MS019913 (gene) Bitter gourd (TR) v1

Overview
NameMS019913
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDUF4408 domain-containing protein
Locationscaffold22: 514514 .. 515044 (-)
RNA-Seq ExpressionMS019913
SyntenyMS019913
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTCTTTGGTTCCCATTTTTGAGTTCTCAACTAAGATAAAACCATACAAAATGGGTGTTAATATTATCAACAACAATATCATTCGTAGCTTCCTCCTCAGTTTTCTTACAGCTCTGGTTTCTGGGATCTTCTTTTTCATCTCCTTCTGGATTCTTCCATTTCTGCAGTCTTCTTCTTCCACTCCCACGGCCTCCGTTTTCCTCCTCGGAAACCTAATCGTCGCCGTCCTCGTCGGAGAATCCAAAATGTTTTCCCCAAAAACTTGCGATTCTGCAGTCGATGATGATGATGACTGTTTATTCGATGGGAGTTTTGGGGAGTGTTCGATCGGAGAAATGGAAGATGATTGTGATGAGGGTGAAAGGATTGATGAGTGGGAAATGAGTAATTTGGGTGATCGTGAGGAATTGAGTAGAAGGGCTGATGATTTTATTGCCAGAGTCAATATGCAGAGGAAGATTGAAGCTACGATACTTTCATATGGTTGCGAATGGACGACGATGAACAAAAAATATAGAAGAAGAAGAATC

mRNA sequence

TTTTCTTTGGTTCCCATTTTTGAGTTCTCAACTAAGATAAAACCATACAAAATGGGTGTTAATATTATCAACAACAATATCATTCGTAGCTTCCTCCTCAGTTTTCTTACAGCTCTGGTTTCTGGGATCTTCTTTTTCATCTCCTTCTGGATTCTTCCATTTCTGCAGTCTTCTTCTTCCACTCCCACGGCCTCCGTTTTCCTCCTCGGAAACCTAATCGTCGCCGTCCTCGTCGGAGAATCCAAAATGTTTTCCCCAAAAACTTGCGATTCTGCAGTCGATGATGATGATGACTGTTTATTCGATGGGAGTTTTGGGGAGTGTTCGATCGGAGAAATGGAAGATGATTGTGATGAGGGTGAAAGGATTGATGAGTGGGAAATGAGTAATTTGGGTGATCGTGAGGAATTGAGTAGAAGGGCTGATGATTTTATTGCCAGAGTCAATATGCAGAGGAAGATTGAAGCTACGATACTTTCATATGGTTGCGAATGGACGACGATGAACAAAAAATATAGAAGAAGAAGAATC

Coding sequence (CDS)

TTTTCTTTGGTTCCCATTTTTGAGTTCTCAACTAAGATAAAACCATACAAAATGGGTGTTAATATTATCAACAACAATATCATTCGTAGCTTCCTCCTCAGTTTTCTTACAGCTCTGGTTTCTGGGATCTTCTTTTTCATCTCCTTCTGGATTCTTCCATTTCTGCAGTCTTCTTCTTCCACTCCCACGGCCTCCGTTTTCCTCCTCGGAAACCTAATCGTCGCCGTCCTCGTCGGAGAATCCAAAATGTTTTCCCCAAAAACTTGCGATTCTGCAGTCGATGATGATGATGACTGTTTATTCGATGGGAGTTTTGGGGAGTGTTCGATCGGAGAAATGGAAGATGATTGTGATGAGGGTGAAAGGATTGATGAGTGGGAAATGAGTAATTTGGGTGATCGTGAGGAATTGAGTAGAAGGGCTGATGATTTTATTGCCAGAGTCAATATGCAGAGGAAGATTGAAGCTACGATACTTTCATATGGTTGCGAATGGACGACGATGAACAAAAAATATAGAAGAAGAAGAATC

Protein sequence

FSLVPIFEFSTKIKPYKMGVNIINNNIIRSFLLSFLTALVSGIFFFISFWILPFLQSSSSTPTASVFLLGNLIVAVLVGESKMFSPKTCDSAVDDDDDCLFDGSFGECSIGEMEDDCDEGERIDEWEMSNLGDREELSRRADDFIARVNMQRKIEATILSYGCEWTTMNKKYRRRRI
Homology
BLAST of MS019913 vs. NCBI nr
Match: XP_022137313.1 (uncharacterized protein LOC111008810 [Momordica charantia])

HSP 1 Score: 310.1 bits (793), Expect = 1.3e-80
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = 0

Query: 18  MGVNIINNNIIRSFLLSFLTALVSGIFFFISFWILPFLQSSSSTPTASVFLLGNLIVAVL 77
           MGVNIINNNII SFLLSFLTALVSGIFFFISFWILPFLQSSS+TPTASVFLLGNLIVAVL
Sbjct: 1   MGVNIINNNIIHSFLLSFLTALVSGIFFFISFWILPFLQSSSNTPTASVFLLGNLIVAVL 60

Query: 78  VGESKMFSPKTCDSAVDDDDDCLFDGSFGECSIGEMEDDCDEGERIDEWEMSNLGDREEL 137
           VGESKMFSPKTCDSAVDDDDDCLFDGSFGECSIGEMEDDCDEGERIDEWEMSNLGDREEL
Sbjct: 61  VGESKMFSPKTCDSAVDDDDDCLFDGSFGECSIGEMEDDCDEGERIDEWEMSNLGDREEL 120

Query: 138 SRRADDFIARVNMQRKIEATILSYGCEWTTMNKKYRRRRI 178
           SRRADDFIARVNMQRKIEATILSYGCEWTTMNKKYRRRRI
Sbjct: 121 SRRADDFIARVNMQRKIEATILSYGCEWTTMNKKYRRRRI 160

BLAST of MS019913 vs. NCBI nr
Match: XP_008446247.1 (PREDICTED: uncharacterized protein LOC103489033 [Cucumis melo] >KAA0055346.1 Protoheme IX farnesyltransferase [Cucumis melo var. makuwa] >TYJ99272.1 Protoheme IX farnesyltransferase [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-20
Identity = 79/175 (45.14%), Postives = 103/175 (58.86%), Query Frame = 0

Query: 23  INNNIIRSFLLSFLTALVSGIFFFISFWILPFLQSSSS--------------------TP 82
           +NN II   LLSFLTAL S +      WI+P L  SSS                    TP
Sbjct: 21  VNNIIINILLLSFLTALFSTL-----LWIIPLLLPSSSLLSLFLSSLSHSFNYPINFPTP 80

Query: 83  TASVFLLGNLIVAVLVGESKMFSPKTCDSAVDDDDDCLFDGSFGECSI--GEMEDDCDEG 142
           T  VF+LGNLIV +L+GESK+FS  T D      D C + GSF E S+  G+ +   +  
Sbjct: 81  T-FVFILGNLIVVLLIGESKIFSSTTPDPF--GFDICFYGGSFLETSVSEGDQKRASESF 140

Query: 143 ERIDEWEMSNLGDREELSRRADDFIARVNMQRKIEATILSYGCEWTTMNKKYRRR 176
           +  DEWE+ ++ + EELS+RADDFIARVNMQRKIEA ++ Y C+  T  K+YR++
Sbjct: 141 DEEDEWEIESV-NSEELSKRADDFIARVNMQRKIEAMMVVYCCDMMTTKKRYRKK 186

BLAST of MS019913 vs. NCBI nr
Match: XP_011660360.1 (uncharacterized protein LOC105436383 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 6.8e-18
Identity = 78/167 (46.71%), Postives = 100/167 (59.88%), Query Frame = 0

Query: 23  INNNIIRSFLL-SFLTALVSGIFFFISFWILPFLQSSS-----------STPTASVFLLG 82
           +NN II   LL  FLTAL+         WILP   SSS            TPT  VF+LG
Sbjct: 19  VNNIIINILLLCCFLTALL---------WILP---SSSLFHPSNYPINFPTPT-FVFILG 78

Query: 83  NLIVAVLVGESKMFSPKTCDSAVDDDDDCLFDGSFGE--CSIGEMEDDCDEGERIDEWEM 142
           NLIV +L+GESK+FS  T D      D C +DGSF E   S G+ +   +  +  DEWE+
Sbjct: 79  NLIVVLLIGESKVFSSTTPDPF--GFDICFYDGSFRETLVSEGDHKRTSESFDEEDEWEI 138

Query: 143 SNLGDREELSRRADDFIARVNMQRKIEATILSYGCEWTTMNKKYRRR 176
            ++ + EELS+RADDFIARVNMQRKIEA ++ Y C+  TM K+Y ++
Sbjct: 139 ESV-NSEELSKRADDFIARVNMQRKIEAMMVMYCCDMMTMKKRYTKK 169

BLAST of MS019913 vs. NCBI nr
Match: KAG6573141.1 (hypothetical protein SDJN03_27028, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.8 bits (242), Expect = 9.8e-17
Identity = 75/173 (43.35%), Postives = 102/173 (58.96%), Query Frame = 0

Query: 10  STKIKPYKMGVNIINNNIIRSFLLSFLTALVSGIFFFISFWILPFLQSSSSTPT-ASVFL 69
           S+KI       NI   + + + +L FL AL     FFI    LP    S + PT  SVF+
Sbjct: 5   SSKIPLTMALTNIKTRSSMITNILCFLVAL-----FFILLLFLPLSNYSINFPTPISVFI 64

Query: 70  LGNLIVAVLVGESKMFSPKTCDSAVDDDDDCLFDGSFGECSIGEMEDDCDEGERI----D 129
           +GNLIV VL+GESK+F+ K+ D     D+ C +DG+        +  D + G +I    D
Sbjct: 65  IGNLIVVVLIGESKVFASKSSDFFA--DNLCFYDGTL------IVGGDENRGLKICHDDD 124

Query: 130 EWEMSNLGDREELSRRADDFIARVNMQRKIEATILSYGCEWTTMNKKYRRRRI 178
           EWEM  L + E+LS+RADDFIARVNMQR+IEA+IL + CE  T   KYR++ +
Sbjct: 125 EWEM-GLENCEDLSKRADDFIARVNMQREIEASILCFCCELKTTKNKYRKKAL 163

BLAST of MS019913 vs. NCBI nr
Match: KAG7012326.1 (hypothetical protein SDJN02_25078, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-16
Identity = 72/162 (44.44%), Postives = 98/162 (60.49%), Query Frame = 0

Query: 21  NIINNNIIRSFLLSFLTALVSGIFFFISFWILPFLQSSSSTPT-ASVFLLGNLIVAVLVG 80
           NI   + + + +L FL AL     FFI    LP    S + PT  SVF++GNLIV VL+G
Sbjct: 5   NIKTRSSMITNILCFLVAL-----FFILLLFLPLSNYSINFPTPISVFIIGNLIVVVLIG 64

Query: 81  ESKMFSPKTCDSAVDDDDDCLFDGSFGECSIGEMEDDCDEGERI----DEWEMSNLGDRE 140
           ESK+F+ K+ D     D+ C +DG+        +  D + G +I    DEWEM  L + E
Sbjct: 65  ESKVFASKSSDFFA--DNLCFYDGTL------IVGGDENRGLKICHDDDEWEM-GLENCE 124

Query: 141 ELSRRADDFIARVNMQRKIEATILSYGCEWTTMNKKYRRRRI 178
           +LS+RADDFIARVNMQR+IEA+IL + CE  T   KYR++ +
Sbjct: 125 DLSKRADDFIARVNMQREIEASILCFCCELKTTKNKYRKKAL 152

BLAST of MS019913 vs. ExPASy TrEMBL
Match: A0A6J1CA01 (uncharacterized protein LOC111008810 OS=Momordica charantia OX=3673 GN=LOC111008810 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 6.1e-81
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = 0

Query: 18  MGVNIINNNIIRSFLLSFLTALVSGIFFFISFWILPFLQSSSSTPTASVFLLGNLIVAVL 77
           MGVNIINNNII SFLLSFLTALVSGIFFFISFWILPFLQSSS+TPTASVFLLGNLIVAVL
Sbjct: 1   MGVNIINNNIIHSFLLSFLTALVSGIFFFISFWILPFLQSSSNTPTASVFLLGNLIVAVL 60

Query: 78  VGESKMFSPKTCDSAVDDDDDCLFDGSFGECSIGEMEDDCDEGERIDEWEMSNLGDREEL 137
           VGESKMFSPKTCDSAVDDDDDCLFDGSFGECSIGEMEDDCDEGERIDEWEMSNLGDREEL
Sbjct: 61  VGESKMFSPKTCDSAVDDDDDCLFDGSFGECSIGEMEDDCDEGERIDEWEMSNLGDREEL 120

Query: 138 SRRADDFIARVNMQRKIEATILSYGCEWTTMNKKYRRRRI 178
           SRRADDFIARVNMQRKIEATILSYGCEWTTMNKKYRRRRI
Sbjct: 121 SRRADDFIARVNMQRKIEATILSYGCEWTTMNKKYRRRRI 160

BLAST of MS019913 vs. ExPASy TrEMBL
Match: A0A5A7UM42 (Protoheme IX farnesyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004840 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.2e-21
Identity = 79/175 (45.14%), Postives = 103/175 (58.86%), Query Frame = 0

Query: 23  INNNIIRSFLLSFLTALVSGIFFFISFWILPFLQSSSS--------------------TP 82
           +NN II   LLSFLTAL S +      WI+P L  SSS                    TP
Sbjct: 21  VNNIIINILLLSFLTALFSTL-----LWIIPLLLPSSSLLSLFLSSLSHSFNYPINFPTP 80

Query: 83  TASVFLLGNLIVAVLVGESKMFSPKTCDSAVDDDDDCLFDGSFGECSI--GEMEDDCDEG 142
           T  VF+LGNLIV +L+GESK+FS  T D      D C + GSF E S+  G+ +   +  
Sbjct: 81  T-FVFILGNLIVVLLIGESKIFSSTTPDPF--GFDICFYGGSFLETSVSEGDQKRASESF 140

Query: 143 ERIDEWEMSNLGDREELSRRADDFIARVNMQRKIEATILSYGCEWTTMNKKYRRR 176
           +  DEWE+ ++ + EELS+RADDFIARVNMQRKIEA ++ Y C+  T  K+YR++
Sbjct: 141 DEEDEWEIESV-NSEELSKRADDFIARVNMQRKIEAMMVVYCCDMMTTKKRYRKK 186

BLAST of MS019913 vs. ExPASy TrEMBL
Match: A0A1S3BFF3 (uncharacterized protein LOC103489033 OS=Cucumis melo OX=3656 GN=LOC103489033 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.2e-21
Identity = 79/175 (45.14%), Postives = 103/175 (58.86%), Query Frame = 0

Query: 23  INNNIIRSFLLSFLTALVSGIFFFISFWILPFLQSSSS--------------------TP 82
           +NN II   LLSFLTAL S +      WI+P L  SSS                    TP
Sbjct: 21  VNNIIINILLLSFLTALFSTL-----LWIIPLLLPSSSLLSLFLSSLSHSFNYPINFPTP 80

Query: 83  TASVFLLGNLIVAVLVGESKMFSPKTCDSAVDDDDDCLFDGSFGECSI--GEMEDDCDEG 142
           T  VF+LGNLIV +L+GESK+FS  T D      D C + GSF E S+  G+ +   +  
Sbjct: 81  T-FVFILGNLIVVLLIGESKIFSSTTPDPF--GFDICFYGGSFLETSVSEGDQKRASESF 140

Query: 143 ERIDEWEMSNLGDREELSRRADDFIARVNMQRKIEATILSYGCEWTTMNKKYRRR 176
           +  DEWE+ ++ + EELS+RADDFIARVNMQRKIEA ++ Y C+  T  K+YR++
Sbjct: 141 DEEDEWEIESV-NSEELSKRADDFIARVNMQRKIEAMMVVYCCDMMTTKKRYRKK 186

BLAST of MS019913 vs. ExPASy TrEMBL
Match: A0A0A0LWQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051640 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.3e-18
Identity = 78/167 (46.71%), Postives = 100/167 (59.88%), Query Frame = 0

Query: 23  INNNIIRSFLL-SFLTALVSGIFFFISFWILPFLQSSS-----------STPTASVFLLG 82
           +NN II   LL  FLTAL+         WILP   SSS            TPT  VF+LG
Sbjct: 19  VNNIIINILLLCCFLTALL---------WILP---SSSLFHPSNYPINFPTPT-FVFILG 78

Query: 83  NLIVAVLVGESKMFSPKTCDSAVDDDDDCLFDGSFGE--CSIGEMEDDCDEGERIDEWEM 142
           NLIV +L+GESK+FS  T D      D C +DGSF E   S G+ +   +  +  DEWE+
Sbjct: 79  NLIVVLLIGESKVFSSTTPDPF--GFDICFYDGSFRETLVSEGDHKRTSESFDEEDEWEI 138

Query: 143 SNLGDREELSRRADDFIARVNMQRKIEATILSYGCEWTTMNKKYRRR 176
            ++ + EELS+RADDFIARVNMQRKIEA ++ Y C+  TM K+Y ++
Sbjct: 139 ESV-NSEELSKRADDFIARVNMQRKIEAMMVMYCCDMMTMKKRYTKK 169

BLAST of MS019913 vs. ExPASy TrEMBL
Match: A0A540KLX5 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_039234 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.4e-05
Identity = 60/183 (32.79%), Postives = 82/183 (44.81%), Query Frame = 0

Query: 28  IRSFLLSFLTALVSGIFFFISFWILPFLQSSS-----STPTAS--------VFLLGNLIV 87
           + +F L FLTAL   +F F S W+ P   S+      S P  S        VF+LGNLIV
Sbjct: 23  LSNFFLYFLTALTCSLFCFSSLWLPPVSSSTKVFVFVSVPKISSVFLSSKFVFILGNLIV 82

Query: 88  AVLVGESKMFSPKTCDSAVDD--------------------DDDCLFDGSFGE------- 147
             LVG+ K+FS  TC S + D                    +D+ L      E       
Sbjct: 83  VALVGQCKIFSTWTCPSNIGDQYESMKRVQSHHSSSVHQEREDNTLNTRLVEERVVQKRI 142

Query: 148 CS--------------IGEMEDDCDEGERIDEWEMSNLGDREE-LSRRADDFIARVNMQR 156
           CS              +G  E+  +  E +DE +  NL D ++ L++RADDFIARVN +R
Sbjct: 143 CSPCGDLLEAVEEKGLVGGSEEVVEVKEDMDEDDELNLPDEDQKLNQRADDFIARVNERR 202

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022137313.11.3e-8098.75uncharacterized protein LOC111008810 [Momordica charantia][more]
XP_008446247.11.9e-2045.14PREDICTED: uncharacterized protein LOC103489033 [Cucumis melo] >KAA0055346.1 Pro... [more]
XP_011660360.16.8e-1846.71uncharacterized protein LOC105436383 [Cucumis sativus][more]
KAG6573141.19.8e-1743.35hypothetical protein SDJN03_27028, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7012326.12.2e-1644.44hypothetical protein SDJN02_25078, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CA016.1e-8198.75uncharacterized protein LOC111008810 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A5A7UM429.2e-2145.14Protoheme IX farnesyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A1S3BFF39.2e-2145.14uncharacterized protein LOC103489033 OS=Cucumis melo OX=3656 GN=LOC103489033 PE=... [more]
A0A0A0LWQ93.3e-1846.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051640 PE=4 SV=1[more]
A0A540KLX55.4e-0532.79Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_039234 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35762:SF2TRANSMEMBRANE PROTEINcoord: 118..161
coord: 26..95
NoneNo IPR availablePANTHERPTHR35762TRANSMEMBRANE PROTEINcoord: 118..161
coord: 26..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS019913.1MS019913.1mRNA