MS019807 (gene) Bitter gourd (TR) v1

Overview


Name	MS019807
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	U6 snRNA-associated Sm-like protein LSm8
Location	scaffold266: 39171 .. 40233 (+)
RNA-Seq Expression	MS019807
Synteny	MS019807

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCAGGGGGTGTTGAAAGGATTTGACCAGGCTACAAATATTATCCTTGATGAATCTCATGAGCGTGTTTACTCAACCAAGGTTTGTGTAATTACCATATAGCTGGAGTTTTCTACTTTCTACTACTCTTTCATCGATTGTTAGTTTAGACAGAAAGAACTCTTTCAATCTGTAGAGAATTCATATAGTTCATTTTCTGCTCTCTGTGGTTCTTCTGTTCTTATGTTATTTCATCTATTTGTGGATGTGTTTAAATGTTTCTTTAGAAAAATTTCTTCTGCATATATTATTTTGAATGTTTAATCAGTTACACCTAGCTCTTTTTCCTTGTGGGGGATTGCTATTTGTATTTCTTATCCCTTGAAAACTTGTTTAGTAGGAAAGTGGAGGATCTCAGTTTTCCCCTCATTAACAGAGAATAAAATATCTTTCCTTCTTTCTTATACTTACTGGTGCTGAGCAGACCTTTGAGTTTTGACCATGATATCTGCTTCTGCTACTGTCTCTCTGTTTTTGTCCAAATCTCTAAAATACATAGCTGAATGTTATTTATGTCTTCCGTTTATATTTAAAAATTAGAAGCATGAGCATACTTTGGTTAAACAAGGGGCGGGGAACGGGGACCCGCGGGAAAAAATGACATCTCTACATGAGATTTGGGTCACTTGAATCTCAAATCTCACAATTTCTGAATTTGATGGCTTTCAAGAGATTTAAGATTATGCATTTGTGGTTTGAATCCCATTTTCATATCTCAATGCTTTCTCTTGATCTGCAGGAAGGCGTTCAGCAACTTGTATTGGGTCTATATATAATCCGAGGCGACAATATGTAACTACCATCTCACTTTTTGTTTCCTCCATGTACATAATGAAAACTTCACTCTCGATTGTATGAGAATTTTTATGAAAGATGCACACAGAACGGAGAAACTTCGTAGTTATTGAAATTCATAATGGGTCTTAATTTTTGCAGAAGCATTGTTGGGGAGCTAGATGAGGAACTTGATTCTAATCTCGACTTGTCAAAATTGCGAGCTCATCCTCTGAAGCCTGTGATTCAT

mRNA sequence

ATTCAGGGGGTGTTGAAAGGATTTGACCAGGCTACAAATATTATCCTTGATGAATCTCATGAGCGTGTTTACTCAACCAAGGAAGGCGTTCAGCAACTTGTATTGGGTCTATATATAATCCGAGGCGACAATATAAGCATTGTTGGGGAGCTAGATGAGGAACTTGATTCTAATCTCGACTTGTCAAAATTGCGAGCTCATCCTCTGAAGCCTGTGATTCAT

Coding sequence (CDS)

ATTCAGGGGGTGTTGAAAGGATTTGACCAGGCTACAAATATTATCCTTGATGAATCTCATGAGCGTGTTTACTCAACCAAGGAAGGCGTTCAGCAACTTGTATTGGGTCTATATATAATCCGAGGCGACAATATAAGCATTGTTGGGGAGCTAGATGAGGAACTTGATTCTAATCTCGACTTGTCAAAATTGCGAGCTCATCCTCTGAAGCCTGTGATTCAT

Protein sequence

IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH

Homology

[Close]

BLAST of MS019807 vs. NCBI nr
Match: KAF8398634.1 (hypothetical protein HHK36_014489 [Tetracentron sinense])

HSP 1 Score: 147.1 bits (370), Expect = 5.9e-32
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1   IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 60
           I GVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD
Sbjct: 70  IVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 129

Query: 61  LSKLRAHPLKPVIH 75
           LSKLRAHPLKPVIH
Sbjct: 130 LSKLRAHPLKPVIH 143

[Close]

BLAST of MS019807 vs. NCBI nr
Match: KAB1227682.1 (U6 snRNA-associated Sm-like protein LSm8 [Morella rubra])

HSP 1 Score: 147.1 bits (370), Expect = 5.9e-32
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 60
          I GVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD
Sbjct: 25 IVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 84

Query: 61 LSKLRAHPLKPVIH 75
          LSKLRAHPLKPVIH
Sbjct: 85 LSKLRAHPLKPVIH 98

[Close]

BLAST of MS019807 vs. NCBI nr
Match: KAA8542646.1 (hypothetical protein F0562_023855 [Nyssa sinensis])

HSP 1 Score: 147.1 bits (370), Expect = 5.9e-32
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1   IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 60
           I GVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD
Sbjct: 107 IVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 166

Query: 61  LSKLRAHPLKPVIH 75
           LSKLRAHPLKPVIH
Sbjct: 167 LSKLRAHPLKPVIH 180

[Close]

BLAST of MS019807 vs. NCBI nr
Match: XP_022155134.1 (sm-like protein LSM8 [Momordica charantia] >XP_022955136.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955137.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955138.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955139.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955140.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022994688.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994689.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994690.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994691.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994692.1 sm-like protein LSM8 [Cucurbita maxima] >XP_023541242.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541244.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541245.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541246.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_038893733.1 sm-like protein LSM8 isoform X1 [Benincasa hispida] >XP_038893734.1 sm-like protein LSM8 isoform X1 [Benincasa hispida] >XP_038893735.1 sm-like protein LSM8 isoform X1 [Benincasa hispida] >KAG6573000.1 Sm-like protein LSM8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012184.1 Sm-like protein LSM8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.1 bits (370), Expect = 5.9e-32
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 60
          I GVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD
Sbjct: 25 IVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 84

Query: 61 LSKLRAHPLKPVIH 75
          LSKLRAHPLKPVIH
Sbjct: 85 LSKLRAHPLKPVIH 98

[Close]

BLAST of MS019807 vs. NCBI nr
Match: KAA8547639.1 (hypothetical protein F0562_004068 [Nyssa sinensis])

HSP 1 Score: 147.1 bits (370), Expect = 5.9e-32
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 60
          I GVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD
Sbjct: 25 IVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 84

Query: 61 LSKLRAHPLKPVIH 75
          LSKLRAHPLKPVIH
Sbjct: 85 LSKLRAHPLKPVIH 98

[Close]

BLAST of MS019807 vs. ExPASy Swiss-Prot
Match: Q8VYI0 (Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.3e-31
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 60
          I GVLKGFDQATNIILDESHERV+STKEGVQQ VLGLYIIRGDNI ++GELDEELD++LD
Sbjct: 25 IVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVIGELDEELDASLD 84

Query: 61 LSKLRAHPLKPVIH 75
           SKLRAHPLKPV+H
Sbjct: 85 FSKLRAHPLKPVVH 98

[Close]

BLAST of MS019807 vs. ExPASy Swiss-Prot
Match: Q3ZCE0 (U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-23
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1  IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 60
          I G LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++++GE+DEE DS LD
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALD 82

Query: 61 LSKLRAHPLKPVIH 75
          L  +RA PL  V H
Sbjct: 83 LGNIRAEPLNSVAH 96

[Close]

BLAST of MS019807 vs. ExPASy Swiss-Prot
Match: O95777 (U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV=3)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-23
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1  IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 60
          I G LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++++GE+DEE DS LD
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALD 82

Query: 61 LSKLRAHPLKPVIH 75
          L  +RA PL  V H
Sbjct: 83 LGNIRAEPLNSVAH 96

[Close]

BLAST of MS019807 vs. ExPASy Swiss-Prot
Match: Q6ZWM4 (U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 SV=3)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-23
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1  IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 60
          I G LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++++GE+DEE DS LD
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALD 82

Query: 61 LSKLRAHPLKPVIH 75
          L  +RA PL  V H
Sbjct: 83 LGNIRAEPLNSVAH 96

[Close]

BLAST of MS019807 vs. ExPASy Swiss-Prot
Match: Q5RCP3 (U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-23
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1  IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 60
          I G LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++++GE+DEE DS LD
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALD 82

Query: 61 LSKLRAHPLKPVIH 75
          L  +RA PL  V H
Sbjct: 83 LGNIRAEPLNSVAH 96

[Close]

BLAST of MS019807 vs. ExPASy TrEMBL
Match: A0A6J1K221 (U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita maxima OX=3661 GN=LOC111490340 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.8e-32
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 60
          I GVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD
Sbjct: 25 IVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 84

Query: 61 LSKLRAHPLKPVIH 75
          LSKLRAHPLKPVIH
Sbjct: 85 LSKLRAHPLKPVIH 98

[Close]

BLAST of MS019807 vs. ExPASy TrEMBL
Match: A0A1S3ATI1 (U6 snRNA-associated Sm-like protein LSm8 OS=Cucumis melo OX=3656 GN=LOC103482675 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.8e-32
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 60
          I GVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD
Sbjct: 25 IVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 84

Query: 61 LSKLRAHPLKPVIH 75
          LSKLRAHPLKPVIH
Sbjct: 85 LSKLRAHPLKPVIH 98

[Close]

BLAST of MS019807 vs. ExPASy TrEMBL
Match: A0A6J1GT46 (U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita moschata OX=3662 GN=LOC111457194 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.8e-32
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 60
          I GVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD
Sbjct: 25 IVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 84

Query: 61 LSKLRAHPLKPVIH 75
          LSKLRAHPLKPVIH
Sbjct: 85 LSKLRAHPLKPVIH 98

[Close]

BLAST of MS019807 vs. ExPASy TrEMBL
Match: A0A6A1WQX6 (U6 snRNA-associated Sm-like protein LSm8 OS=Morella rubra OX=262757 GN=LSM8 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.8e-32
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 60
          I GVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD
Sbjct: 25 IVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 84

Query: 61 LSKLRAHPLKPVIH 75
          LSKLRAHPLKPVIH
Sbjct: 85 LSKLRAHPLKPVIH 98

[Close]

BLAST of MS019807 vs. ExPASy TrEMBL
Match: A0A0A0LT86 (U6 snRNA-associated Sm-like protein LSm8 OS=Cucumis sativus OX=3659 GN=LSM8 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.8e-32
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 60
          I GVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD
Sbjct: 25 IVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 84

Query: 61 LSKLRAHPLKPVIH 75
          LSKLRAHPLKPVIH
Sbjct: 85 LSKLRAHPLKPVIH 98

[Close]

BLAST of MS019807 vs. TAIR 10
Match: AT1G65700.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 135.6 bits (340), Expect = 1.7e-32
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 60
          I GVLKGFDQATNIILDESHERV+STKEGVQQ VLGLYIIRGDNI ++GELDEELD++LD
Sbjct: 25 IVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVIGELDEELDASLD 84

Query: 61 LSKLRAHPLKPVIH 75
           SKLRAHPLKPV+H
Sbjct: 85 FSKLRAHPLKPVVH 98

[Close]

BLAST of MS019807 vs. TAIR 10
Match: AT1G65700.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 135.6 bits (340), Expect = 1.7e-32
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLD 60
          I GVLKGFDQATNIILDESHERV+STKEGVQQ VLGLYIIRGDNI ++GELDEELD++LD
Sbjct: 25 IVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVIGELDEELDASLD 84

Query: 61 LSKLRAHPLKPVIH 75
           SKLRAHPLKPV+H
Sbjct: 85 FSKLRAHPLKPVVH 98

[Close]

BLAST of MS019807 vs. TAIR 10
Match: AT1G65700.3 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 114.8 bits (286), Expect = 3.0e-26
Identity = 64/117 (54.70%), Postives = 70/117 (59.83%), Query Frame = 0


Query: 1   IQGVLKGFDQATNIILDESHERVYSTK--------------------------------- 60
           I GVLKGFDQATNIILDESHERV+STK                                 
Sbjct: 25  IVGVLKGFDQATNIILDESHERVFSTKCHLFNRILRKLTQIFKIGLVLQFFVCMSGHVDT 84

Query: 61  ----------EGVQQLVLGLYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 75
                     EGVQQ VLGLYIIRGDNI ++GELDEELD++LD SKLRAHPLKPV+H
Sbjct: 85  SLDKCSWIFLEGVQQHVLGLYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 141

[Close]

BLAST of MS019807 vs. TAIR 10
Match: AT1G19120.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 53.5 bits (127), Expect = 8.2e-08
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1  IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEE 55
          + G+L+ FDQ  N +L+E++ERV    +    + LGLYIIRG+N+ ++GELD E
Sbjct: 33 LMGLLRSFDQFANAVLEEAYERVI-VGDLYCDIPLGLYIIRGENVVLIGELDVE 85

[Close]

BLAST of MS019807 vs. TAIR 10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 50.4 bits (119), Expect = 7.0e-07
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 1  IQGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEE 55
          + G L+ FDQ  N +L+ + ERV    E    + LGLY+IRG+N+ ++GELD E
Sbjct: 33 LMGTLRSFDQFANAVLEGACERVI-VGEQYCDIPLGLYVIRGENVVLIGELDTE 85

The following BLAST results are available for this feature:

BLAST of MS019807 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF8398634.1	5.9e-32	98.65	hypothetical protein HHK36_014489 [Tetracentron sinense]	[more]
KAB1227682.1	5.9e-32	98.65	U6 snRNA-associated Sm-like protein LSm8 [Morella rubra]	[more]
KAA8542646.1	5.9e-32	98.65	hypothetical protein F0562_023855 [Nyssa sinensis]	[more]
XP_022155134.1	5.9e-32	98.65	sm-like protein LSM8 [Momordica charantia] >XP_022955136.1 sm-like protein LSM8 ...	[more]
KAA8547639.1	5.9e-32	98.65	hypothetical protein F0562_004068 [Nyssa sinensis]	[more]

BLAST of MS019807 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYI0	2.3e-31	86.49	Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1	[more]
Q3ZCE0	1.4e-23	64.86	U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3	[more]
O95777	1.4e-23	64.86	U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV...	[more]
Q6ZWM4	1.4e-23	64.86	U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 S...	[more]
Q5RCP3	1.4e-23	64.86	U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV...	[more]

BLAST of MS019807 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K221	2.8e-32	98.65	U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A1S3ATI1	2.8e-32	98.65	U6 snRNA-associated Sm-like protein LSm8 OS=Cucumis melo OX=3656 GN=LOC103482675...	[more]
A0A6J1GT46	2.8e-32	98.65	U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6A1WQX6	2.8e-32	98.65	U6 snRNA-associated Sm-like protein LSm8 OS=Morella rubra OX=262757 GN=LSM8 PE=3...	[more]
A0A0A0LT86	2.8e-32	98.65	U6 snRNA-associated Sm-like protein LSm8 OS=Cucumis sativus OX=3659 GN=LSM8 PE=3...	[more]

BLAST of MS019807 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G65700.1	1.7e-32	86.49	Small nuclear ribonucleoprotein family protein	[more]
AT1G65700.2	1.7e-32	86.49	Small nuclear ribonucleoprotein family protein	[more]
AT1G65700.3	3.0e-26	54.70	Small nuclear ribonucleoprotein family protein	[more]
AT1G19120.1	8.2e-08	46.30	Small nuclear ribonucleoprotein family protein	[more]
AT3G14080.1	7.0e-07	44.44	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 1..49 e-value: 2.3E-11 score: 43.2
None	No IPR available	GENE3D	2.30.30.100		coord: 1..73 e-value: 1.7E-18 score: 68.5
None	No IPR available	PANTHER	PTHR15588:SF9	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8	coord: 1..74
IPR044642	U6 snRNA-associated Sm-like protein Lsm1/8	PANTHER	PTHR15588	LSM1	coord: 1..74
IPR034103	Sm-like protein Lsm8	CDD	cd01727	LSm8	coord: 1..70 e-value: 5.77568E-36 score: 114.545
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019807.1	MS019807.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP