MS019740 (gene) Bitter gourd (TR) v1

Overview


Name	MS019740
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DUF868 domain-containing protein
Location	scaffold729: 1888258 .. 1888480 (-)
RNA-Seq Expression	MS019740
Synteny	MS019740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATTCTTTGATGATAACAACGTCCACAAAATTTTGGTGAAGGGCAGCGAAAAGAAAACAGAGGGTAGGGAGATGTGGAATCATACGTTACTAGTGCTTAGGGATCAAAATAAAGTGTTCAAGGTCAATAGATTGAGGTCAAATATTCACAAGAACCAAACGATTTTTTTTGGATCGGTCGATGGAAAATATGATGTGGGATGTTTATGAGTGGTTTTTCAAG

mRNA sequence

AGATTCTTTGATGATAACAACGTCCACAAAATTTTGGTGAAGGGCAGCGAAAAGAAAACAGAGGGTAGGGAGATGTGGAATCATACGTTACTAGTGCTTAGGGATCAAAATAAAGTGTTCAAGGTCAATAGATTGAGGTCAAATATTCACAAGAACCAAACGATTTTTGATCGGTCGATGGAAAATATGATGTGGGATGTTTATGAGTGGTTTTTCAAG

Coding sequence (CDS)

AGATTCTTTGATGATAACAACGTCCACAAAATTTTGGTGAAGGGCAGCGAAAAGAAAACAGAGGGTAGGGAGATGTGGAATCATACGTTACTAGTGCTTAGGGATCAAAATAAAGTGTTCAAGGTCAATAGATTGAGGTCAAATATTCACAAGAACCAAACGATTTTTGATCGGTCGATGGAAAATATGATGTGGGATGTTTATGAGTGGTTTTTCAAG

Protein sequence

RFFDDNNVHKILVKGSEKKTEGREMWNHTLLVLRDQNKVFKVNRLRSNIHKNQTIFDRSMENMMWDVYEWFFK

Homology

[Close]

BLAST of MS019740 vs. NCBI nr
Match: XP_038904409.1 (uncharacterized protein LOC120090773 [Benincasa hispida])

HSP 1 Score: 67.8 bits (164), Expect = 4.5e-08
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 1   RFFDDNNVHKILVKGSEKKTEGREMWNHTLLVLRDQNKVFKVNRLRSNIHKNQTIF-DRS 60
           RF DD  +H+ILVK       G EM N  L V  D+ ++F+V RL+ N   NQTIF D S
Sbjct: 183 RFSDDGGLHEILVKCG----GGEEMRNQRLAVFIDKKQIFEVKRLKWNFRGNQTIFLDGS 242

Query: 61  MENMMWDVYEWFFK 74
           + +MMWDVYEW F+
Sbjct: 243 VVDMMWDVYEWLFR 252

[Close]

BLAST of MS019740 vs. NCBI nr
Match: XP_008442802.1 (PREDICTED: uncharacterized protein LOC103486576 [Cucumis melo] >KAA0043914.1 uncharacterized protein E6C27_scaffold236G002540 [Cucumis melo var. makuwa] >TYK25223.1 uncharacterized protein E5676_scaffold352G003530 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 7.6e-08
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 1   RFFDDNNVHKILVKGSEKKTEGREMWNHTLLVLRDQNKVFKVNRLRSNIHKNQTIF-DRS 60
           RF DD  VH+I+VK       G EM N  L V  D+ +VF+V RL+ N   NQTIF D S
Sbjct: 180 RFSDDGGVHEIVVKCG----GGEEMRNQRLAVFIDKKQVFEVKRLKWNFRGNQTIFLDGS 239

Query: 61  MENMMWDVYEWFFK 74
           + +MMWDVY+W F+
Sbjct: 240 VVDMMWDVYDWLFR 249

[Close]

BLAST of MS019740 vs. NCBI nr
Match: XP_004138008.2 (uncharacterized protein LOC101203134 [Cucumis sativus] >KAE8651077.1 hypothetical protein Csa_002133 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 2.9e-07
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 1   RFFDDNNVHKILVKGSEKKTEGREMWNHTLLVLRDQNKVFKVNRLRSNIHKNQTIF-DRS 60
           RF D+  VH+I+VK       G EM N  L V  D+ +VF+V RL+ N   NQTIF D S
Sbjct: 264 RFSDEGGVHEIVVKCG---GGGEEMRNQRLAVFIDKKQVFEVKRLKWNFRGNQTIFLDGS 323

Query: 61  MENMMWDVYEWFFK 74
           + +MMWDVY+W F+
Sbjct: 324 VVDMMWDVYDWLFR 334

[Close]

BLAST of MS019740 vs. NCBI nr
Match: XP_023528798.1 (uncharacterized protein LOC111791624 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.5 bits (153), Expect = 8.4e-07
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 1   RFFDDNNVHKILVKGSEKKTEGREMWNHTLLVLRDQNKVFKVNRLRSNIHKNQTIF-DRS 60
           RF D   +H+I V  S     G+E+ N  L+VL D+ +VF+V RLR N   NQTIF D S
Sbjct: 180 RFSDSGILHEISVSCS----GGKELNNQRLVVLIDKKQVFEVKRLRWNFRGNQTIFLDGS 239

Query: 61  MENMMWDVYEWFFK 74
           + +MMWDVY+W F+
Sbjct: 240 VVDMMWDVYDWLFR 249

[Close]

BLAST of MS019740 vs. NCBI nr
Match: XP_031275483.1 (uncharacterized protein LOC116133961 [Pistacia vera])

HSP 1 Score: 63.5 bits (153), Expect = 8.4e-07
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 1   RFFDDNNVHKILVKGSEKKTEGREMWNHTLLVLRDQNKVFKVNRLRSNIHKNQTIF-DRS 60
           +F D  N H+IL+K   +K   R   N  L V  D+ K+F+V RLR N   NQTIF D  
Sbjct: 186 KFCDSGNAHEILIKCMGEKEGSRN--NPVLSVSIDEKKIFQVKRLRWNFRGNQTIFLDDL 245

Query: 61  MENMMWDVYEWFFK 74
           + +MMWDV++WFFK
Sbjct: 246 LVDMMWDVHDWFFK 257

[Close]

BLAST of MS019740 vs. ExPASy TrEMBL
Match: A0A5A7TKQ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003530 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.7e-08
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 1   RFFDDNNVHKILVKGSEKKTEGREMWNHTLLVLRDQNKVFKVNRLRSNIHKNQTIF-DRS 60
           RF DD  VH+I+VK       G EM N  L V  D+ +VF+V RL+ N   NQTIF D S
Sbjct: 180 RFSDDGGVHEIVVKCG----GGEEMRNQRLAVFIDKKQVFEVKRLKWNFRGNQTIFLDGS 239

Query: 61  MENMMWDVYEWFFK 74
           + +MMWDVY+W F+
Sbjct: 240 VVDMMWDVYDWLFR 249

[Close]

BLAST of MS019740 vs. ExPASy TrEMBL
Match: A0A1S3B6K5 (uncharacterized protein LOC103486576 OS=Cucumis melo OX=3656 GN=LOC103486576 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.7e-08
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 1   RFFDDNNVHKILVKGSEKKTEGREMWNHTLLVLRDQNKVFKVNRLRSNIHKNQTIF-DRS 60
           RF DD  VH+I+VK       G EM N  L V  D+ +VF+V RL+ N   NQTIF D S
Sbjct: 180 RFSDDGGVHEIVVKCG----GGEEMRNQRLAVFIDKKQVFEVKRLKWNFRGNQTIFLDGS 239

Query: 61  MENMMWDVYEWFFK 74
           + +MMWDVY+W F+
Sbjct: 240 VVDMMWDVYDWLFR 249

[Close]

BLAST of MS019740 vs. ExPASy TrEMBL
Match: A0A0A0LAR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G750910 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 1   RFFDDNNVHKILVKGSEKKTEGREMWNHTLLVLRDQNKVFKVNRLRSNIHKNQTIF-DRS 60
           RF D+  VH+I+VK       G EM N  L V  D+ +VF+V RL+ N   NQTIF D S
Sbjct: 180 RFSDEGGVHEIVVKCG---GGGEEMRNQRLAVFIDKKQVFEVKRLKWNFRGNQTIFLDGS 239

Query: 61  MENMMWDVYEWFFK 74
           + +MMWDVY+W F+
Sbjct: 240 VVDMMWDVYDWLFR 250

[Close]

BLAST of MS019740 vs. ExPASy TrEMBL
Match: A0A6J1F3H9 (uncharacterized protein LOC111442047 OS=Cucurbita moschata OX=3662 GN=LOC111442047 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.3e-07
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 1   RFFDDNNVHKILVKGSEKKTEGREMWNHTLLVLRDQNKVFKVNRLRSNIHKNQTIF-DRS 60
           RF D   +H+I V  S     G+E+ N  L+VL D+ +VF+V RLR N   NQTIF D S
Sbjct: 179 RFSDGGILHEISVSCS----GGKELNNQRLVVLIDKKQVFEVKRLRWNFRGNQTIFLDGS 238

Query: 61  MENMMWDVYEWFFK 74
           + +MMWDVY+W F+
Sbjct: 239 VVDMMWDVYDWLFR 248

[Close]

BLAST of MS019740 vs. ExPASy TrEMBL
Match: A0A6J1J7K6 (uncharacterized protein LOC111481979 OS=Cucurbita maxima OX=3661 GN=LOC111481979 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.3e-07
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 1   RFFDDNNVHKILVKGSEKKTEGREMWNHTLLVLRDQNKVFKVNRLRSNIHKNQTIF-DRS 60
           RF D   +H++ V  S     G+E+ N  L+VL D+ +VF+V RLR N   NQTIF D S
Sbjct: 181 RFSDGGILHEVSVSCS----GGKELSNQRLVVLIDKKQVFEVKRLRWNFRGNQTIFLDGS 240

Query: 61  MENMMWDVYEWFFK 74
           + +MMWDVY+W F+
Sbjct: 241 VVDMMWDVYDWLFR 250

[Close]

BLAST of MS019740 vs. TAIR 10
Match: AT2G04220.1 (Plant protein of unknown function (DUF868) )

HSP 1 Score: 40.0 bits (92), Expect = 9.3e-04
Identity = 22/73 (30.14%), Postives = 36/73 (49.32%), Query Frame = 0


Query: 1   RFFDDNNVHKILVKGSEKKTEGREMWNHTLLVLRDQNKVFKVNRLRSNIHKNQTIF-DRS 60
           +F+D    H+I+V+ S    +  EMW     +  D   + +V  L+     NQT+  D+ 
Sbjct: 174 KFYDRKKEHEIIVESSTSGPKEPEMW-----ISIDGIVLIQVKNLQWKFRGNQTVLVDKQ 233

Query: 61  MENMMWDVYEWFF 73
              + WDVY+W F
Sbjct: 234 PVQVFWDVYDWLF 241

The following BLAST results are available for this feature:

BLAST of MS019740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904409.1	4.5e-08	50.00	uncharacterized protein LOC120090773 [Benincasa hispida]	[more]
XP_008442802.1	7.6e-08	50.00	PREDICTED: uncharacterized protein LOC103486576 [Cucumis melo] >KAA0043914.1 unc...	[more]
XP_004138008.2	2.9e-07	48.65	uncharacterized protein LOC101203134 [Cucumis sativus] >KAE8651077.1 hypothetica...	[more]
XP_023528798.1	8.4e-07	48.65	uncharacterized protein LOC111791624 [Cucurbita pepo subsp. pepo]	[more]
XP_031275483.1	8.4e-07	47.30	uncharacterized protein LOC116133961 [Pistacia vera]	[more]

BLAST of MS019740 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS019740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKQ8	3.7e-08	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B6K5	3.7e-08	50.00	uncharacterized protein LOC103486576 OS=Cucumis melo OX=3656 GN=LOC103486576 PE=...	[more]
A0A0A0LAR5	1.4e-07	48.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G750910 PE=4 SV=1	[more]
A0A6J1F3H9	5.3e-07	48.65	uncharacterized protein LOC111442047 OS=Cucurbita moschata OX=3662 GN=LOC1114420...	[more]
A0A6J1J7K6	5.3e-07	47.30	uncharacterized protein LOC111481979 OS=Cucurbita maxima OX=3661 GN=LOC111481979...	[more]

BLAST of MS019740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04220.1	9.3e-04	30.14	Plant protein of unknown function (DUF868)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008586	Protein of unknown function DUF868, plant	PFAM	PF05910	DUF868	coord: 1..72 e-value: 7.0E-8 score: 32.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019740.1	MS019740.1	mRNA