MS019903 (gene) Bitter gourd (TR) v1

Overview
NameMS019903
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLEA_2 domain-containing protein
Locationscaffold22: 401465 .. 401649 (-)
RNA-Seq ExpressionMS019903
SyntenyMS019903
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAATTGCAGAGCATTACTTCAAAATTCAAGCCGGTTCCGATTTCATCAACGTTGCCACTAACCTGGCCTCAGTAAATTCCACTGTGAAACTCACATTTTGGAACACCGATCATTCTTCAGCGTCGATCTCATATCAATTCCCGTCGATTTCATATACTATAAAATCTCAGTCTCATCAGGAAGC

mRNA sequence

TCAATTGCAGAGCATTACTTCAAAATTCAAGCCGGTTCCGATTTCATCAACGTTGCCACTAACCTGGCCTCAGTAAATTCCACTGTGAAACTCACATTTTGGAACACCTCATTCTTCAGCGTCGATCTCATATCAATTCCCGTCGATTTCATATACTATAAAATCTCAGTCTCATCAGGAAGC

Coding sequence (CDS)

TCAATTGCAGAGCATTACTTCAAAATTCAAGCCGGTTCCGATTTCATCAACGTTGCCACTAACCTGGCCTCAGTAAATTCCACTGTGAAACTCACATTTTGGAACACCTCATTCTTCAGCGTCGATCTCATATCAATTCCCGTCGATTTCATATACTATAAAATCTCAGTCTCATCAGGAAGC

Protein sequence

SIAEHYFKIQAGSDFINVATNLASVNSTVKLTFWNTSFFSVDLISIPVDFIYYKISVSSGS
Homology
[Close]
BLAST of MS019903 vs. NCBI nr
Match: XP_022132311.1 (uncharacterized protein LOC111005194 [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 1.5e-09
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 1   SIAEHYFKIQAGSDFINVATNLASVNSTVKLTFWNT-SFFSVDLISIPVDFIYYKISVSS 60
           SI    FKIQAGSDF  VAT++ASVNSTVKLTF NT SFF V + S PVD  Y +ISV+S
Sbjct: 167 SITFEQFKIQAGSDFTGVATDMASVNSTVKLTFRNTGSFFGVHVTSTPVDLTYSEISVAS 226

Query: 61  GS 62
           GS
Sbjct: 227 GS 228

[Close]
BLAST of MS019903 vs. NCBI nr
Match: XP_023001939.1 (uncharacterized protein LOC111495967 [Cucurbita maxima])

HSP 1 Score: 70.9 bits (172), Expect = 4.4e-09
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1   SIAEHYFKIQAGSDFINVATNLASVNSTVKLTFWNT-SFFSVDLISIPVDFIYYKISVSS 60
           SI  + FK+QAGSDF  VAT++ASVNSTVKLTF NT +FF V + S PVD  Y++IS++S
Sbjct: 165 SIKFNQFKVQAGSDFTGVATDMASVNSTVKLTFRNTGTFFGVHVSSTPVDLTYFEISIAS 224

Query: 61  GS 62
           G+
Sbjct: 225 GA 226

[Close]
BLAST of MS019903 vs. NCBI nr
Match: XP_022951928.1 (uncharacterized protein LOC111454665 [Cucurbita moschata])

HSP 1 Score: 70.9 bits (172), Expect = 4.4e-09
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1   SIAEHYFKIQAGSDFINVATNLASVNSTVKLTFWNT-SFFSVDLISIPVDFIYYKISVSS 60
           SI  + FK+QAGSDF  VAT++ASVNSTVKLTF NT +FF V + S PVD  Y++IS++S
Sbjct: 165 SIRFNQFKVQAGSDFTGVATDMASVNSTVKLTFRNTGTFFGVHVSSTPVDLTYFEISIAS 224

Query: 61  GS 62
           G+
Sbjct: 225 GA 226

[Close]
BLAST of MS019903 vs. NCBI nr
Match: KAG7020578.1 (hypothetical protein SDJN02_17264, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.9 bits (172), Expect = 4.4e-09
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1   SIAEHYFKIQAGSDFINVATNLASVNSTVKLTFWNT-SFFSVDLISIPVDFIYYKISVSS 60
           SI  + FK+QAGSDF  VAT++ASVNSTVKLTF NT +FF V + S PVD  Y++IS++S
Sbjct: 205 SIRFNQFKVQAGSDFTGVATDMASVNSTVKLTFRNTGTFFGVHVSSTPVDLTYFEISIAS 264

Query: 61  GS 62
           G+
Sbjct: 265 GA 266

[Close]
BLAST of MS019903 vs. NCBI nr
Match: KAG6585673.1 (putative serine/threonine-protein kinase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.9 bits (172), Expect = 4.4e-09
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1   SIAEHYFKIQAGSDFINVATNLASVNSTVKLTFWNT-SFFSVDLISIPVDFIYYKISVSS 60
           SI  + FK+QAGSDF  VAT++ASVNSTVKLTF NT +FF V + S PVD  Y++IS++S
Sbjct: 567 SIRFNQFKVQAGSDFTGVATDMASVNSTVKLTFRNTGTFFGVHVSSTPVDLTYFEISIAS 626

Query: 61  GS 62
           G+
Sbjct: 627 GA 628

[Close]
BLAST of MS019903 vs. ExPASy TrEMBL
Match: A0A6J1BRX1 (uncharacterized protein LOC111005194 OS=Momordica charantia OX=3673 GN=LOC111005194 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.4e-10
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 1   SIAEHYFKIQAGSDFINVATNLASVNSTVKLTFWNT-SFFSVDLISIPVDFIYYKISVSS 60
           SI    FKIQAGSDF  VAT++ASVNSTVKLTF NT SFF V + S PVD  Y +ISV+S
Sbjct: 167 SITFEQFKIQAGSDFTGVATDMASVNSTVKLTFRNTGSFFGVHVTSTPVDLTYSEISVAS 226

Query: 61  GS 62
           GS
Sbjct: 227 GS 228

[Close]
BLAST of MS019903 vs. ExPASy TrEMBL
Match: A0A6J1KP12 (uncharacterized protein LOC111495967 OS=Cucurbita maxima OX=3661 GN=LOC111495967 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.1e-09
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1   SIAEHYFKIQAGSDFINVATNLASVNSTVKLTFWNT-SFFSVDLISIPVDFIYYKISVSS 60
           SI  + FK+QAGSDF  VAT++ASVNSTVKLTF NT +FF V + S PVD  Y++IS++S
Sbjct: 165 SIKFNQFKVQAGSDFTGVATDMASVNSTVKLTFRNTGTFFGVHVSSTPVDLTYFEISIAS 224

Query: 61  GS 62
           G+
Sbjct: 225 GA 226

[Close]
BLAST of MS019903 vs. ExPASy TrEMBL
Match: A0A6J1GJ34 (uncharacterized protein LOC111454665 OS=Cucurbita moschata OX=3662 GN=LOC111454665 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.1e-09
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1   SIAEHYFKIQAGSDFINVATNLASVNSTVKLTFWNT-SFFSVDLISIPVDFIYYKISVSS 60
           SI  + FK+QAGSDF  VAT++ASVNSTVKLTF NT +FF V + S PVD  Y++IS++S
Sbjct: 165 SIRFNQFKVQAGSDFTGVATDMASVNSTVKLTFRNTGTFFGVHVSSTPVDLTYFEISIAS 224

Query: 61  GS 62
           G+
Sbjct: 225 GA 226

[Close]
BLAST of MS019903 vs. ExPASy TrEMBL
Match: A0A5A7UYD8 (Late embryogenesis abundant protein, LEA-14 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00450 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.4e-08
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 1   SIAEHYFKIQAGSDFINVATNLASVNSTVKLTFWNT-SFFSVDLISIPVDFIYYKISVSS 60
           SI    FKIQAGSDF  VAT++ASVNSTVKL F NT SFF V + S PVD  Y +I+V+S
Sbjct: 165 SITFEQFKIQAGSDFTGVATDMASVNSTVKLIFRNTGSFFGVHVSSTPVDLTYSEITVAS 224

Query: 61  GS 62
           G+
Sbjct: 225 GT 226

[Close]
BLAST of MS019903 vs. ExPASy TrEMBL
Match: A0A1S3BBJ5 (uncharacterized protein LOC103487879 OS=Cucumis melo OX=3656 GN=LOC103487879 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.4e-08
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 1   SIAEHYFKIQAGSDFINVATNLASVNSTVKLTFWNT-SFFSVDLISIPVDFIYYKISVSS 60
           SI    FKIQAGSDF  VAT++ASVNSTVKL F NT SFF V + S PVD  Y +I+V+S
Sbjct: 165 SITFEQFKIQAGSDFTGVATDMASVNSTVKLIFRNTGSFFGVHVSSTPVDLTYSEITVAS 224

Query: 61  GS 62
           G+
Sbjct: 225 GT 226

[Close]
BLAST of MS019903 vs. TAIR 10
Match: AT1G45688.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 3.2e-05
Identity = 24/62 (38.71%), Postives = 39/62 (62.90%), Query Frame = 0 

Query: 1   SIAEHYFKIQAGSDFINVATNLASVNSTVKLTFWNT-SFFSVDLISIPVDFIYYKISVSS 60
           SI     KIQAG D   V T++ ++N+T+++ + NT +FF V + S P+D  + +I + S
Sbjct: 164 SITFETLKIQAGQDAGGVGTDMITMNATLRMLYRNTGTFFGVHVTSTPIDLSFSQIKIGS 223

Query: 61  GS 62
           GS
Sbjct: 224 GS 225

[Close]
BLAST of MS019903 vs. TAIR 10
Match: AT1G45688.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 3.2e-05
Identity = 24/62 (38.71%), Postives = 39/62 (62.90%), Query Frame = 0 

Query: 1   SIAEHYFKIQAGSDFINVATNLASVNSTVKLTFWNT-SFFSVDLISIPVDFIYYKISVSS 60
           SI     KIQAG D   V T++ ++N+T+++ + NT +FF V + S P+D  + +I + S
Sbjct: 164 SITFETLKIQAGQDAGGVGTDMITMNATLRMLYRNTGTFFGVHVTSTPIDLSFSQIKIGS 223

Query: 61  GS 62
           GS
Sbjct: 224 GS 225

[Close]
BLAST of MS019903 vs. TAIR 10
Match: AT5G42860.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45688.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 4.1e-05
Identity = 22/62 (35.48%), Postives = 40/62 (64.52%), Query Frame = 0 

Query: 1   SIAEHYFKIQAGSDFINVATNLASVNSTVKLTFWNT-SFFSVDLISIPVDFIYYKISVSS 60
           SI     K+QAG D   + T++ ++N+T+++ + NT +FF V + S P+D  + +I++ S
Sbjct: 143 SITFEQLKVQAGQDAGGIGTDMITMNATLRMLYRNTGTFFGVHVTSSPIDLSFSQITIGS 202

Query: 61  GS 62
           GS
Sbjct: 203 GS 204

The following BLAST results are available for this feature:
BLAST of MS019903 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022132311.11.5e-0967.74uncharacterized protein LOC111005194 [Momordica charantia][more]
XP_023001939.14.4e-0961.29uncharacterized protein LOC111495967 [Cucurbita maxima][more]
XP_022951928.14.4e-0961.29uncharacterized protein LOC111454665 [Cucurbita moschata][more]
KAG7020578.14.4e-0961.29hypothetical protein SDJN02_17264, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6585673.14.4e-0961.29putative serine/threonine-protein kinase, partial [Cucurbita argyrosperma subsp.... [more]
BLAST of MS019903 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS019903 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BRX17.4e-1067.74uncharacterized protein LOC111005194 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A6J1KP122.1e-0961.29uncharacterized protein LOC111495967 OS=Cucurbita maxima OX=3661 GN=LOC111495967... [more]
A0A6J1GJ342.1e-0961.29uncharacterized protein LOC111454665 OS=Cucurbita moschata OX=3662 GN=LOC1114546... [more]
A0A5A7UYD82.4e-0862.90Late embryogenesis abundant protein, LEA-14 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BBJ52.4e-0862.90uncharacterized protein LOC103487879 OS=Cucumis melo OX=3656 GN=LOC103487879 PE=... [more]
BLAST of MS019903 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G45688.23.2e-0538.71unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G45688.13.2e-0538.71unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G42860.14.1e-0535.48unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS019903.1MS019903.1mRNA