MS019955 (gene) Bitter gourd (TR) v1

Overview
NameMS019955
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold22: 777463 .. 777690 (+)
RNA-Seq ExpressionMS019955
SyntenyMS019955
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGTTAGAGAAAAGGGAAAAAATGGTGTCCAAAGTGAAGCAAATTCAGCCGCTGCAGCCGGCGGCAACGACGGCGCCGACGGTGGCGGCAAAGCAAATCCAGTGTAATAAAGCGAAGTTTCCGAAGTTCAAGAGAAGCAGCTCCAATGTTGAAGAAGACGGCGCCTCTTCCGCCATGCTCTTGCTTGCCTGCATTGCTTTCTCCCCCAGTTTTGGCCCCGTCGCCGGC

mRNA sequence

GCGTTAGAGAAAAGGGAAAAAATGGTGTCCAAAGTGAAGCAAATTCAGCCGCTGCAGCCGGCGGCAACGACGGCGCCGACGGTGGCGGCAAAGCAAATCCAGTGTAATAAAGCGAAGTTTCCGAAGTTCAAGAGAAGCAGCTCCAATGTTGAAGAAGACGGCGCCTCTTCCGCCATGCTCTTGCTTGCCTGCATTGCTTTCTCCCCCAGTTTTGGCCCCGTCGCCGGC

Coding sequence (CDS)

GCGTTAGAGAAAAGGGAAAAAATGGTGTCCAAAGTGAAGCAAATTCAGCCGCTGCAGCCGGCGGCAACGACGGCGCCGACGGTGGCGGCAAAGCAAATCCAGTGTAATAAAGCGAAGTTTCCGAAGTTCAAGAGAAGCAGCTCCAATGTTGAAGAAGACGGCGCCTCTTCCGCCATGCTCTTGCTTGCCTGCATTGCTTTCTCCCCCAGTTTTGGCCCCGTCGCCGGC

Protein sequence

ALEKREKMVSKVKQIQPLQPAATTAPTVAAKQIQCNKAKFPKFKRSSSNVEEDGASSAMLLLACIAFSPSFGPVAG
Homology
BLAST of MS019955 vs. NCBI nr
Match: KAG6584135.1 (hypothetical protein SDJN03_20067, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019725.1 hypothetical protein SDJN02_18688, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 49/74 (66.22%), Postives = 54/74 (72.97%), Query Frame = 0

Query: 8  MVSKVKQI-----QPLQPAATTAPTVAAKQIQCNKAKFPKFKRSSSNVEEDGASSAMLLL 67
          MVSKV++      Q +QP         AKQIQCNKAK+PKFKRS SNVEEDGASSAMLLL
Sbjct: 1  MVSKVEETLRMKHQQVQPPQAAEAAATAKQIQCNKAKYPKFKRSCSNVEEDGASSAMLLL 60

Query: 68 ACIAFSPSFGPVAG 77
          ACIAF+P F PV G
Sbjct: 61 ACIAFAPDFSPVLG 74

BLAST of MS019955 vs. NCBI nr
Match: KGN64384.1 (hypothetical protein Csa_013100 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 5.3e-12
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 0

Query: 6  EKMVSKVKQIQPLQPA-ATTAPTVAAKQIQCNKAKFPKFKRSSSNVEEDGASSAMLLLAC 65
          E +  K +Q+ P Q A A  A    AKQIQCNKAK+PKFKRSSSNVEEDGASSAMLLLAC
Sbjct: 7  ETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSAMLLLAC 66

Query: 66 IAFS 69
          IAF+
Sbjct: 67 IAFA 70

BLAST of MS019955 vs. NCBI nr
Match: KAG7012298.1 (hypothetical protein SDJN02_25050, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-10
Identity = 49/75 (65.33%), Postives = 55/75 (73.33%), Query Frame = 0

Query: 8  MVSKV------KQIQPLQPAATTAPTVAAKQIQCNKAKFPKFKRSSSNVEEDGASSAMLL 67
          MVSKV      KQ Q   P A  A   AAKQIQ NKAK+PKFKRSSS+V +DGASSA+LL
Sbjct: 1  MVSKVEEALRRKQQQVQTPHA--AAGAAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILL 60

Query: 68 LACIAFSPSFGPVAG 77
          LACIAFSP+  PV+G
Sbjct: 61 LACIAFSPASSPVSG 73

BLAST of MS019955 vs. NCBI nr
Match: KAG5028165.1 (hypothetical protein JHK87_011679 [Glycine soja])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = 0

Query: 5  REKMVSKV----KQIQPLQPAATTAPTVAAKQIQCNKAKFPKFKRSSSNVEEDGASSAML 64
          +E MVSKV    K+ + +QP A        KQIQCNK K  KFKRSSSN+EEDGASSA+L
Sbjct: 11 KEIMVSKVEEAMKRNKQMQPQAQNQQQQLQKQIQCNKGKAGKFKRSSSNLEEDGASSAIL 70

Query: 65 LLACIAFSPSF 72
           LACIA++PS+
Sbjct: 71 FLACIAYAPSY 81

BLAST of MS019955 vs. NCBI nr
Match: KAG4933043.1 (hypothetical protein JHK87_047045 [Glycine soja])

HSP 1 Score: 72.0 bits (175), Expect = 2.5e-09
Identity = 43/71 (60.56%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 5  REKMVSKV----KQIQPLQPAATTAPTVAAKQIQCNKAKFPKFKRSSSNVEEDGASSAML 64
          +E MVSKV    K+ + +QP A        KQIQCNK K  KFKRSSSN+EEDGASSA+L
Sbjct: 20 KEIMVSKVEEAMKRNKQMQPQAQNQQQQLQKQIQCNKGKAGKFKRSSSNLEEDGASSAIL 79

Query: 65 LLACIAFSPSF 72
           LACIA SPS+
Sbjct: 80 FLACIACSPSY 90

BLAST of MS019955 vs. ExPASy TrEMBL
Match: A0A0A0LTS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050230 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.6e-12
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 0

Query: 6  EKMVSKVKQIQPLQPA-ATTAPTVAAKQIQCNKAKFPKFKRSSSNVEEDGASSAMLLLAC 65
          E +  K +Q+ P Q A A  A    AKQIQCNKAK+PKFKRSSSNVEEDGASSAMLLLAC
Sbjct: 7  ETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSAMLLLAC 66

Query: 66 IAFS 69
          IAF+
Sbjct: 67 IAFA 70

BLAST of MS019955 vs. ExPASy TrEMBL
Match: I1K083 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_05G045400 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 0

Query: 8  MVSKV----KQIQPLQPAATTAPTVAAKQIQCNKAKFPKFKRSSSNVEEDGASSAMLLLA 67
          MVSKV    K+ + +QP A        KQIQCNK K  KFKRSSSN+EEDGASSA+L LA
Sbjct: 1  MVSKVEEAMKRNKQMQPQAQNQQQQLQKQIQCNKGKAGKFKRSSSNLEEDGASSAILFLA 60

Query: 68 CIAFSPSF 72
          CIA++PS+
Sbjct: 61 CIAYAPSY 68

BLAST of MS019955 vs. ExPASy TrEMBL
Match: A0A445KJ74 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_011276 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 0

Query: 8  MVSKV----KQIQPLQPAATTAPTVAAKQIQCNKAKFPKFKRSSSNVEEDGASSAMLLLA 67
          MVSKV    K+ + +QP A        KQIQCNK K  KFKRSSSN+EEDGASSA+L LA
Sbjct: 1  MVSKVEEAMKRNKQMQPQAQNQQQQLQKQIQCNKGKAGKFKRSSSNLEEDGASSAILFLA 60

Query: 68 CIAFSPSF 72
          CIA++PS+
Sbjct: 61 CIAYAPSY 68

BLAST of MS019955 vs. ExPASy TrEMBL
Match: A0A0B2Q248 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_045665 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.7e-09
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 0

Query: 8  MVSKV----KQIQPLQPAATTAPTVAAKQIQCNKAKFPKFKRSSSNVEEDGASSAMLLLA 67
          MVSKV    K+ + +QP A        KQIQCNK K  KFKRSSSN+EEDGASSA+L LA
Sbjct: 1  MVSKVEEAMKRNKQMQPQAQNQQQQLQKQIQCNKGKAGKFKRSSSNLEEDGASSAILFLA 60

Query: 68 CIAFSPSF 72
          CIA SPS+
Sbjct: 61 CIACSPSY 68

BLAST of MS019955 vs. ExPASy TrEMBL
Match: I1MUM3 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_17G127600 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.7e-09
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 0

Query: 8  MVSKV----KQIQPLQPAATTAPTVAAKQIQCNKAKFPKFKRSSSNVEEDGASSAMLLLA 67
          MVSKV    K+ + +QP A        KQIQCNK K  KFKRSSSN+EEDGASSA+L LA
Sbjct: 1  MVSKVEEAMKRNKQMQPQAQNQQQQLQKQIQCNKGKAGKFKRSSSNLEEDGASSAILFLA 60

Query: 68 CIAFSPSF 72
          CIA SPS+
Sbjct: 61 CIACSPSY 68

BLAST of MS019955 vs. TAIR 10
Match: AT5G50335.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 4.6e-06
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 0

Query: 35 CNKAKFPKFKRSSSNVEEDGASSAMLLLACIAFS 69
          CNK K  +FKRS+SN++ DGASSA+ LLACIA S
Sbjct: 35 CNKEKSCRFKRSTSNLDNDGASSAIFLLACIACS 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6584135.11.1e-1466.22hypothetical protein SDJN03_20067, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN64384.15.3e-1270.31hypothetical protein Csa_013100 [Cucumis sativus][more]
KAG7012298.11.3e-1065.33hypothetical protein SDJN02_25050, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG5028165.11.4e-0959.15hypothetical protein JHK87_011679 [Glycine soja][more]
KAG4933043.12.5e-0960.56hypothetical protein JHK87_047045 [Glycine soja][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LTS02.6e-1270.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050230 PE=4 SV=1[more]
I1K0831.6e-0960.29Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_05G045400 PE=4 SV=1[more]
A0A445KJ741.6e-0960.29Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_011276 PE=4 SV=1[more]
A0A0B2Q2482.7e-0961.76Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_045665 PE=4 SV=1[more]
I1MUM32.7e-0961.76Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_17G127600 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G50335.14.6e-0667.65unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38398EXPRESSED PROTEINcoord: 14..70
NoneNo IPR availablePANTHERPTHR38398:SF1EXPRESSED PROTEINcoord: 14..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS019955.1MS019955.1mRNA