MS019753 (gene) Bitter gourd (TR) v1

Overview


Name	MS019753
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	light-harvesting complex-like protein OHP1, chloroplastic
Location	scaffold729: 1952142 .. 1952728 (-)
RNA-Seq Expression	MS019753
Synteny	MS019753

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTTCCTCTGCGATGTTATCATCTTCTCTTCTTCCGGCCAGAGCTCCGACTGGTAACCGTCAAGACGGCCGACTCTGTCTCTTTCAAATTGGTTCAGTCCGTGCCAACAACAGCAGGGCTCGTGTCCCTTTTAGGGTTCAGGCCGCAAAGCTTCCGGCTGGAGTACACTGTCTATCCTCTTCAAATTTGTGAACTTTTCCCATTTCTGTTTCGCCTGTTGATAACTTTGTTTCCATCTGAAAAGCTTAGATAAATTCAGAATAATAAATTCATGTGGGCTAGCGAGTTACCTTTTTCTTTTCTTTTTCCAAGGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCCAGAGCCTGCATGATAGGCCTCGTTGGGATTTTCATAGTAGAGCTGGTGAGTTTCCCGTTAGGTTTCTATCTTTTACTTCTATATTCAAATTAGTGGGTTCTATTCATTTTTGTCTGATTTTTCAGATTTTGAACAAAGGAATACTTCAGGTGATTGGAGTTGATGTTGGTAAAGGCCTAGATCTTCCTCTA

mRNA sequence

ATGGCGTCTTCCTCTGCGATGTTATCATCTTCTCTTCTTCCGGCCAGAGCTCCGACTGGTAACCGTCAAGACGGCCGACTCTGTCTCTTTCAAATTGGTTCAGTCCGTGCCAACAACAGCAGGGCTCGTGTCCCTTTTAGGGTTCAGGCCGCAAAGCTTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCCAGAGCCTGCATGATAGGCCTCGTTGGGATTTTCATAGTAGAGCTGATTTTGAACAAAGGAATACTTCAGGTGATTGGAGTTGATGTTGGTAAAGGCCTAGATCTTCCTCTA

Coding sequence (CDS)

ATGGCGTCTTCCTCTGCGATGTTATCATCTTCTCTTCTTCCGGCCAGAGCTCCGACTGGTAACCGTCAAGACGGCCGACTCTGTCTCTTTCAAATTGGTTCAGTCCGTGCCAACAACAGCAGGGCTCGTGTCCCTTTTAGGGTTCAGGCCGCAAAGCTTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCCAGAGCCTGCATGATAGGCCTCGTTGGGATTTTCATAGTAGAGCTGATTTTGAACAAAGGAATACTTCAGGTGATTGGAGTTGATGTTGGTAAAGGCCTAGATCTTCCTCTA

Protein sequence

MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLVGIFIVELILNKGILQVIGVDVGKGLDLPL

Homology

[Close]

BLAST of MS019753 vs. NCBI nr
Match: XP_022145630.1 (light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia])

HSP 1 Score: 226.5 bits (576), Expect = 1.2e-55
Identity = 117/119 (98.32%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60
           MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLVGIFIVELILNKGILQVIGVDVGKGLDLPL 120
           KVEPKFEAPFLGFTKTAEIWNSRACM+GLVGIFIVELIL+KGILQVIGVDVGKGLDLPL
Sbjct: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 119

[Close]

BLAST of MS019753 vs. NCBI nr
Match: XP_038905156.1 (light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida])

HSP 1 Score: 213.8 bits (543), Expect = 8.2e-52
Identity = 109/119 (91.60%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60
           MASSSA+LSSSLLPARAP  ++QDGRLCLFQIGSVRANNSR+RVPFRVQAAK PAGVELP
Sbjct: 1   MASSSAILSSSLLPARAPICSQQDGRLCLFQIGSVRANNSRSRVPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLVGIFIVELILNKGILQVIGVDVGKGLDLPL 120
           KVEPKFEAPFLGFTKTAE+WNSRACMIGL+GIF+VELILNKGILQVIGVDVGKGLDLPL
Sbjct: 61  KVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 119

[Close]

BLAST of MS019753 vs. NCBI nr
Match: XP_022934608.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >XP_022983997.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita maxima] >KAG6580528.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017279.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.9 bits (520), Expect = 3.8e-49
Identity = 104/119 (87.39%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60
           MASS+ +LSSSLLPARAP  +RQDGRLCLFQ+GSVRANN RAR PFRVQAAK PAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLVGIFIVELILNKGILQVIGVDVGKGLDLPL 120
           KV+PKFEAPFLGFTKTAEIWNSRA MIGL+GIF+VELILNKGILQVIGVD+GKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

[Close]

BLAST of MS019753 vs. NCBI nr
Match: XP_023526506.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.6 bits (514), Expect = 1.9e-48
Identity = 103/119 (86.55%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60
           MASS+ +LSSSLLPA AP  +RQDGRLCLFQ+GSVRANN RAR PFRVQAAK PAGVELP
Sbjct: 1   MASSATILSSSLLPASAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLVGIFIVELILNKGILQVIGVDVGKGLDLPL 120
           KV+PKFEAPFLGFTKTAEIWNSRA MIGL+GIF+VELILNKGILQVIGVD+GKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

[Close]

BLAST of MS019753 vs. NCBI nr
Match: XP_004137791.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN58853.1 hypothetical protein Csa_001588 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 1.6e-42
Identity = 102/121 (84.30%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIG-SVRANNSRARVPFRVQ-AAKLPAGVE 60
           MASSS +L SSL PARA T N QD R CLFQIG SVRAN+SRAR  FR+Q AAK PAGVE
Sbjct: 1   MASSSVIL-SSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLVGIFIVELILNKGILQVIGVDVGKGLDLP 120
           LPKVEPKF+APFLGFTKTAEIWNSRACMIGL+GIF+VELILNKGILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120

[Close]

BLAST of MS019753 vs. ExPASy Swiss-Prot
Match: O81208 (Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OHP1 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 9.5e-27
Identity = 69/119 (57.98%), Postives = 83/119 (69.75%), Query Frame = 0


Query: 4   SSAMLSSSLLPARAPTGNRQDGR---LCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 63
           SS+ LSSSL    +       GR   LC           +R + PF V+AAKLP GV +P
Sbjct: 2   SSSPLSSSLFHPLSTLSTHCHGRRQNLCF----------NRKQQPFVVRAAKLPEGVIVP 61

Query: 64  KVEPKFEAPFLGFTKTAEIWNSRACMIGLVGIFIVELILNKGILQVIGVDVGKGLDLPL 120
           K +PK +  FLGFT+TAEIWNSRACMIGL+G FIVELILNKGIL++IGV++GKGLDLPL
Sbjct: 62  KAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILELIGVEIGKGLDLPL 110

[Close]

BLAST of MS019753 vs. ExPASy TrEMBL
Match: A0A6J1CV10 (light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015030 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 5.9e-56
Identity = 117/119 (98.32%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60
           MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLVGIFIVELILNKGILQVIGVDVGKGLDLPL 120
           KVEPKFEAPFLGFTKTAEIWNSRACM+GLVGIFIVELIL+KGILQVIGVDVGKGLDLPL
Sbjct: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 119

[Close]

BLAST of MS019753 vs. ExPASy TrEMBL
Match: A0A6J1J0W8 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482448 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.9e-49
Identity = 104/119 (87.39%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60
           MASS+ +LSSSLLPARAP  +RQDGRLCLFQ+GSVRANN RAR PFRVQAAK PAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLVGIFIVELILNKGILQVIGVDVGKGLDLPL 120
           KV+PKFEAPFLGFTKTAEIWNSRA MIGL+GIF+VELILNKGILQVIGVD+GKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

[Close]

BLAST of MS019753 vs. ExPASy TrEMBL
Match: A0A6J1F851 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441742 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.9e-49
Identity = 104/119 (87.39%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60
           MASS+ +LSSSLLPARAP  +RQDGRLCLFQ+GSVRANN RAR PFRVQAAK PAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLVGIFIVELILNKGILQVIGVDVGKGLDLPL 120
           KV+PKFEAPFLGFTKTAEIWNSRA MIGL+GIF+VELILNKGILQVIGVD+GKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

[Close]

BLAST of MS019753 vs. ExPASy TrEMBL
Match: A0A0A0LAI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.5e-43
Identity = 102/121 (84.30%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIG-SVRANNSRARVPFRVQ-AAKLPAGVE 60
           MASSS +L SSL PARA T N QD R CLFQIG SVRAN+SRAR  FR+Q AAK PAGVE
Sbjct: 1   MASSSVIL-SSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLVGIFIVELILNKGILQVIGVDVGKGLDLP 120
           LPKVEPKF+APFLGFTKTAEIWNSRACMIGL+GIF+VELILNKGILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120

[Close]

BLAST of MS019753 vs. ExPASy TrEMBL
Match: A0A5A7TRS8 (High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001530 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.3e-42
Identity = 103/121 (85.12%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIG-SVRANNSRARVPFRVQ-AAKLPAGVE 60
           MASSS +L SSL PARA T N+QDGR  LFQIG SVRANNSRAR  FRVQ AAK PAGVE
Sbjct: 1   MASSSVIL-SSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLVGIFIVELILNKGILQVIGVDVGKGLDLP 120
           LPKVEPKFEAPFLGFTKTAEIWNSRACMIGL+G F+VELILNK ILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120

[Close]

BLAST of MS019753 vs. TAIR 10
Match: AT5G02120.1 (one helix protein )

HSP 1 Score: 120.9 bits (302), Expect = 6.8e-28
Identity = 69/119 (57.98%), Postives = 83/119 (69.75%), Query Frame = 0


Query: 4   SSAMLSSSLLPARAPTGNRQDGR---LCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 63
           SS+ LSSSL    +       GR   LC           +R + PF V+AAKLP GV +P
Sbjct: 2   SSSPLSSSLFHPLSTLSTHCHGRRQNLCF----------NRKQQPFVVRAAKLPEGVIVP 61

Query: 64  KVEPKFEAPFLGFTKTAEIWNSRACMIGLVGIFIVELILNKGILQVIGVDVGKGLDLPL 120
           K +PK +  FLGFT+TAEIWNSRACMIGL+G FIVELILNKGIL++IGV++GKGLDLPL
Sbjct: 62  KAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILELIGVEIGKGLDLPL 110

The following BLAST results are available for this feature:

BLAST of MS019753 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145630.1	1.2e-55	98.32	light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia]	[more]
XP_038905156.1	8.2e-52	91.60	light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida]	[more]
XP_022934608.1	3.8e-49	87.39	light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >...	[more]
XP_023526506.1	1.9e-48	86.55	light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp....	[more]
XP_004137791.1	1.6e-42	84.30	light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN...	[more]

BLAST of MS019753 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81208	9.5e-27	57.98	Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of MS019753 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CV10	5.9e-56	98.32	light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia...	[more]
A0A6J1J0W8	1.9e-49	87.39	light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX...	[more]
A0A6J1F851	1.9e-49	87.39	light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita moschata ...	[more]
A0A0A0LAI0	7.5e-43	84.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1	[more]
A0A5A7TRS8	8.3e-42	85.12	High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of MS019753 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02120.1	6.8e-28	57.98	one helix protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 1..116
None	No IPR available	PANTHER	PTHR14154:SF51	LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP1, CHLOROPLASTIC	coord: 1..116
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 59..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019753.1	MS019753.1	mRNA