MS019968 (gene) Bitter gourd (TR) v1

Overview
NameMS019968
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRPM1-interacting protein 4-like
Locationscaffold22: 841804 .. 842110 (+)
RNA-Seq ExpressionMS019968
SyntenyMS019968
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTTGCAGCAGGACAGGGGTCGTCCACTGCCAAAGTTTGGTGAATGGGATGTAAATAATCCTGCATCTGCGGAAGGATTTACAGTCATATTTAACAAGGCTAGAGATGAGAAGAAGACCACTGGAACTGCTGCCAGCACGGTTTCACCTCAGAGAAATGAGTCTATCTATAACAATGAAACTTTCCCTCAATATCATCCACCGAAGGTCTGTTTAATAGAAGGCGTGAGAATAAATTTGTTATGAACATCTTCAAGTCTAATCTTTTCTTGGTATTTGGATGCAGAAGAGGTGGTTTTGCTGTGGT

mRNA sequence

TTGTTGCAGCAGGACAGGGGTCGTCCACTGCCAAAGTTTGGTGAATGGGATGTAAATAATCCTGCATCTGCGGAAGGATTTACAGTCATATTTAACAAGGCTAGAGATGAGAAGAAGACCACTGGAACTGCTGCCAGCACGGTTTCACCTCAGAGAAATGAGTCTATCTATAACAATGAAACTTTCCCTCAATATCATCCACCGAAGAAGAGGTGGTTTTGCTGTGGT

Coding sequence (CDS)

TTGTTGCAGCAGGACAGGGGTCGTCCACTGCCAAAGTTTGGTGAATGGGATGTAAATAATCCTGCATCTGCGGAAGGATTTACAGTCATATTTAACAAGGCTAGAGATGAGAAGAAGACCACTGGAACTGCTGCCAGCACGGTTTCACCTCAGAGAAATGAGTCTATCTATAACAATGAAACTTTCCCTCAATATCATCCACCGAAGAAGAGGTGGTTTTGCTGTGGT

Protein sequence

LLQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG
Homology
BLAST of MS019968 vs. NCBI nr
Match: XP_022137179.1 (uncharacterized protein LOC111008714 isoform X1 [Momordica charantia])

HSP 1 Score: 162.5 bits (410), Expect = 1.4e-36
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 3   QQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETF 62
           +QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETF
Sbjct: 63  EQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETF 122

Query: 63  PQYHPPKKRWFCCG 77
           PQYHPPKKRWFCCG
Sbjct: 123 PQYHPPKKRWFCCG 136

BLAST of MS019968 vs. NCBI nr
Match: XP_022137180.1 (uncharacterized protein LOC111008714 isoform X2 [Momordica charantia])

HSP 1 Score: 160.6 bits (405), Expect = 5.3e-36
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 4   QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFP 63
           +DRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFP
Sbjct: 63  EDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFP 122

Query: 64  QYHPPKKRWFCCG 77
           QYHPPKKRWFCCG
Sbjct: 123 QYHPPKKRWFCCG 135

BLAST of MS019968 vs. NCBI nr
Match: XP_008439256.1 (PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 2.1e-29
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 0

Query: 1  LLQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNE 60
          +  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKTTG AA+ V  +RNE ++NNE
Sbjct: 1  MASQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNE 60

Query: 61 TFPQYHPPKKRWFCCG 77
          ++PQY PPKKRWFCCG
Sbjct: 61 SYPQYPPPKKRWFCCG 76

BLAST of MS019968 vs. NCBI nr
Match: XP_008439265.1 (PREDICTED: RPM1-interacting protein 4 isoform X2 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 8.2e-29
Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = 0

Query: 2  LQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNET 61
          +  DRGRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKTTG AA+ V  +RNE ++NNE+
Sbjct: 1  MASDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNES 60

Query: 62 FPQYHPPKKRWFCCG 77
          +PQY PPKKRWFCCG
Sbjct: 61 YPQYPPPKKRWFCCG 75

BLAST of MS019968 vs. NCBI nr
Match: XP_022954832.1 (RPM1-interacting protein 4-like [Cucurbita moschata] >XP_023542808.1 RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo] >KAG6573102.1 Protein NOI4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012289.1 RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 61/73 (83.56%), Postives = 65/73 (89.04%), Query Frame = 0

Query: 4  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFP 63
          QD+GRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTG+ A+ VS Q NE  YNNE+FP
Sbjct: 4  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNESFP 63

Query: 64 QYHPPKKRWFCCG 77
          Q  PPKKRWFCCG
Sbjct: 64 QSPPPKKRWFCCG 76

BLAST of MS019968 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 6.3e-16
Identity = 42/71 (59.15%), Postives = 48/71 (67.61%), Query Frame = 0

Query: 5  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQ 64
          D+GRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT G   S    + +E    +     
Sbjct: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS--PGKSSEGHVKSGGGDP 62

Query: 65 YHPPKKRWFCC 76
            P  K+W CC
Sbjct: 63 SKPQPKKWLCC 71

BLAST of MS019968 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.5e-06
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 0

Query: 10  LPKFGEWDVNNPASAEGFTVIFNKARDEKKT-TGTAASTVSPQRNESIYNNET 62
           +PKFG+WD NNP+SA+G+T IFNK R+E+ +    + S+ +P    S   N T
Sbjct: 148 VPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSSRNPNNT 200

BLAST of MS019968 vs. ExPASy TrEMBL
Match: A0A6J1C6I4 (uncharacterized protein LOC111008714 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008714 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 6.7e-37
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 3   QQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETF 62
           +QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETF
Sbjct: 63  EQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETF 122

Query: 63  PQYHPPKKRWFCCG 77
           PQYHPPKKRWFCCG
Sbjct: 123 PQYHPPKKRWFCCG 136

BLAST of MS019968 vs. ExPASy TrEMBL
Match: A0A6J1C5Z3 (uncharacterized protein LOC111008714 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008714 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.6e-36
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 4   QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFP 63
           +DRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFP
Sbjct: 63  EDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFP 122

Query: 64  QYHPPKKRWFCCG 77
           QYHPPKKRWFCCG
Sbjct: 123 QYHPPKKRWFCCG 135

BLAST of MS019968 vs. ExPASy TrEMBL
Match: A0A1S3AZ04 (RPM1-interacting protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484092 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.0e-29
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 0

Query: 1  LLQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNE 60
          +  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKTTG AA+ V  +RNE ++NNE
Sbjct: 1  MASQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNE 60

Query: 61 TFPQYHPPKKRWFCCG 77
          ++PQY PPKKRWFCCG
Sbjct: 61 SYPQYPPPKKRWFCCG 76

BLAST of MS019968 vs. ExPASy TrEMBL
Match: A0A1S3AYE6 (RPM1-interacting protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484092 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.0e-29
Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = 0

Query: 2  LQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNET 61
          +  DRGRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKTTG AA+ V  +RNE ++NNE+
Sbjct: 1  MASDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKTTGNAANMVPKERNEPVFNNES 60

Query: 62 FPQYHPPKKRWFCCG 77
          +PQY PPKKRWFCCG
Sbjct: 61 YPQYPPPKKRWFCCG 75

BLAST of MS019968 vs. ExPASy TrEMBL
Match: A0A6J1GRZ4 (RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111456977 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.7e-29
Identity = 61/73 (83.56%), Postives = 65/73 (89.04%), Query Frame = 0

Query: 4  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFP 63
          QD+GRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTG+ A+ VS Q NE  YNNE+FP
Sbjct: 4  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGSVANMVSSQSNEPAYNNESFP 63

Query: 64 QYHPPKKRWFCCG 77
          Q  PPKKRWFCCG
Sbjct: 64 QSPPPKKRWFCCG 76

BLAST of MS019968 vs. TAIR 10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-18
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 2  LQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAA----STVSPQRNE-SI 61
          + +++G+PLPKFGEWDVNNPASAEGFTVIF+KA DEKKT   +     S VSPQRN+ S 
Sbjct: 1  MAENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNSD 60

Query: 62 YNNETFPQYHPPKKRWFC 75
           NN    Q    K +WFC
Sbjct: 61 QNNNHSSQNPKAKNKWFC 78

BLAST of MS019968 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 86.7 bits (213), Expect = 9.0e-18
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 0

Query: 5  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQ 64
          D+GRPLPKFGEWDVN+P+SAEGFTVIFNKAR+EKK  G    + SP ++E  Y N+    
Sbjct: 3  DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGG---KSDSPGKDEPGY-NKNGEV 62

Query: 65 YHPPKKRWFCC 76
             P K+WFCC
Sbjct: 63 LEKPAKKWFCC 69

BLAST of MS019968 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 84.7 bits (208), Expect = 3.4e-17
Identity = 42/72 (58.33%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 4  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFP 63
          +D+GRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT G   S    + +E    +    
Sbjct: 18 RDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS--PGKSSEGHVKSGGGD 77

Query: 64 QYHPPKKRWFCC 76
             P  K+W CC
Sbjct: 78 PSKPQPKKWLCC 87

BLAST of MS019968 vs. TAIR 10
Match: AT3G48450.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 81.6 bits (200), Expect = 2.9e-16
Identity = 46/83 (55.42%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 5  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAA----STVSPQRNES--IYN 64
          +R RPLPKFGEWD  NP SAEGFTVIFNKARD+KKT  TA     S VSP RNE     N
Sbjct: 5  NRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKTMKTAVAGPESIVSPPRNEEPPKNN 64

Query: 65 NETFPQYHP-------PKKRWFC 75
          N     +H         KK+W C
Sbjct: 65 NNHHHNHHTRHSQTPRSKKKWLC 87

BLAST of MS019968 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-15
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0

Query: 4  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAAS 47
          +D+GRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT G   S
Sbjct: 18 RDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022137179.11.4e-3698.65uncharacterized protein LOC111008714 isoform X1 [Momordica charantia][more]
XP_022137180.15.3e-3698.63uncharacterized protein LOC111008714 isoform X2 [Momordica charantia][more]
XP_008439256.12.1e-2978.95PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo][more]
XP_008439265.18.2e-2978.67PREDICTED: RPM1-interacting protein 4 isoform X2 [Cucumis melo][more]
XP_022954832.11.4e-2883.56RPM1-interacting protein 4-like [Cucurbita moschata] >XP_023542808.1 RPM1-intera... [more]
Match NameE-valueIdentityDescription
O226336.3e-1659.15Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1[more]
Q8GYN53.5e-0645.28RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1C6I46.7e-3798.65uncharacterized protein LOC111008714 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1C5Z32.6e-3698.63uncharacterized protein LOC111008714 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A1S3AZ041.0e-2978.95RPM1-interacting protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484092 PE... [more]
A0A1S3AYE64.0e-2978.67RPM1-interacting protein 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484092 PE... [more]
A0A6J1GRZ46.7e-2983.56RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111456977 PE... [more]
Match NameE-valueIdentityDescription
AT5G63270.11.1e-1858.97RPM1-interacting protein 4 (RIN4) family protein [more]
AT2G04410.19.0e-1860.56RPM1-interacting protein 4 (RIN4) family protein [more]
AT5G55850.33.4e-1758.33RPM1-interacting protein 4 (RIN4) family protein [more]
AT3G48450.12.9e-1655.42RPM1-interacting protein 4 (RIN4) family protein [more]
AT5G55850.21.1e-1583.72RPM1-interacting protein 4 (RIN4) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008700RIN4, pathogenic type III effector avirulence factor Avr cleavage sitePFAMPF05627AvrRpt-cleavagecoord: 5..40
e-value: 2.6E-24
score: 84.3
NoneNo IPR availablePANTHERPTHR33159:SF69RPM1-INTERACTING PROTEIN 4-LIKEcoord: 3..75
IPR040387RPM1-interacting protein 4/NOI4PANTHERPTHR33159RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEINcoord: 3..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS019968.1MS019968.1mRNA