWEDDWDDDDVNDDFSLQLRRELESNAEKK 73

[Close]

BLAST of MS020032 vs. NCBI nr
Match: XP_019232548.1 (PREDICTED: protein DELETION OF SUV3 SUPPRESSOR 1(I)-like isoform X2 [Nicotiana attenuata])

HSP 1 Score: 83.6 bits (205), Expect = 4.5e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1  WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 43
          WE KEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK
Sbjct: 33 WEDKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 74

[Close]

BLAST of MS020032 vs. NCBI nr
Match: XP_019232547.1 (PREDICTED: protein DELETION OF SUV3 SUPPRESSOR 1(I)-like isoform X1 [Nicotiana attenuata])

HSP 1 Score: 83.6 bits (205), Expect = 4.5e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1   WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 43
           WE KEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK
Sbjct: 78  WEDKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 119

[Close]

BLAST of MS020032 vs. ExPASy Swiss-Prot
Match: Q9XIR8 (Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana OX=3702 GN=DSS1(I) PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.4e-11
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1  WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 43
          W  KEE KE++QQWEDDWDDDDVNDDFS QLR+ELE+ T+KK
Sbjct: 33 WLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 74

[Close]

BLAST of MS020032 vs. ExPASy Swiss-Prot
Match: Q9FL96 (Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana OX=3702 GN=DSS1(V) PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.4e-09
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 1  WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 43
          W  KEE KE++ QWEDDWDDDDV+DDFS QL++ELE+ +EKK
Sbjct: 32 WLEKEEVKEVSLQWEDDWDDDDVSDDFSRQLKKELENASEKK 73

[Close]

BLAST of MS020032 vs. ExPASy TrEMBL
Match: A0A6J1KGG4 (protein DELETION OF SUV3 SUPPRESSOR 1(I)-like OS=Cucurbita maxima OX=3661 GN=LOC111495037 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.4e-14
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 43
          WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK
Sbjct: 32 WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 73

[Close]

BLAST of MS020032 vs. ExPASy TrEMBL
Match: A0A6J1ECF8 (protein DELETION OF SUV3 SUPPRESSOR 1(I)-like OS=Cucurbita moschata OX=3662 GN=LOC111431292 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.4e-14
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 43
          WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK
Sbjct: 32 WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 73

[Close]

BLAST of MS020032 vs. ExPASy TrEMBL
Match: A0A5A7UJ57 (Putative 26S proteasome complex subunit sem1-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G00610 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.5e-14
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 43
          WE+KEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK
Sbjct: 32 WEMKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 73

[Close]

BLAST of MS020032 vs. ExPASy TrEMBL
Match: A0A0A0LU33 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046000 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.5e-14
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 43
          WE+KEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK
Sbjct: 32 WEMKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 73

[Close]

BLAST of MS020032 vs. ExPASy TrEMBL
Match: A0A1S3AW15 (protein DELETION OF SUV3 SUPPRESSOR 1(I)-like OS=Cucumis melo OX=3656 GN=LOC103483411 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.5e-14
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 1  WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 43
          WE+KEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK
Sbjct: 32 WEMKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 73

[Close]

BLAST of MS020032 vs. TAIR 10
Match: AT1G64750.1 (deletion of SUV3 suppressor 1(I) )

HSP 1 Score: 67.4 bits (163), Expect = 3.1e-12
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1  WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 43
          W  KEE KE++QQWEDDWDDDDVNDDFS QLR+ELE+ T+KK
Sbjct: 33 WLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 74

[Close]

BLAST of MS020032 vs. TAIR 10
Match: AT1G64750.2 (deletion of SUV3 suppressor 1(I) )

HSP 1 Score: 67.4 bits (163), Expect = 3.1e-12
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1  WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 43
          W  KEE KE++QQWEDDWDDDDVNDDFS QLR+ELE+ T+KK
Sbjct: 33 WLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 74

[Close]

BLAST of MS020032 vs. TAIR 10
Match: AT1G64750.3 (deletion of SUV3 suppressor 1(I) )

HSP 1 Score: 67.4 bits (163), Expect = 3.1e-12
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1   WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 43
           W  KEE KE++QQWEDDWDDDDVNDDFS QLR+ELE+ T+KK
Sbjct: 74  WLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 115

[Close]

BLAST of MS020032 vs. TAIR 10
Match: AT5G45010.1 (DSS1 homolog on chromosome V )

HSP 1 Score: 60.5 bits (145), Expect = 3.8e-10
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 1  WEVKEEGKEITQQWEDDWDDDDVNDDFSLQLRRELESNTEKK 43
          W  KEE KE++ QWEDDWDDDDV+DDFS QL++ELE+ +EKK
Sbjct: 32 WLEKEEVKEVSLQWEDDWDDDDVSDDFSRQLKKELENASEKK 73

The following BLAST results are available for this feature:

BLAST of MS020032 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923645.1	7.0e-14	100.00	protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita moschata] >XP_022923646...	[more]
XP_004152470.1	1.6e-13	97.62	protein DELETION OF SUV3 SUPPRESSOR 1(I) [Cucumis sativus] >XP_008438249.1 PREDI...	[more]
XP_038893721.1	3.5e-13	95.24	protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Benincasa hispida] >XP_038893722....	[more]
XP_019232548.1	4.5e-13	97.62	PREDICTED: protein DELETION OF SUV3 SUPPRESSOR 1(I)-like isoform X2 [Nicotiana a...	[more]
XP_019232547.1	4.5e-13	97.62	PREDICTED: protein DELETION OF SUV3 SUPPRESSOR 1(I)-like isoform X1 [Nicotiana a...	[more]

BLAST of MS020032 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XIR8	4.4e-11	76.19	Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana OX=3702 GN=DSS1...	[more]
Q9FL96	5.4e-09	69.05	Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana OX=3702 GN=DSS1(V) ...	[more]

BLAST of MS020032 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KGG4	3.4e-14	100.00	protein DELETION OF SUV3 SUPPRESSOR 1(I)-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1ECF8	3.4e-14	100.00	protein DELETION OF SUV3 SUPPRESSOR 1(I)-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5A7UJ57	7.5e-14	97.62	Putative 26S proteasome complex subunit sem1-1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0LU33	7.5e-14	97.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046000 PE=4 SV=1	[more]
A0A1S3AW15	7.5e-14	97.62	protein DELETION OF SUV3 SUPPRESSOR 1(I)-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of MS020032 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64750.1	3.1e-12	76.19	deletion of SUV3 suppressor 1(I)	[more]
AT1G64750.2	3.1e-12	76.19	deletion of SUV3 suppressor 1(I)	[more]
AT1G64750.3	3.1e-12	76.19	deletion of SUV3 suppressor 1(I)	[more]
AT5G45010.1	3.8e-10	69.05	DSS1 homolog on chromosome V	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007834	DSS1/SEM1	SMART	SM01385	DSS1_SEM1_2	coord: 1..37 e-value: 6.4E-4 score: 27.6
IPR007834	DSS1/SEM1	PFAM	PF05160	DSS1_SEM1	coord: 2..36 e-value: 2.1E-11 score: 43.8
IPR007834	DSS1/SEM1	PANTHER	PTHR16771	26 PROTEASOME COMPLEX SUBUNIT DSS1	coord: 1..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR16771:SF8	OS01G0316800 PROTEIN	coord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020032.1	MS020032.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0043248	proteasome assembly
cellular_component	GO:0008541	proteasome regulatory particle, lid subcomplex