MS019674 (gene) Bitter gourd (TR) v1

Overview


Name	MS019674
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Low temperature and salt responsive protein family
Location	scaffold729: 1437298 .. 1437584 (+)
RNA-Seq Expression	MS019674
Synteny	MS019674

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCAAAGGGCAAATGCAAGGCGATCGAATCCCAAAGAGAATGGGCTCAGCCACCTTCCTCGAAGTTCTTCTCGCCGTCTTCATCCCTCCCCTCGGCGTCTTCCTCCGCTACGGCATTGGGGTACTATCTCCGATTCCACTTCGATTCAATCTTCTATTACCAACATTCAATCTCTCAGCTTCTGTTTAATTCTTTTGCAGATTGAGTTTTGGATTGATTTGTTGCTCACATTTTTGGGCTATCTTCCTGGAATTGTATACGCCGTTTATGTACTGGTTGGAATGCGA

mRNA sequence

TCCAAAGGGCAAATGCAAGGCGATCGAATCCCAAAGAGAATGGGCTCAGCCACCTTCCTCGAAGTTCTTCTCGCCGTCTTCATCCCTCCCCTCGGCGTCTTCCTCCGCTACGGCATTGGGATTGAGTTTTGGATTGATTTGTTGCTCACATTTTTGGGCTATCTTCCTGGAATTGTATACGCCGTTTATGTACTGGTTGGAATGCGA

Coding sequence (CDS)

TCCAAAGGGCAAATGCAAGGCGATCGAATCCCAAAGAGAATGGGCTCAGCCACCTTCCTCGAAGTTCTTCTCGCCGTCTTCATCCCTCCCCTCGGCGTCTTCCTCCGCTACGGCATTGGGATTGAGTTTTGGATTGATTTGTTGCTCACATTTTTGGGCTATCTTCCTGGAATTGTATACGCCGTTTATGTACTGGTTGGAATGCGA

Protein sequence

SKGQMQGDRIPKRMGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAVYVLVGMR

Homology

[Close]

BLAST of MS019674 vs. NCBI nr
Match: XP_022145681.1 (low temperature-induced protein lt101.2-like [Momordica charantia])

HSP 1 Score: 126.3 bits (316), Expect = 1.0e-25
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 5  MQGDRIPKRMGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAVYV 64
          MQGDRIPKRMGSATFLEVLLAVFIPPLGVFLRYGIGIEFWI LLLTFLGYLPGIVYAVYV
Sbjct: 1  MQGDRIPKRMGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIALLLTFLGYLPGIVYAVYV 60

Query: 65 LVGMR 70
          LVGMR
Sbjct: 61 LVGMR 65

[Close]

BLAST of MS019674 vs. NCBI nr
Match: XP_022945600.1 (low temperature-induced protein lt101.2-like [Cucurbita moschata] >XP_023005767.1 low temperature-induced protein lt101.2-like [Cucurbita maxima] >XP_023540674.1 low temperature-induced protein lt101.2-like [Cucurbita pepo subsp. pepo] >KAG7027999.1 Low temperature-induced protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.3 bits (303), Expect = 3.2e-24
Identity = 57/64 (89.06%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 5  MQGDRIPKRMGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAVYV 64
          MQG+RIPKRMGSATF+EVL+A+FIPPLGVFLRYGIG+EFWIDL+LTFLGYLPGI+YAVYV
Sbjct: 1  MQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYV 60

Query: 65 LVGM 69
          LVGM
Sbjct: 61 LVGM 64

[Close]

BLAST of MS019674 vs. NCBI nr
Match: XP_038906189.1 (low temperature-induced protein lt101.2-like [Benincasa hispida])

HSP 1 Score: 120.6 bits (301), Expect = 5.5e-24
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 5  MQGDRIPKRMGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAVYV 64
          MQGDRIPKRMGSATF+EVLLA+FIPPLGVFLRYGIGIEFWIDL+LT  GYLPGI+YAVYV
Sbjct: 16 MQGDRIPKRMGSATFIEVLLAIFIPPLGVFLRYGIGIEFWIDLVLTLFGYLPGIIYAVYV 75

Query: 65 LVGMR 70
          LVG R
Sbjct: 76 LVGTR 80

[Close]

BLAST of MS019674 vs. NCBI nr
Match: XP_008442650.1 (PREDICTED: low temperature-induced protein lt101.2-like [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 1.4e-22
Identity = 56/67 (83.58%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 3  GQMQGDRIPKRMGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAV 62
          G  Q DRIPKRMGSATF+EVLLA+FIPP+GVFLRYGIGIEFWIDL+LTF GY+PGIVYAV
Sbjct: 3  GAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYIPGIVYAV 62

Query: 63 YVLVGMR 70
          YVL+G R
Sbjct: 63 YVLIGTR 69

[Close]

BLAST of MS019674 vs. NCBI nr
Match: XP_004137807.1 (low temperature-induced protein lt101.2 [Cucumis sativus] >KGN58938.1 hypothetical protein Csa_001360 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 1.8e-22
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 3  GQMQGDRIPKRMGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAV 62
          G  Q DRIPKRMGSATF+EVLLA+FIPP+GVFLRYGIGIEFWIDL+LTF GY+PGI+YAV
Sbjct: 3  GGGQVDRIPKRMGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYIPGIIYAV 62

Query: 63 YVLVGMR 70
          YVL+G R
Sbjct: 63 YVLIGTR 69

[Close]

BLAST of MS019674 vs. ExPASy Swiss-Prot
Match: Q9ARD5 (Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.4e-16
Identity = 39/53 (73.58%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 14 MGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAVYVLV 67
          M SATF+EV+LA+ +PP+GVFLRYG+ +EFWI LLLT LGY+PGI+YAVYVLV
Sbjct: 1  MASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVLV 53

[Close]

BLAST of MS019674 vs. ExPASy Swiss-Prot
Match: P68178 (Salt stress-induced hydrophobic peptide ESI3 OS=Thinopyrum elongatum OX=4588 GN=ESI3 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.7e-16
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 14 MGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAVYVLV 67
          MGSAT LEV+LA+ +PP+GVFLRY +G+EFWI LLLT LGY+PGI+YAVYVLV
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

[Close]

BLAST of MS019674 vs. ExPASy Swiss-Prot
Match: P68179 (Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.7e-16
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 14 MGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAVYVLV 67
          MGSAT LEV+LA+ +PP+GVFLRY +G+EFWI LLLT LGY+PGI+YAVYVLV
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

[Close]

BLAST of MS019674 vs. ExPASy Swiss-Prot
Match: Q9ZNQ7 (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.4e-14
Identity = 33/52 (63.46%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 14 MGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAVYVL 66
          M +ATF+++++A+ +PPLGVFLR+G G+EFWI L+LT LGY+PGI+YA+YVL
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

[Close]

BLAST of MS019674 vs. ExPASy Swiss-Prot
Match: Q9FE70 (UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana OX=3702 GN=At1g57550 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.5e-13
Identity = 35/52 (67.31%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 14 MGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAVYVL 66
          MGS  FLEVL A+FIPP+GVFLRYG+G+EFW+ LLLT   ++PG++YA+YVL
Sbjct: 1  MGS--FLEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVL 50

[Close]

BLAST of MS019674 vs. ExPASy TrEMBL
Match: A0A6J1CX15 (low temperature-induced protein lt101.2-like OS=Momordica charantia OX=3673 GN=LOC111015073 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.9e-26
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 5  MQGDRIPKRMGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAVYV 64
          MQGDRIPKRMGSATFLEVLLAVFIPPLGVFLRYGIGIEFWI LLLTFLGYLPGIVYAVYV
Sbjct: 1  MQGDRIPKRMGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIALLLTFLGYLPGIVYAVYV 60

Query: 65 LVGMR 70
          LVGMR
Sbjct: 61 LVGMR 65

[Close]

BLAST of MS019674 vs. ExPASy TrEMBL
Match: A0A6J1KU26 (low temperature-induced protein lt101.2-like OS=Cucurbita maxima OX=3661 GN=LOC111498668 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-24
Identity = 57/64 (89.06%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 5  MQGDRIPKRMGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAVYV 64
          MQG+RIPKRMGSATF+EVL+A+FIPPLGVFLRYGIG+EFWIDL+LTFLGYLPGI+YAVYV
Sbjct: 1  MQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYV 60

Query: 65 LVGM 69
          LVGM
Sbjct: 61 LVGM 64

[Close]

BLAST of MS019674 vs. ExPASy TrEMBL
Match: A0A6J1G1E1 (low temperature-induced protein lt101.2-like OS=Cucurbita moschata OX=3662 GN=LOC111449786 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-24
Identity = 57/64 (89.06%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 5  MQGDRIPKRMGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAVYV 64
          MQG+RIPKRMGSATF+EVL+A+FIPPLGVFLRYGIG+EFWIDL+LTFLGYLPGI+YAVYV
Sbjct: 1  MQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYV 60

Query: 65 LVGM 69
          LVGM
Sbjct: 61 LVGM 64

[Close]

BLAST of MS019674 vs. ExPASy TrEMBL
Match: A0A1S3B667 (low temperature-induced protein lt101.2-like OS=Cucumis melo OX=3656 GN=LOC103486456 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.6e-23
Identity = 56/67 (83.58%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 3  GQMQGDRIPKRMGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAV 62
          G  Q DRIPKRMGSATF+EVLLA+FIPP+GVFLRYGIGIEFWIDL+LTF GY+PGIVYAV
Sbjct: 3  GAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYIPGIVYAV 62

Query: 63 YVLVGMR 70
          YVL+G R
Sbjct: 63 YVLIGTR 69

[Close]

BLAST of MS019674 vs. ExPASy TrEMBL
Match: A0A0A0LAU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736860 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.6e-23
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 3  GQMQGDRIPKRMGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAV 62
          G  Q DRIPKRMGSATF+EVLLA+FIPP+GVFLRYGIGIEFWIDL+LTF GY+PGI+YAV
Sbjct: 3  GGGQVDRIPKRMGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYIPGIIYAV 62

Query: 63 YVLVGMR 70
          YVL+G R
Sbjct: 63 YVLIGTR 69

[Close]

BLAST of MS019674 vs. TAIR 10
Match: AT2G38905.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 89.0 bits (219), Expect = 1.7e-18
Identity = 40/54 (74.07%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 14 MGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAVYVLVG 68
          MGS TFLE++LA+ +PP+GVFLRYG G+EFWI LLLT LGY+PGI+YA+YVLVG
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MS019674 vs. TAIR 10
Match: AT3G05880.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-15
Identity = 33/52 (63.46%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 14 MGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAVYVL 66
          M +ATF+++++A+ +PPLGVFLR+G G+EFWI L+LT LGY+PGI+YA+YVL
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

[Close]

BLAST of MS019674 vs. TAIR 10
Match: AT1G57550.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 75.1 bits (183), Expect = 2.5e-14
Identity = 35/52 (67.31%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 14 MGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAVYVL 66
          MGS  FLEVL A+FIPP+GVFLRYG+G+EFW+ LLLT   ++PG++YA+YVL
Sbjct: 1  MGS--FLEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVL 50

[Close]

BLAST of MS019674 vs. TAIR 10
Match: AT3G05890.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 73.6 bits (179), Expect = 7.2e-14
Identity = 31/52 (59.62%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 14 MGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIDLLLTFLGYLPGIVYAVYVL 66
          M +ATF+E++LA+ +PPLGVFL++G  +EFWI L+LT  GYLPGI+YA+Y++
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYII 52

[Close]

BLAST of MS019674 vs. TAIR 10
Match: AT4G30650.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 54.7 bits (130), Expect = 3.5e-08
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 19 FLEVLLAVFIPPLGVFLRYG-IGIEFWIDLLLTFLGYLPGIVYAVYVLV 67
          F E+L+A+ +PPLGV L+ G   +EF I L+LT LGY+PGI+YA+YV+V
Sbjct: 8  FCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIV 56

The following BLAST results are available for this feature:

BLAST of MS019674 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145681.1	1.0e-25	98.46	low temperature-induced protein lt101.2-like [Momordica charantia]	[more]
XP_022945600.1	3.2e-24	89.06	low temperature-induced protein lt101.2-like [Cucurbita moschata] >XP_023005767....	[more]
XP_038906189.1	5.5e-24	89.23	low temperature-induced protein lt101.2-like [Benincasa hispida]	[more]
XP_008442650.1	1.4e-22	83.58	PREDICTED: low temperature-induced protein lt101.2-like [Cucumis melo]	[more]
XP_004137807.1	1.8e-22	82.09	low temperature-induced protein lt101.2 [Cucumis sativus] >KGN58938.1 hypothetic...	[more]

BLAST of MS019674 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ARD5	4.4e-16	73.58	Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE...	[more]
P68178	5.7e-16	75.47	Salt stress-induced hydrophobic peptide ESI3 OS=Thinopyrum elongatum OX=4588 GN=...	[more]
P68179	5.7e-16	75.47	Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE...	[more]
Q9ZNQ7	2.4e-14	63.46	Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1	[more]
Q9FE70	3.5e-13	67.31	UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana OX=3702 GN=At1g57550 ...	[more]

BLAST of MS019674 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CX15	4.9e-26	98.46	low temperature-induced protein lt101.2-like OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1KU26	1.6e-24	89.06	low temperature-induced protein lt101.2-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1G1E1	1.6e-24	89.06	low temperature-induced protein lt101.2-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A1S3B667	6.6e-23	83.58	low temperature-induced protein lt101.2-like OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A0A0LAU7	8.6e-23	82.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736860 PE=3 SV=1	[more]

BLAST of MS019674 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38905.1	1.7e-18	74.07	Low temperature and salt responsive protein family	[more]
AT3G05880.1	1.7e-15	63.46	Low temperature and salt responsive protein family	[more]
AT1G57550.1	2.5e-14	67.31	Low temperature and salt responsive protein family	[more]
AT3G05890.1	7.2e-14	59.62	Low temperature and salt responsive protein family	[more]
AT4G30650.1	3.5e-08	57.14	Low temperature and salt responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PFAM	PF01679	Pmp3	coord: 19..66 e-value: 1.0E-18 score: 67.2
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 14..66
IPR000612	Proteolipid membrane potential modulator	PROSITE	PS01309	UPF0057	coord: 23..38
None	No IPR available	PANTHER	PTHR21659:SF65	OS03G0286900 PROTEIN	coord: 14..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019674.1	MS019674.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane