MS019730 (gene) Bitter gourd (TR) v1

Overview


Name	MS019730
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	H/ACA ribonucleoprotein complex subunit 4
Location	scaffold729: 1830603 .. 1832300 (-)
RNA-Seq Expression	MS019730
Synteny	MS019730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGAGCAAGGATGAGGATGTTTCACCGGCTGTAGGTTCCGACGAGCAGCCGCAGAAGGACGCCGCCGACTTTATGATCAAGCCCCAAAGTTTTACTCCTCCGGTGGACACATCTCAATGGCCTATTCTTCTCAAGAACTATGACCGTCTCAATGTGCGTACCGGTCACTACACTCCTCTGCCGTCCGGTTACTCCCCCCTCAAGCGTCCTCTGGCTGAGTACATCAGGTATGGTATTCTCAATCTTGATAAACCGGCGAATCCTTCGTCGCATGAGGTTGTGGCCTGGATTAAAAGGATTCTTCGGGTTGATAAAACTGGTCATAGTGGTACTCTCGACCCGAAGGTTACAGGGAACCTTATTGTATGCATTGATCGAGCCACGCGGCTCGTGAAATCGCAACAGGGTGCGGGTAAGGAGTATGTCTGTATTGCTCGGTTGCATTCTTCTGTGCCCGATGTTGCTAAAGTTTCTCGGGCTCTGGAGACACTCACTGGAGCTGTGTTTCAGAGGCCGCCGTTGATTTCGGCAGTGAAAAGACAGCTTAGGATTAGGACTATATATGAAAGCAAGCTTCTTGAGTACGACGCTGAAAAGCATTTGGTTGTTTTTTGGATTTCGTGTGAAGCTGGAACTTATGTTAGGACGCTGTGTGTACACTTGGGTTTGATTCTTGGTGTTGGGGGGCATATGCAAGAACTTAGGAGGGTGAGATCTGGGATTCTGGGCGAGAAGGATAACATGGTTACAATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATTTCAAGGATGAGAGTTATCTGAGGAGGGTAATTATGCCTCTTGAAGTGGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTCAATGCCATTTGTTATGGTGCTAAGTTGATGATTCCAGGGTTGTTGAGATTTGAGAATGATATTGAAGTTGGGGAAGAAGTTGTACTTATGACCACCAAGGGGGAAGCAATTGCTCTTGGTATTGCAGAGATGACCACTGCAGTGATGGCAACTTGTGATCATGGTATCGTTGCAAAGATTAAAAGGGTTGTGATGGATCGAGATACTTACCCAAGGAAATGGGGATTAGGTCCACGGGCATCTATGAAGAAAAAGCTTATTGGAGAAGGGAAGTTGGATAAGCATGGAAAACCGAATGAGAACACTCCTCAGGAATGGCTGAGGAATTTGGTTTTACCTACTGGTGGGGATTCCTTGGTTGCGAGCCATTTTGCTGCTGATGCCGCTGATGAGGGTAAGCAAGAGACAGAAAAAGATGGAGGCGGGCGTAAGCGGAAACTGGACGAAGACATGGAAGCTGCTCCTACTAAGAAACTGAAGACTGAAAAAGCTGAAGAAGCTGAAGAAGTTGATGAAGTGGGGAAGAAAGAAAAGAAGAAGAAGAAGAAAGACAAAGAGAAAGGCAATGTGGAACCTGCGGACGAGGAGAATGTTGAGAAGTCAGAGAAGAAAAAGAAGAAGAAAGACAAAGAAGCTAAAGAAGCAGGTACACCCGAGACCGAGAAGTCCGAGAAGAAAAAGAAGAAGAAAGATAAGGAATCTGGAAATGATCATTCTCAATCACCTGCTGGTATTCAAAATGGTGAAGCTGATGGTCATGTGGATGGGAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAATAAAGATGCAGAAGAA

mRNA sequence

CGGAGCAAGGATGAGGATGTTTCACCGGCTGTAGGTTCCGACGAGCAGCCGCAGAAGGACGCCGCCGACTTTATGATCAAGCCCCAAAGTTTTACTCCTCCGGTGGACACATCTCAATGGCCTATTCTTCTCAAGAACTATGACCGTCTCAATGTGCGTACCGGTCACTACACTCCTCTGCCGTCCGGTTACTCCCCCCTCAAGCGTCCTCTGGCTGAGTACATCAGGTATGGTATTCTCAATCTTGATAAACCGGCGAATCCTTCGTCGCATGAGGTTGTGGCCTGGATTAAAAGGATTCTTCGGGTTGATAAAACTGGTCATAGTGGTACTCTCGACCCGAAGGTTACAGGGAACCTTATTGTATGCATTGATCGAGCCACGCGGCTCGTGAAATCGCAACAGGGTGCGGGTAAGGAGTATGTCTGTATTGCTCGGTTGCATTCTTCTGTGCCCGATGTTGCTAAAGTTTCTCGGGCTCTGGAGACACTCACTGGAGCTGTGTTTCAGAGGCCGCCGTTGATTTCGGCAGTGAAAAGACAGCTTAGGATTAGGACTATATATGAAAGCAAGCTTCTTGAGTACGACGCTGAAAAGCATTTGGTTGTTTTTTGGATTTCGTGTGAAGCTGGAACTTATGTTAGGACGCTGTGTGTACACTTGGGTTTGATTCTTGGTGTTGGGGGGCATATGCAAGAACTTAGGAGGGTGAGATCTGGGATTCTGGGCGAGAAGGATAACATGGTTACAATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATTTCAAGGATGAGAGTTATCTGAGGAGGGTAATTATGCCTCTTGAAGTGGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTCAATGCCATTTGTTATGGTGCTAAGTTGATGATTCCAGGGTTGTTGAGATTTGAGAATGATATTGAAGTTGGGGAAGAAGTTGTACTTATGACCACCAAGGGGGAAGCAATTGCTCTTGGTATTGCAGAGATGACCACTGCAGTGATGGCAACTTGTGATCATGGTATCGTTGCAAAGATTAAAAGGGTTGTGATGGATCGAGATACTTACCCAAGGAAATGGGGATTAGGTCCACGGGCATCTATGAAGAAAAAGCTTATTGGAGAAGGGAAGTTGGATAAGCATGGAAAACCGAATGAGAACACTCCTCAGGAATGGCTGAGGAATTTGGTTTTACCTACTGGTGGGGATTCCTTGGTTGCGAGCCATTTTGCTGCTGATGCCGCTGATGAGGGTAAGCAAGAGACAGAAAAAGATGGAGGCGGGCGTAAGCGGAAACTGGACGAAGACATGGAAGCTGCTCCTACTAAGAAACTGAAGACTGAAAAAGCTGAAGAAGCTGAAGAAGTTGATGAAGTGGGGAAGAAAGAAAAGAAGAAGAAGAAGAAAGACAAAGAGAAAGGCAATGTGGAACCTGCGGACGAGGAGAATGTTGAGAAGTCAGAGAAGAAAAAGAAGAAGAAAGACAAAGAAGCTAAAGAAGCAGGTACACCCGAGACCGAGAAGTCCGAGAAGAAAAAGAAGAAGAAAGATAAGGAATCTGGAAATGATCATTCTCAATCACCTGCTGGTATTCAAAATGGTGAAGCTGATGGTCATGTGGATGGGAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAATAAAGATGCAGAAGAA

Coding sequence (CDS)

CGGAGCAAGGATGAGGATGTTTCACCGGCTGTAGGTTCCGACGAGCAGCCGCAGAAGGACGCCGCCGACTTTATGATCAAGCCCCAAAGTTTTACTCCTCCGGTGGACACATCTCAATGGCCTATTCTTCTCAAGAACTATGACCGTCTCAATGTGCGTACCGGTCACTACACTCCTCTGCCGTCCGGTTACTCCCCCCTCAAGCGTCCTCTGGCTGAGTACATCAGGTATGGTATTCTCAATCTTGATAAACCGGCGAATCCTTCGTCGCATGAGGTTGTGGCCTGGATTAAAAGGATTCTTCGGGTTGATAAAACTGGTCATAGTGGTACTCTCGACCCGAAGGTTACAGGGAACCTTATTGTATGCATTGATCGAGCCACGCGGCTCGTGAAATCGCAACAGGGTGCGGGTAAGGAGTATGTCTGTATTGCTCGGTTGCATTCTTCTGTGCCCGATGTTGCTAAAGTTTCTCGGGCTCTGGAGACACTCACTGGAGCTGTGTTTCAGAGGCCGCCGTTGATTTCGGCAGTGAAAAGACAGCTTAGGATTAGGACTATATATGAAAGCAAGCTTCTTGAGTACGACGCTGAAAAGCATTTGGTTGTTTTTTGGATTTCGTGTGAAGCTGGAACTTATGTTAGGACGCTGTGTGTACACTTGGGTTTGATTCTTGGTGTTGGGGGGCATATGCAAGAACTTAGGAGGGTGAGATCTGGGATTCTGGGCGAGAAGGATAACATGGTTACAATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATTTCAAGGATGAGAGTTATCTGAGGAGGGTAATTATGCCTCTTGAAGTGGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTCAATGCCATTTGTTATGGTGCTAAGTTGATGATTCCAGGGTTGTTGAGATTTGAGAATGATATTGAAGTTGGGGAAGAAGTTGTACTTATGACCACCAAGGGGGAAGCAATTGCTCTTGGTATTGCAGAGATGACCACTGCAGTGATGGCAACTTGTGATCATGGTATCGTTGCAAAGATTAAAAGGGTTGTGATGGATCGAGATACTTACCCAAGGAAATGGGGATTAGGTCCACGGGCATCTATGAAGAAAAAGCTTATTGGAGAAGGGAAGTTGGATAAGCATGGAAAACCGAATGAGAACACTCCTCAGGAATGGCTGAGGAATTTGGTTTTACCTACTGGTGGGGATTCCTTGGTTGCGAGCCATTTTGCTGCTGATGCCGCTGATGAGGGTAAGCAAGAGACAGAAAAAGATGGAGGCGGGCGTAAGCGGAAACTGGACGAAGACATGGAAGCTGCTCCTACTAAGAAACTGAAGACTGAAAAAGCTGAAGAAGCTGAAGAAGTTGATGAAGTGGGGAAGAAAGAAAAGAAGAAGAAGAAGAAAGACAAAGAGAAAGGCAATGTGGAACCTGCGGACGAGGAGAATGTTGAGAAGTCAGAGAAGAAAAAGAAGAAGAAAGACAAAGAAGCTAAAGAAGCAGGTACACCCGAGACCGAGAAGTCCGAGAAGAAAAAGAAGAAGAAAGATAAGGAATCTGGAAATGATCATTCTCAATCACCTGCTGGTATTCAAAATGGTGAAGCTGATGGTCATGTGGATGGGAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAATAAAGATGCAGAAGAA

Protein sequence

RSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAADAADEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKEKKKKKKDKEKGNVEPADEENVEKSEKKKKKKDKEAKEAGTPETEKSEKKKKKKDKESGNDHSQSPAGIQNGEADGHVDGSEKKKKKKKKNKDAEE

Homology

[Close]

BLAST of MS019730 vs. NCBI nr
Match: XP_022145634.1 (H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia])

HSP 1 Score: 1078.9 bits (2789), Expect = 0.0e+00
Identity = 566/566 (100.00%), Postives = 566/566 (100.00%), Query Frame = 0


Query: 1   RSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           RSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 17  RSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 76

Query: 61  PSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 77  PSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 136

Query: 121 IVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKR
Sbjct: 137 IVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKR 196

Query: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 197 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 256

Query: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 257 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 316

Query: 301 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMD 360
           AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMD
Sbjct: 317 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMD 376

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAA 420
           RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAA
Sbjct: 377 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAA 436

Query: 421 DAADEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKEKKKKKKDKE 480
           DAADEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKEKKKKKKDKE
Sbjct: 437 DAADEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKEKKKKKKDKE 496

Query: 481 KGNVEPADEENVEKSEKKKKKKDKEAKEAGTPETEKSEKKKKKKDKESGNDHSQSPAGIQ 540
           KGNVEPADEENVEKSEKKKKKKDKEAKEAGTPETEKSEKKKKKKDKESGNDHSQSPAGIQ
Sbjct: 497 KGNVEPADEENVEKSEKKKKKKDKEAKEAGTPETEKSEKKKKKKDKESGNDHSQSPAGIQ 556

Query: 541 NGEADGHVDGSEKKKKKKKKNKDAEE 567
           NGEADGHVDGSEKKKKKKKKNKDAEE
Sbjct: 557 NGEADGHVDGSEKKKKKKKKNKDAEE 582

[Close]

BLAST of MS019730 vs. NCBI nr
Match: XP_022934839.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata])

HSP 1 Score: 977.6 bits (2526), Expect = 4.5e-281
Identity = 519/570 (91.05%), Postives = 541/570 (94.91%), Query Frame = 0


Query: 1   RSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           RSKD++VSPAVGSDEQP KD ADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 17  RSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 76

Query: 61  PSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSG+SPLKRPLA+YIRYGILNLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNL
Sbjct: 77  PSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNL 136

Query: 121 IVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVC+ARLHSSVPDV+KV+RALETLTGAVFQRPPLISAVKR
Sbjct: 137 IVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKR 196

Query: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 197 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 256

Query: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 257 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 316

Query: 301 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMD 360
           AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+VMATCDHG+VAKIKRVVMD
Sbjct: 317 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRVVMD 376

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAA 420
           RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EW+RNLVLPTGGDSLVAS FA+
Sbjct: 377 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLVLPTGGDSLVASVFAS 436

Query: 421 DAA--DEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKEKKKKKKD 480
           D+A  DEGKQETEKDGGGRKRKLDE+ EAAP KKLK EK E+AEEV+E GKKEKKKKKKD
Sbjct: 437 DSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKKKKD 496

Query: 481 KEKGNVEPADEENVEKSEKKKKKKDKEAKEAGTP-ETEKSEKKKKKKDKESGNDHSQSPA 540
           KEKG+ EP+DEEN  + EKKKKKKDKE KEAGTP ET+KSEKKKKKKDKESG        
Sbjct: 497 KEKGSGEPSDEENTVRLEKKKKKKDKEGKEAGTPEETQKSEKKKKKKDKESG------VG 556

Query: 541 GIQNGEADGHVDGSEKKKKKKKKNK-DAEE 567
            +QNGEAD HVDGSEKKKKKKKKNK DAEE
Sbjct: 557 DVQNGEADDHVDGSEKKKKKKKKNKEDAEE 580

[Close]

BLAST of MS019730 vs. NCBI nr
Match: KAG7017302.1 (H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 974.9 bits (2519), Expect = 2.9e-280
Identity = 518/570 (90.88%), Postives = 540/570 (94.74%), Query Frame = 0


Query: 1   RSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           RSKD++VSPAVGSDEQP KD ADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 17  RSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 76

Query: 61  PSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSG+SPLKRPLA+YIRYGILNLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNL
Sbjct: 77  PSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNL 136

Query: 121 IVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVC+ARLHSSVPDV+KV+RALETLTGAVFQRPPLISAVKR
Sbjct: 137 IVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKR 196

Query: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 197 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 256

Query: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 257 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 316

Query: 301 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMD 360
           AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+VMATCDHG+VAKIKRVVMD
Sbjct: 317 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRVVMD 376

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAA 420
           RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EW+RNLVLPTGGDSLVAS FA+
Sbjct: 377 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLVLPTGGDSLVASVFAS 436

Query: 421 DAA--DEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKEKKKKKKD 480
           D+A  DEGKQETEKDGGGRKRKLDE+ EAAP KKLK EK E+AEEV+E GKKEKKKKKKD
Sbjct: 437 DSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKKKKD 496

Query: 481 KEKGNVEPADEENVEKSEKKKKKKDKEAKEAGTP-ETEKSEKKKKKKDKESGNDHSQSPA 540
           KEKG+ EP+DEEN  + EKKKKKKDK  KEAGTP ET+KSEKKKKKKDKESG        
Sbjct: 497 KEKGSGEPSDEENTVRLEKKKKKKDKGGKEAGTPEETQKSEKKKKKKDKESG------VG 556

Query: 541 GIQNGEADGHVDGSEKKKKKKKKNK-DAEE 567
            +QNGEAD HVDGSEKKKKKKKKNK DAEE
Sbjct: 557 DVQNGEADDHVDGSEKKKKKKKKNKEDAEE 580

[Close]

BLAST of MS019730 vs. NCBI nr
Match: KAG6580549.1 (H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 971.5 bits (2510), Expect = 3.2e-279
Identity = 514/569 (90.33%), Postives = 537/569 (94.38%), Query Frame = 0


Query: 1   RSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           RSKD++VSPAVGSDEQP KD ADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 17  RSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 76

Query: 61  PSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSG+SPLKRPLA+YIRYGILNLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNL
Sbjct: 77  PSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNL 136

Query: 121 IVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVC+ARLHSSVPDV+KV+RALETLTGAVFQRPPLISAVKR
Sbjct: 137 IVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKR 196

Query: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 197 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 256

Query: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 257 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 316

Query: 301 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMD 360
           AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+VMATCDHG+VAKIKRVVMD
Sbjct: 317 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRVVMD 376

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAA 420
           RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EW+RNLVLPTGGDSLVAS FA 
Sbjct: 377 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLVLPTGGDSLVASVFAT 436

Query: 421 DAA--DEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKEKKKKKKD 480
           D+A  DEGKQETEKDGGGRKRKLDE+ EAAP KKLK EK E+AEEV+E GKKEKKKKKKD
Sbjct: 437 DSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKKKKD 496

Query: 481 KEKGNVEPADEENVEKSEKKKKKKDKEAKEAGT-PETEKSEKKKKKKDKESGNDHSQSPA 540
           KEKG+ EP+DEEN  + EKKKKKKDKE KEAGT  ET+KSE+KKKKKDKESG        
Sbjct: 497 KEKGSGEPSDEENTVRLEKKKKKKDKEGKEAGTLEETQKSEEKKKKKDKESG------VG 556

Query: 541 GIQNGEADGHVDGSEKKKKKKKKNKDAEE 567
            +QNGEAD HVDGSEKKKKKKKKNK+  E
Sbjct: 557 DVQNGEADDHVDGSEKKKKKKKKNKEDSE 579

[Close]

BLAST of MS019730 vs. NCBI nr
Match: XP_022983194.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita maxima])

HSP 1 Score: 966.1 bits (2496), Expect = 1.3e-277
Identity = 518/571 (90.72%), Postives = 539/571 (94.40%), Query Frame = 0


Query: 1   RSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           RSKD++VSPAVGSDEQP KD ADFMIKPQSFTP VDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 17  RSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPSVDTSQWPILLKNYDRLNVRTGHYTPL 76

Query: 61  PSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSG+SPLKRPLA+YIRYGILNLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNL
Sbjct: 77  PSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNL 136

Query: 121 IVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVC+ARLHSSVPDV+KV+RALETLTGAVFQRPPLISAVKR
Sbjct: 137 IVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKR 196

Query: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 197 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 256

Query: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 257 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 316

Query: 301 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMD 360
           AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+VMATCDHG+VAKIKRVVMD
Sbjct: 317 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRVVMD 376

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAA 420
           RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EW+RNLVLPTGGDSLVAS FA 
Sbjct: 377 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLVLPTGGDSLVASVFAT 436

Query: 421 DAA--DEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKE-KKKKKK 480
           D+A  DEGKQETEKDGGGRKRKLDE+ EAAP KKLK EK E+AEEV+E GKKE KKKKKK
Sbjct: 437 DSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKKKKK 496

Query: 481 DKEKGNVEPADEENVEKSEKKKKKKDKEAKEAGTP-ETEKSEKKKKKKDKESGNDHSQSP 540
           DKEKG+ EP+DEEN E+SE KKKKKDKE KEAGTP E +KSEKKKKKKDKESG       
Sbjct: 497 DKEKGSGEPSDEENTEQSE-KKKKKDKEGKEAGTPEEKQKSEKKKKKKDKESG------V 556

Query: 541 AGIQNGEADGHVDGSEKKKKKKKKNK-DAEE 567
             +QNGEAD HVDGSEKKKKKKKKNK DAEE
Sbjct: 557 GDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 580

[Close]

BLAST of MS019730 vs. ExPASy Swiss-Prot
Match: Q9LD90 (H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF5 PE=1 SV=1)

HSP 1 Score: 771.5 bits (1991), Expect = 6.4e-222
Identity = 418/555 (75.32%), Postives = 472/555 (85.05%), Query Frame = 0


Query: 15  EQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEY 74
           E    D  D+MIKPQSFTP +DTSQWPILLKNYDRLNVRTGHYTP+ +G+SPLKRPL EY
Sbjct: 18  ENDAADTGDYMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHSPLKRPLQEY 77

Query: 75  IRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 134
           IRYG++NLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNLIVCIDRATRLVKSQ
Sbjct: 78  IRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 137

Query: 135 QGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLE 194
           QGAGKEYVC+ARLHS+VPDVAKV+RALE+LTGAVFQRPPLISAVKRQLRIRTIYESKLLE
Sbjct: 138 QGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLE 197

Query: 195 YDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDV 254
           YDA++HLVVFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSGILGE +NMVTMHDV
Sbjct: 198 YDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDV 257

Query: 255 MDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEND 314
           MDAQ+VYDN +DESYLRRVIMPLE++LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEND
Sbjct: 258 MDAQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEND 317

Query: 315 IEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPRA 374
           I+VG EVVLMTTKGEAIA+GIAEMTT+VMATCDHG+VAKIKRVVMDRDTYPRKWGLGPRA
Sbjct: 318 IDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRA 377

Query: 375 SMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAADAADEGKQETEKDG 434
           SMKKKLI +GKLDKHGKPNE TP EW RN+VLPTGGD+++A   AA    +   E  + G
Sbjct: 378 SMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAAAPEEIKADAENGEAG 437

Query: 435 GGRKRKLDEDMEA-AP--TKKLKTEKAEEAEEVDEVGKKEKKKKKKDKEKGNVEPADEEN 494
             RKRK D+  ++ AP  TKK KT K  E EE +E  K  KKKKKKDKE+   E A  E 
Sbjct: 438 EARKRKHDDSSDSPAPVTTKKSKT-KEVEGEEAEEKVKSSKKKKKKDKEEEKEEEAGSEK 497

Query: 495 VEKSEKKKKKKDKEAKEAGTPETEKSEKKKKKKDKESGNDHSQSPAGIQNGEADGHVDGS 554
            EK +KKK KK++  +E  +P++EK +KKKK KD E+  D     A  ++       +  
Sbjct: 498 KEK-KKKKDKKEEVIEEVASPKSEK-KKKKKSKDTEAAVDAEDESAAEKS-------EKK 557

Query: 555 EKKKKKKKKNKDAEE 567
           +KKK KKKKNKD+E+
Sbjct: 558 KKKKDKKKKNKDSED 562

[Close]

BLAST of MS019730 vs. ExPASy Swiss-Prot
Match: Q5ZJH9 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE=2 SV=1)

HSP 1 Score: 609.8 bits (1571), Expect = 3.2e-173
Identity = 324/514 (63.04%), Postives = 398/514 (77.43%), Query Frame = 0


Query: 17  PQKDAAD------FMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRP 76
           P +D AD      F+IKP+S    +DTSQWP+LLKN+D+LNV T HYTPLPSG +PLKR 
Sbjct: 21  PDEDVADIQHTEEFLIKPESRVAQLDTSQWPLLLKNFDKLNVLTTHYTPLPSGANPLKRE 80

Query: 77  LAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRL 136
           +++Y+R G +NLDKP+NPSSHEVVAWI+RILRV+KTGHSGTLDPKVTG LIVCI+RATRL
Sbjct: 81  ISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRL 140

Query: 137 VKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKRQLRIRTIYES 196
           VKSQQ AGKEYV I RLH+++   A+++RA+ETLTGA+FQRPPLI+AVKRQLR+RTIYES
Sbjct: 141 VKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLTGALFQRPPLIAAVKRQLRVRTIYES 200

Query: 197 KLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVT 256
           KL+EYD E+ L +FW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRVRSGILGE DNMVT
Sbjct: 201 KLVEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGILGEMDNMVT 260

Query: 257 MHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLR 316
           MHDV+DAQW YDN KD+SYLRRVI+PLE +LTS+KRLV+KDSAVNAICYGAK+M+PG+LR
Sbjct: 261 MHDVLDAQWQYDNNKDDSYLRRVILPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLR 320

Query: 317 FENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDRDTYPRKWGL 376
           +E+ IE+ +E+V++TTKGEAI L IA MTTAV++TCDHG+VAKIKRV+M+RDTYPRKWGL
Sbjct: 321 YEDGIELKQEIVVITTKGEAICLAIALMTTAVISTCDHGVVAKIKRVIMERDTYPRKWGL 380

Query: 377 GPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAADAADEGKQET 436
           GP+AS KK +I +G LDKHGKPNE TP  W +  V               D  +  K+E 
Sbjct: 381 GPKASQKKMMIQKGLLDKHGKPNECTPDSWKKEYV---------------DYRESSKKEA 440

Query: 437 EKDGGGRKRKLDEDMEAAPTKKLKTEKAEEA---------EEVDEVGKKEKKKKKKDKEK 496
            K       +   ++E AP +K ++E   EA            +E+ KKEKKKKKK+K+ 
Sbjct: 441 AK-----VPQAVSEVERAPKRKRESESENEAVSPPPSPATPPPEELSKKEKKKKKKEKKA 500

Query: 497 GNVEPADEENVE------KSEKKKKKKDKEAKEA 510
                + EE VE        +KKKKKK KE +E+
Sbjct: 501 KEAAESGEEQVEVISESSAKKKKKKKKQKEVEES 514

[Close]

BLAST of MS019730 vs. ExPASy Swiss-Prot
Match: P40615 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Rattus norvegicus OX=10116 GN=Dkc1 PE=1 SV=4)

HSP 1 Score: 603.6 bits (1555), Expect = 2.3e-171
Identity = 317/506 (62.65%), Postives = 397/506 (78.46%), Query Frame = 0


Query: 3   KDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPS 62
           K ++  P   +D    + A DF+IKP+S    +DTSQWP+LLKN+DRLNVRT HYTP+P 
Sbjct: 16  KKKERKPLPEADVAEIQHAEDFLIKPESKAAQLDTSQWPLLLKNFDRLNVRTTHYTPIPC 75

Query: 63  GYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIV 122
           G +PLKR + EY+R G +NLDKP+NPSSHEVVAWI+RILRV+KTGHSGTLDPKVTG LIV
Sbjct: 76  GSNPLKREIGEYVRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 135

Query: 123 CIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKRQL 182
           CI+RATRLVKSQQ AGKEYV + RLH+++   A++SRALETLTGA+FQRPPLI+AVKRQL
Sbjct: 136 CIERATRLVKSQQSAGKEYVGVVRLHNAIEGTAQLSRALETLTGALFQRPPLIAAVKRQL 195

Query: 183 RIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGIL 242
           R+RTIYES+++EYD E+ L VFW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRVRSG++
Sbjct: 196 RVRTIYESRVVEYDPERRLGVFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVV 255

Query: 243 GEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAK 302
           GE+D+MVTMHDV+DAQ++YD+ +DESYLRRV+ PLE +LTS+KRLV+KDSAVNAICYGAK
Sbjct: 256 GERDHMVTMHDVLDAQYLYDHHRDESYLRRVVFPLEKLLTSHKRLVMKDSAVNAICYGAK 315

Query: 303 LMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDRD 362
           +M+PGLLR+E+ IEV +EVV++TTKGEA+ + IA MTTAV++TCDHG+VAKIKRV+M+RD
Sbjct: 316 IMLPGLLRYEDGIEVNQEVVVITTKGEAVCVAIALMTTAVISTCDHGVVAKIKRVIMERD 375

Query: 363 TYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAADA 422
           TYPRKWGLGP+AS KK+LI +G LDKHG+P + TP  W R+ V     DS  +    A  
Sbjct: 376 TYPRKWGLGPKASQKKQLIKQGLLDKHGRPTDGTPASWTRDYV--DYSDS--SKKATAAE 435

Query: 423 ADEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKEKKKKKKDKEKG 482
           A  G   T       KRK D D +           A+EA        K++KKKKK+K  G
Sbjct: 436 ATPGPGVTADAASIVKRKRDSDSD-----------ADEATPTTTPRVKKEKKKKKEKADG 495

Query: 483 NVEPADEENVEKSEKKKKKKDKEAKE 509
             E A++ + + + KKKKKK + A+E
Sbjct: 496 GEEAAEDGDGDATRKKKKKKARAAEE 506

[Close]

BLAST of MS019730 vs. ExPASy Swiss-Prot
Match: O60832 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Homo sapiens OX=9606 GN=DKC1 PE=1 SV=3)

HSP 1 Score: 601.7 bits (1550), Expect = 8.8e-171
Identity = 315/496 (63.51%), Postives = 390/496 (78.63%), Query Frame = 0


Query: 21  AADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGIL 80
           A +F+IKP+S    +DTSQWP+LLKN+D+LNVRT HYTPL  G +PLKR + +YIR G +
Sbjct: 33  AEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLACGSNPLKREIGDYIRTGFI 92

Query: 81  NLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKE 140
           NLDKP+NPSSHEVVAWI+RILRV+KTGHSGTLDPKVTG LIVCI+RATRLVKSQQ AGKE
Sbjct: 93  NLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKE 152

Query: 141 YVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAEKH 200
           YV I RLH+++    ++SRALETLTGA+FQRPPLI+AVKRQLR+RTIYESK++EYD E+ 
Sbjct: 153 YVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQLRVRTIYESKMIEYDPERR 212

Query: 201 LVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWV 260
           L +FW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRVRSG++ EKD+MVTMHDV+DAQW+
Sbjct: 213 LGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDAQWL 272

Query: 261 YDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEE 320
           YDN KDESYLRRV+ PLE +LTS+KRLV+KDSAVNAICYGAK+M+PG+LR+E+ IEV +E
Sbjct: 273 YDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQE 332

Query: 321 VVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKL 380
           +V++TTKGEAI + IA MTTAV++TCDHGIVAKIKRV+M+RDTYPRKWGLGP+AS KK +
Sbjct: 333 IVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIMERDTYPRKWGLGPKASQKKLM 392

Query: 381 IGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAADAADEGKQETEKDGGGRKRK 440
           I +G LDKHGKP ++TP  W +  V               D ++  K+E   +     + 
Sbjct: 393 IKQGLLDKHGKPTDSTPATWKQEYV---------------DYSESAKKEVVAEVVKAPQV 452

Query: 441 LDEDMEAAPTKKLKTEKAEEAEE----VDEVGKKEKKKKKKDKE-----KGNVEPADEEN 500
           +    EAA T K K E   E++E      ++ KKEKKK KKDK+     +   EP D ++
Sbjct: 453 V---AEAAKTAKRKRESESESDETPPAAPQLIKKEKKKSKKDKKAKAGLESGAEPGDGDS 510

Query: 501 VEKSEKKKKKKDKEAK 508
               +KKKKKK KE +
Sbjct: 513 DTTKKKKKKKKAKEVE 510

[Close]

BLAST of MS019730 vs. ExPASy Swiss-Prot
Match: Q54T81 (Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=nola4 PE=1 SV=1)

HSP 1 Score: 601.3 bits (1549), Expect = 1.1e-170
Identity = 324/540 (60.00%), Postives = 406/540 (75.19%), Query Frame = 0


Query: 25  MIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDK 84
           +IKP+  TP +DTS+WP+LLKNYD+L+VRTGHYTP+P+G+SPLKRP+ EY++YGI+NLDK
Sbjct: 22  VIKPEK-TPILDTSKWPLLLKNYDQLSVRTGHYTPIPNGHSPLKRPIKEYVKYGIINLDK 81

Query: 85  PANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCI 144
           P+NPSSHEVVAWI+ ILRV KTGHSGTLDPKVTG LIVCI+RATRLVKSQQGAGKEY+ I
Sbjct: 82  PSNPSSHEVVAWIRTILRVTKTGHSGTLDPKVTGCLIVCIERATRLVKSQQGAGKEYIGI 141

Query: 145 ARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAEKHLVVF 204
            RLH ++    ++S+A++TLTGA+FQRPP  SAVK++LR+RTI+ SKLLE+D E++L + 
Sbjct: 142 VRLHGAIEGTTELSKAVDTLTGALFQRPPQKSAVKKRLRVRTIHNSKLLEFDPERNLGLI 201

Query: 205 WISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNF 264
           W+ CEAGTY+RTLCVH+GL++GVGGHMQELRRVRSGI+ EK   VTMHDV DAQ+ YDN 
Sbjct: 202 WVDCEAGTYIRTLCVHIGLLMGVGGHMQELRRVRSGIMSEKKGQVTMHDVKDAQYEYDNS 261

Query: 265 KDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLM 324
           KDESYLRRVI PLE +LT+YKR+VVKDSA+NAICYGAKLMIPGLLR+E DIE  EEVVL+
Sbjct: 262 KDESYLRRVIQPLEAILTNYKRIVVKDSAINAICYGAKLMIPGLLRYEQDIESNEEVVLI 321

Query: 325 TTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEG 384
           TTKGEAIA+GIA+MTTA MATCDHG+VA IKRV+MDRD YP +WGLGP+A +KK++I +G
Sbjct: 322 TTKGEAIAIGIAQMTTASMATCDHGVVATIKRVIMDRDVYPVRWGLGPKAKVKKEMIKDG 381

Query: 385 KLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAADAADEGKQETEKDGGGRKRKLDED 444
           KLDK GKPNE TP +W       TG    VA+       +    +T K            
Sbjct: 382 KLDKFGKPNEKTPSDWTNTYTYYTG---QVATTTTTSPVESMNVDTPKKA---------- 441

Query: 445 MEAAPTKKLKTEKAEEAEEVDEVGKKEKKKKKKDK---EKGNVEPADEENVEKSEKKKKK 504
             A+   K + E +E+ + V +  KK+KK+KKKD    E    + + ++  EK EKK+KK
Sbjct: 442 -TASVAVKAEVESSEDEKPVPKKEKKDKKEKKKDSSDDESEEEKSSKKDKKEKKEKKEKK 501

Query: 505 KDKEAKEAGTPETEKSEKKKKKKDKESGNDHSQSPAGIQNGEADGHVDGSEKKKKKKKKN 562
           + K +K+    E+ K EKK KK+ K S  D           E+    D  +KK+KKK KN
Sbjct: 502 EKKSSKDDSDDESSKKEKKDKKRKKSSDKDSDSEK------ESSDKKDKKDKKEKKKSKN 540

[Close]

BLAST of MS019730 vs. ExPASy TrEMBL
Match: A0A6J1CVU2 (H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC111015035 PE=3 SV=1)

HSP 1 Score: 1078.9 bits (2789), Expect = 0.0e+00
Identity = 566/566 (100.00%), Postives = 566/566 (100.00%), Query Frame = 0


Query: 1   RSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           RSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 17  RSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 76

Query: 61  PSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 77  PSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 136

Query: 121 IVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKR
Sbjct: 137 IVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKR 196

Query: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 197 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 256

Query: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 257 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 316

Query: 301 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMD 360
           AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMD
Sbjct: 317 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMD 376

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAA 420
           RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAA
Sbjct: 377 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAA 436

Query: 421 DAADEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKEKKKKKKDKE 480
           DAADEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKEKKKKKKDKE
Sbjct: 437 DAADEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKEKKKKKKDKE 496

Query: 481 KGNVEPADEENVEKSEKKKKKKDKEAKEAGTPETEKSEKKKKKKDKESGNDHSQSPAGIQ 540
           KGNVEPADEENVEKSEKKKKKKDKEAKEAGTPETEKSEKKKKKKDKESGNDHSQSPAGIQ
Sbjct: 497 KGNVEPADEENVEKSEKKKKKKDKEAKEAGTPETEKSEKKKKKKDKESGNDHSQSPAGIQ 556

Query: 541 NGEADGHVDGSEKKKKKKKKNKDAEE 567
           NGEADGHVDGSEKKKKKKKKNKDAEE
Sbjct: 557 NGEADGHVDGSEKKKKKKKKNKDAEE 582

[Close]

BLAST of MS019730 vs. ExPASy TrEMBL
Match: A0A6J1F3Q2 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111441884 PE=3 SV=1)

HSP 1 Score: 977.6 bits (2526), Expect = 2.2e-281
Identity = 519/570 (91.05%), Postives = 541/570 (94.91%), Query Frame = 0


Query: 1   RSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           RSKD++VSPAVGSDEQP KD ADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 17  RSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 76

Query: 61  PSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSG+SPLKRPLA+YIRYGILNLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNL
Sbjct: 77  PSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNL 136

Query: 121 IVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVC+ARLHSSVPDV+KV+RALETLTGAVFQRPPLISAVKR
Sbjct: 137 IVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKR 196

Query: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 197 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 256

Query: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 257 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 316

Query: 301 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMD 360
           AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+VMATCDHG+VAKIKRVVMD
Sbjct: 317 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRVVMD 376

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAA 420
           RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EW+RNLVLPTGGDSLVAS FA+
Sbjct: 377 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLVLPTGGDSLVASVFAS 436

Query: 421 DAA--DEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKEKKKKKKD 480
           D+A  DEGKQETEKDGGGRKRKLDE+ EAAP KKLK EK E+AEEV+E GKKEKKKKKKD
Sbjct: 437 DSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKKKKD 496

Query: 481 KEKGNVEPADEENVEKSEKKKKKKDKEAKEAGTP-ETEKSEKKKKKKDKESGNDHSQSPA 540
           KEKG+ EP+DEEN  + EKKKKKKDKE KEAGTP ET+KSEKKKKKKDKESG        
Sbjct: 497 KEKGSGEPSDEENTVRLEKKKKKKDKEGKEAGTPEETQKSEKKKKKKDKESG------VG 556

Query: 541 GIQNGEADGHVDGSEKKKKKKKKNK-DAEE 567
            +QNGEAD HVDGSEKKKKKKKKNK DAEE
Sbjct: 557 DVQNGEADDHVDGSEKKKKKKKKNKEDAEE 580

[Close]

BLAST of MS019730 vs. ExPASy TrEMBL
Match: A0A6J1J6M3 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111481852 PE=3 SV=1)

HSP 1 Score: 966.1 bits (2496), Expect = 6.5e-278
Identity = 518/571 (90.72%), Postives = 539/571 (94.40%), Query Frame = 0


Query: 1   RSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           RSKD++VSPAVGSDEQP KD ADFMIKPQSFTP VDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 17  RSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPSVDTSQWPILLKNYDRLNVRTGHYTPL 76

Query: 61  PSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSG+SPLKRPLA+YIRYGILNLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNL
Sbjct: 77  PSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNL 136

Query: 121 IVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVC+ARLHSSVPDV+KV+RALETLTGAVFQRPPLISAVKR
Sbjct: 137 IVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKR 196

Query: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 197 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 256

Query: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 257 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 316

Query: 301 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMD 360
           AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+VMATCDHG+VAKIKRVVMD
Sbjct: 317 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRVVMD 376

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAA 420
           RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EW+RNLVLPTGGDSLVAS FA 
Sbjct: 377 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLVLPTGGDSLVASVFAT 436

Query: 421 DAA--DEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKE-KKKKKK 480
           D+A  DEGKQETEKDGGGRKRKLDE+ EAAP KKLK EK E+AEEV+E GKKE KKKKKK
Sbjct: 437 DSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKKKKK 496

Query: 481 DKEKGNVEPADEENVEKSEKKKKKKDKEAKEAGTP-ETEKSEKKKKKKDKESGNDHSQSP 540
           DKEKG+ EP+DEEN E+SE KKKKKDKE KEAGTP E +KSEKKKKKKDKESG       
Sbjct: 497 DKEKGSGEPSDEENTEQSE-KKKKKDKEGKEAGTPEEKQKSEKKKKKKDKESG------V 556

Query: 541 AGIQNGEADGHVDGSEKKKKKKKKNK-DAEE 567
             +QNGEAD HVDGSEKKKKKKKKNK DAEE
Sbjct: 557 GDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 580

[Close]

BLAST of MS019730 vs. ExPASy TrEMBL
Match: A0A6J1FP65 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111446978 PE=3 SV=1)

HSP 1 Score: 951.4 bits (2458), Expect = 1.7e-273
Identity = 512/570 (89.82%), Postives = 533/570 (93.51%), Query Frame = 0


Query: 1   RSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           RSKDE+VSP VGSDEQP KD ADF+IKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 17  RSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 76

Query: 61  PSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSG+SPLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 77  PSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 136

Query: 121 IVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVC+ARLHS+VPDVAKV+RALETLTGAVFQRPPLISAVKR
Sbjct: 137 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKR 196

Query: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 197 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 256

Query: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 257 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 316

Query: 301 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMD 360
           AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+VMATCDHGIVAKIKRVVMD
Sbjct: 317 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGIVAKIKRVVMD 376

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAA 420
           RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVAS FA+
Sbjct: 377 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASVFAS 436

Query: 421 DAADEGKQ---ETEKDGGGRKRKLDEDME-AAPTKKLKTEKAEEAEEVDEVGKKEKKKKK 480
           D A   +    + EKDG GRKRK DE+ E AAP KKLK EK EEAEE++E GKKEKKKKK
Sbjct: 437 DTATPKQSVAADEEKDGVGRKRKHDEETEAAAPAKKLKGEKVEEAEEIEESGKKEKKKKK 496

Query: 481 KDKEKGNVEPADEENVEKSEKKKKKKDKEAK-EAGTPETEKSE-KKKKKKDKESGNDHSQ 540
           KDKEKG +E +D+E  EKSEKKKKKKDK+AK EAGTPETEKSE KKKKKKDKESGND   
Sbjct: 497 KDKEKGGIEASDDEKAEKSEKKKKKKDKDAKEEAGTPETEKSEKKKKKKKDKESGND--- 556

Query: 541 SPAGIQNGEADGHVD-GSEKKKKKKKKNKD 564
                QNGEA+GHVD GSEKKKKKKKKNK+
Sbjct: 557 ----TQNGEAEGHVDGGSEKKKKKKKKNKE 579

[Close]

BLAST of MS019730 vs. ExPASy TrEMBL
Match: A0A6J1I1U9 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111470135 PE=3 SV=1)

HSP 1 Score: 946.4 bits (2445), Expect = 5.3e-272
Identity = 505/565 (89.38%), Postives = 526/565 (93.10%), Query Frame = 0


Query: 1   RSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           RSKDE+VSP V SDEQP KD ADF+IKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 17  RSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 76

Query: 61  PSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSG+SPLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 77  PSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 136

Query: 121 IVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVC+ARLHS+VPDVAKV+RALETLTGAVFQRPPLISAVKR
Sbjct: 137 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKR 196

Query: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 197 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 256

Query: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 257 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 316

Query: 301 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMD 360
           AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+VMATCDHGIVAKIKRVVMD
Sbjct: 317 AKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGIVAKIKRVVMD 376

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAA 420
           RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVAS FA+
Sbjct: 377 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASVFAS 436

Query: 421 DAADEGKQ---ETEKDGGGRKRKLDEDME-AAPTKKLKTEKAEEAEEVDEVGKKEKKKKK 480
           D A   +    + EKDG G+KRK DE+ E AAP KKLK EKAEEAEEV+E GKKEKKKKK
Sbjct: 437 DTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEEAEEVEESGKKEKKKKK 496

Query: 481 KDKEKGNVEPADEENVEKSEKKKKKKDKEAKEAGTPETEKSE-KKKKKKDKESGNDHSQS 540
           KDKEKG +E +D+E  EK EKKKKKKDK+AKEAGTPETEKSE KKKKKKDKESGND    
Sbjct: 497 KDKEKGGIEASDDEKAEKPEKKKKKKDKDAKEAGTPETEKSEKKKKKKKDKESGND---- 556

Query: 541 PAGIQNGEADGHVDGSEKKKKKKKK 561
               QNGEADGHVDG  +KKKK K+
Sbjct: 557 ---TQNGEADGHVDGGSEKKKKNKE 574

[Close]

BLAST of MS019730 vs. TAIR 10
Match: AT3G57150.1 (homologue of NAP57 )

HSP 1 Score: 771.5 bits (1991), Expect = 4.5e-223
Identity = 418/555 (75.32%), Postives = 472/555 (85.05%), Query Frame = 0


Query: 15  EQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEY 74
           E    D  D+MIKPQSFTP +DTSQWPILLKNYDRLNVRTGHYTP+ +G+SPLKRPL EY
Sbjct: 18  ENDAADTGDYMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHSPLKRPLQEY 77

Query: 75  IRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 134
           IRYG++NLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNLIVCIDRATRLVKSQ
Sbjct: 78  IRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ 137

Query: 135 QGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLE 194
           QGAGKEYVC+ARLHS+VPDVAKV+RALE+LTGAVFQRPPLISAVKRQLRIRTIYESKLLE
Sbjct: 138 QGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIRTIYESKLLE 197

Query: 195 YDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDV 254
           YDA++HLVVFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSGILGE +NMVTMHDV
Sbjct: 198 YDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGENNNMVTMHDV 257

Query: 255 MDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEND 314
           MDAQ+VYDN +DESYLRRVIMPLE++LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEND
Sbjct: 258 MDAQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFEND 317

Query: 315 IEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPRA 374
           I+VG EVVLMTTKGEAIA+GIAEMTT+VMATCDHG+VAKIKRVVMDRDTYPRKWGLGPRA
Sbjct: 318 IDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRA 377

Query: 375 SMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAADAADEGKQETEKDG 434
           SMKKKLI +GKLDKHGKPNE TP EW RN+VLPTGGD+++A   AA    +   E  + G
Sbjct: 378 SMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAAAPEEIKADAENGEAG 437

Query: 435 GGRKRKLDEDMEA-AP--TKKLKTEKAEEAEEVDEVGKKEKKKKKKDKEKGNVEPADEEN 494
             RKRK D+  ++ AP  TKK KT K  E EE +E  K  KKKKKKDKE+   E A  E 
Sbjct: 438 EARKRKHDDSSDSPAPVTTKKSKT-KEVEGEEAEEKVKSSKKKKKKDKEEEKEEEAGSEK 497

Query: 495 VEKSEKKKKKKDKEAKEAGTPETEKSEKKKKKKDKESGNDHSQSPAGIQNGEADGHVDGS 554
            EK +KKK KK++  +E  +P++EK +KKKK KD E+  D     A  ++       +  
Sbjct: 498 KEK-KKKKDKKEEVIEEVASPKSEK-KKKKKSKDTEAAVDAEDESAAEKS-------EKK 557

Query: 555 EKKKKKKKKNKDAEE 567
           +KKK KKKKNKD+E+
Sbjct: 558 KKKKDKKKKNKDSED 562

[Close]

BLAST of MS019730 vs. TAIR 10
Match: AT5G14460.1 (Pseudouridine synthase family protein )

HSP 1 Score: 96.7 bits (239), Expect = 6.5e-20
Identity = 63/202 (31.19%), Postives = 100/202 (49.50%), Query Frame = 0


Query: 79  ILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 138
           +L ++KP   +S  V   ++R+++V K GH+GTLDP  TG LIVC+ +AT++V   QG  
Sbjct: 323 VLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMI 382

Query: 139 KEYVCIARLHSSV-------PDVAK----------VSRALETLTGAVFQRPPLISAVK-- 198
           K Y  + RL  +        P + +          + +AL +  G ++Q PP+ SA+K  
Sbjct: 383 KGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAIKVG 442

Query: 199 ------RQLRIRTIYES----KLLEYDAEKHL-----VVFWISCEAGTYVRTLCVHLGLI 247
                 +  R  T+  S     + ++D E+ L     ++F + C  GTY+R+LC  L   
Sbjct: 443 GEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADLAKA 502

The following BLAST results are available for this feature:

BLAST of MS019730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145634.1	0.0e+00	100.00	H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia]	[more]
XP_022934839.1	4.5e-281	91.05	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata]	[more]
KAG7017302.1	2.9e-280	90.88	H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp...	[more]
KAG6580549.1	3.2e-279	90.33	H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp...	[more]
XP_022983194.1	1.3e-277	90.72	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita maxima]	[more]

BLAST of MS019730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD90	6.4e-222	75.32	H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF...	[more]
Q5ZJH9	3.2e-173	63.04	H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE...	[more]
P40615	2.3e-171	62.65	H/ACA ribonucleoprotein complex subunit DKC1 OS=Rattus norvegicus OX=10116 GN=Dk...	[more]
O60832	8.8e-171	63.51	H/ACA ribonucleoprotein complex subunit DKC1 OS=Homo sapiens OX=9606 GN=DKC1 PE=...	[more]
Q54T81	1.1e-170	60.00	Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum O...	[more]

BLAST of MS019730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CVU2	0.0e+00	100.00	H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1F3Q2	2.2e-281	91.05	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J6M3	6.5e-278	90.72	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FP65	1.7e-273	89.82	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1I1U9	5.3e-272	89.38	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of MS019730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57150.1	4.5e-223	75.32	homologue of NAP57	[more]
AT5G14460.1	6.5e-20	31.19	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 487..507
None	No IPR available	GENE3D	3.30.2350.10	Pseudouridine synthase	coord: 70..276 e-value: 2.2E-182 score: 607.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 420..566
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 422..531
None	No IPR available	PANTHER	PTHR23127:SF3	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4	coord: 18..566
None	No IPR available	PROSITE	PS50890	PUA	coord: 284..359 score: 19.265182
None	No IPR available	CDD	cd02572	PseudoU_synth_hDyskerin	coord: 76..258 e-value: 1.28225E-134 score: 387.387
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 285..359 e-value: 2.2E-24 score: 97.0
IPR002478	PUA domain	PFAM	PF01472	PUA	coord: 285..357 e-value: 9.8E-22 score: 76.7
IPR012960	Dyskerin-like	SMART	SM01136	DKCLD_2	coord: 36..94 e-value: 5.6E-34 score: 128.9
IPR012960	Dyskerin-like	PFAM	PF08068	DKCLD	coord: 37..94 e-value: 7.5E-31 score: 106.0
IPR004521	Uncharacterised domain CHP00451	TIGRFAM	TIGR00451	TIGR00451	coord: 281..356 e-value: 1.4E-8 score: 32.9
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 37..368 e-value: 2.2E-182 score: 607.4
IPR032819	tRNA pseudouridylate synthase B, C-terminal	PFAM	PF16198	TruB_C_2	coord: 215..281 e-value: 1.2E-22 score: 79.8
IPR002501	Pseudouridine synthase II, N-terminal	PFAM	PF01509	TruB_N	coord: 98..214 e-value: 2.7E-19 score: 70.0
IPR004802	tRNA pseudouridine synthase B family	TIGRFAM	TIGR00425	TIGR00425	coord: 44..369 e-value: 2.7E-161 score: 534.0
IPR004802	tRNA pseudouridine synthase B family	PANTHER	PTHR23127	CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5	coord: 18..566
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 284..365
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 37..282

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019730.1	MS019730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
biological_process	GO:0006396	RNA processing
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding