MS019650 (gene) Bitter gourd (TR) v1

Overview


Name	MS019650
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	29 kDa ribonucleoprotein, chloroplastic-like
Location	scaffold729: 1269770 .. 1271079 (+)
RNA-Seq Expression	MS019650
Synteny	MS019650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGCCTCTGCAACTTCCCTTGCTCTCTCATCTCTAACCCCCAAAACCCTATCCCTTTCGAACCCTAGAATCAAATTGTTCTCTCTCAATCCCTCTTCAATCCGCCTTCTTTCCAACTCCATTTCCATTTCTGCTTTCGCCGTTCGTTCTGATAGGCCTTCTCCGGCCTTATCTTCTCGGTTCATCAGAAATGTCGCCGTCTCTTCCGATTTCGACCAGGAGGAAGACGTCCTTGAGGACAGTGGGGACGACCGCAGCTACGCTCCTGACCTCAAACTCTTCGTCGGAAATCTTCCTTTCAGCGTCGACAGTGCCCAGCTCGCCGGCTTGTTCGAGAGCGCCGGAGAAGTTGAAAGAGTCGAGGTACTTCGCGATTCCTAGTTTTACTCTGAGTTGCATTAGACCATGAAAGGGGCTGGAGGGATTAGAGAGACTCATTTGCTTGCCCTAATTTTCTTAATTTAATGGTGTTTTTTTAAGGTAATTTACGACAAGACGACAGGACGAAGCAGGGGATTTGGTTTTGTCACGATGTCGAATGCTGATGCCGTCGAAGCAGCTGCTGAACAATTTAATGGCTATGTAAGTGGCTATACTTGCATCAACACCAACTTAATAGTTAATACTCTGCGACGCTGCTTTTGTTTGTGCTTCACTTTCTATTTGGAAATTCAATTGCTGTTTCCCAAATAACAGAAAGTTATAATTCATCTTTCCCATGATATTACTGCCTCAAATGCTATACACTAAATTTTGGACGAACAAACTTTATGTTTGTTGTTACAAAGAACCAATCCTAGTGAGTTGCACGATCTTATTTTGTGGGGAAAAATTTCTGTAGGGTTTATCTGCTTTCATGGTCTTTCTTCAGGAATGAATTTAATTTAGGGCTAAAAGTTCCATAGATTTGCCTTTCTGATCCAGTGACGTACTACATATTTGATTTTATTTAAAAACAGATTTATTGTATTTTCTTTTAATAGATGATTCCTGATTATAACCTCTTACAGGAACTCGATGGTAGAGCATTGAGGGTAAATTATGGGCCCCCTCCACCAAAAAAGGATAATTTCTCTTTCACAGGGTCCAGAAATGCTTCAAACTTCAGTAATCCCAATCGTATTCATGTGAGTAATCTTGCTTGGGGTGTCGATGATTTTGCACTGGGGAACTTGTTTAGGGAACATGGAAATGTTGTTGAAGCAAAAGTAGTTTGCGACCGGGACAGCGGAAGATCTAGGGGCTTCGGTTTTGTAACTTATAGTTCTGCGGTGGAAGTTAACAATGCCATTGAGGCCTTGAATGGA

mRNA sequence

ATGACTGCCTCTGCAACTTCCCTTGCTCTCTCATCTCTAACCCCCAAAACCCTATCCCTTTCGAACCCTAGAATCAAATTGTTCTCTCTCAATCCCTCTTCAATCCGCCTTCTTTCCAACTCCATTTCCATTTCTGCTTTCGCCGTTCGTTCTGATAGGCCTTCTCCGGCCTTATCTTCTCGGTTCATCAGAAATGTCGCCGTCTCTTCCGATTTCGACCAGGAGGAAGACGTCCTTGAGGACAGTGGGGACGACCGCAGCTACGCTCCTGACCTCAAACTCTTCGTCGGAAATCTTCCTTTCAGCGTCGACAGTGCCCAGCTCGCCGGCTTGTTCGAGAGCGCCGGAGAAGTTGAAAGAGTCGAGGTAATTTACGACAAGACGACAGGACGAAGCAGGGGATTTGGTTTTGTCACGATGTCGAATGCTGATGCCGTCGAAGCAGCTGCTGAACAATTTAATGGCTATGAACTCGATGGTAGAGCATTGAGGGTAAATTATGGGCCCCCTCCACCAAAAAAGGATAATTTCTCTTTCACAGGGTCCAGAAATGCTTCAAACTTCAGTAATCCCAATCGTATTCATGTGAGTAATCTTGCTTGGGGTGTCGATGATTTTGCACTGGGGAACTTGTTTAGGGAACATGGAAATGTTGTTGAAGCAAAAGTAGTTTGCGACCGGGACAGCGGAAGATCTAGGGGCTTCGGTTTTGTAACTTATAGTTCTGCGGTGGAAGTTAACAATGCCATTGAGGCCTTGAATGGA

Coding sequence (CDS)

ATGACTGCCTCTGCAACTTCCCTTGCTCTCTCATCTCTAACCCCCAAAACCCTATCCCTTTCGAACCCTAGAATCAAATTGTTCTCTCTCAATCCCTCTTCAATCCGCCTTCTTTCCAACTCCATTTCCATTTCTGCTTTCGCCGTTCGTTCTGATAGGCCTTCTCCGGCCTTATCTTCTCGGTTCATCAGAAATGTCGCCGTCTCTTCCGATTTCGACCAGGAGGAAGACGTCCTTGAGGACAGTGGGGACGACCGCAGCTACGCTCCTGACCTCAAACTCTTCGTCGGAAATCTTCCTTTCAGCGTCGACAGTGCCCAGCTCGCCGGCTTGTTCGAGAGCGCCGGAGAAGTTGAAAGAGTCGAGGTAATTTACGACAAGACGACAGGACGAAGCAGGGGATTTGGTTTTGTCACGATGTCGAATGCTGATGCCGTCGAAGCAGCTGCTGAACAATTTAATGGCTATGAACTCGATGGTAGAGCATTGAGGGTAAATTATGGGCCCCCTCCACCAAAAAAGGATAATTTCTCTTTCACAGGGTCCAGAAATGCTTCAAACTTCAGTAATCCCAATCGTATTCATGTGAGTAATCTTGCTTGGGGTGTCGATGATTTTGCACTGGGGAACTTGTTTAGGGAACATGGAAATGTTGTTGAAGCAAAAGTAGTTTGCGACCGGGACAGCGGAAGATCTAGGGGCTTCGGTTTTGTAACTTATAGTTCTGCGGTGGAAGTTAACAATGCCATTGAGGCCTTGAATGGA

Protein sequence

MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNSISISAFAVRSDRPSPALSSRFIRNVAVSSDFDQEEDVLEDSGDDRSYAPDLKLFVGNLPFSVDSAQLAGLFESAGEVERVEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPPKKDNFSFTGSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVCDRDSGRSRGFGFVTYSSAVEVNNAIEALNG

Homology

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BLAST of MS019650 vs. NCBI nr
Match: XP_022144753.1 (29 kDa ribonucleoprotein A, chloroplastic-like [Momordica charantia])

HSP 1 Score: 487.3 bits (1253), Expect = 8.3e-134
Identity = 253/255 (99.22%), Postives = 253/255 (99.22%), Query Frame = 0


Query: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNSISISAFAVRSDRPSPALSS 60
           MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNSISISAFAVRSDRPSPA SS
Sbjct: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNSISISAFAVRSDRPSPAFSS 60

Query: 61  RFIRNVAVSSDFDQEEDVLEDSGDDRSYAPDLKLFVGNLPFSVDSAQLAGLFESAGEVER 120
           RFIRNVAVSSDFDQEEDVLEDSGDDRSYA DLKLFVGNLPFSVDSAQLAGLFESAGEVER
Sbjct: 61  RFIRNVAVSSDFDQEEDVLEDSGDDRSYASDLKLFVGNLPFSVDSAQLAGLFESAGEVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPPKKDNFSFT 180
           VEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPPKKDNFSFT
Sbjct: 121 VEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPPKKDNFSFT 180

Query: 181 GSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVCDRDSGRSRGFGFVTY 240
           GSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVCDRDSGRSRGFGFVTY
Sbjct: 181 GSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVCDRDSGRSRGFGFVTY 240

Query: 241 SSAVEVNNAIEALNG 256
           SSAVEVNNAIEALNG
Sbjct: 241 SSAVEVNNAIEALNG 255

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BLAST of MS019650 vs. NCBI nr
Match: XP_038905951.1 (29 kDa ribonucleoprotein A, chloroplastic [Benincasa hispida])

HSP 1 Score: 397.1 bits (1019), Expect = 1.1e-106
Identity = 203/255 (79.61%), Postives = 227/255 (89.02%), Query Frame = 0


Query: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNSISISAFAVRSDRPSPALSS 60
           M+ASA SL LS+LT KTLSLSNP+IKLFSLNPSS RLLSN  SIS+  +RS R SP  SS
Sbjct: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFSS 60

Query: 61  RFIRNVAVSSDFDQEEDVLEDSGDDRSYAPDLKLFVGNLPFSVDSAQLAGLFESAGEVER 120
           RF+RNVAVSSD+DQEED LE   ++ SYAPDLKLFVGNLPFSVDSAQLAGLFESAG+VER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPPKKDNFSFT 180
           VEVIYDKTTGRSRGFGFVTMS+ D VEAAA+QFNGYELDGR+LRVNYGPPPP++D+ SF 
Sbjct: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSFR 180

Query: 181 GSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVCDRDSGRSRGFGFVTY 240
           GSRNAS F NPNR+HVSNLAWGVDD  L NLFREHGNVVEAKVV DR+SG+SRGFGFVT+
Sbjct: 181 GSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVTF 240

Query: 241 SSAVEVNNAIEALNG 256
           +SA EVNNAI++L+G
Sbjct: 241 NSAEEVNNAIQSLDG 255

[Close]

BLAST of MS019650 vs. NCBI nr
Match: XP_022935639.1 (29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >XP_022935646.1 29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 386.7 bits (992), Expect = 1.5e-103
Identity = 200/255 (78.43%), Postives = 219/255 (85.88%), Query Frame = 0


Query: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNSISISAFAVRSDRPSPALSS 60
           M ASAT L LSSLTPKTLS SNP+ +LFSLNPSSI   SN ISISA  +RSDR SPA  S
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60

Query: 61  RFIRNVAVSSDFDQEEDVLEDSGDDRSYAPDLKLFVGNLPFSVDSAQLAGLFESAGEVER 120
           RF+RNVAVSSDFDQEEDVL+  GDD SYAPDL+LFVGNLPF++DSAQLAGLFESAG+VER
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPPKKDNFSFT 180
           VEVIYDK TGRSRGFGFVTMSN    EAAA+QFNGYEL+GR LRVNYGPPPPK+D+ SF 
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180

Query: 181 GSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVCDRDSGRSRGFGFVTY 240
            S+NAS F N N +HVSNLAWGVDD  L NLFRE GNVV+AKVV DRDSGRSRGFGFVTY
Sbjct: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240

Query: 241 SSAVEVNNAIEALNG 256
           SSA EVNNAI++L+G
Sbjct: 241 SSAEEVNNAIQSLDG 255

[Close]

BLAST of MS019650 vs. NCBI nr
Match: XP_023538708.1 (29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 385.6 bits (989), Expect = 3.4e-103
Identity = 200/255 (78.43%), Postives = 218/255 (85.49%), Query Frame = 0


Query: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNSISISAFAVRSDRPSPALSS 60
           M ASAT L LSSLTPKTLS SNP+  LFSLNPSSI   SN ISISA  +RSDR SPA  S
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFGLFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60

Query: 61  RFIRNVAVSSDFDQEEDVLEDSGDDRSYAPDLKLFVGNLPFSVDSAQLAGLFESAGEVER 120
           RF+RNVAVSSDFDQEEDVL+  GDD SYAPDL+LFVGNLPF++DSAQLAGLFESAG+VER
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPPKKDNFSFT 180
           VEVIYDK TGRSRGFGFVTMSN    EAAA+QFNGYEL+GR LRVNYGPPPPK+D+ SF 
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180

Query: 181 GSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVCDRDSGRSRGFGFVTY 240
            S+NAS F N N +HVSNLAWGVDD  L NLFRE GNVV+AKVV DRDSGRSRGFGFVTY
Sbjct: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240

Query: 241 SSAVEVNNAIEALNG 256
           SSA EVNNAI++L+G
Sbjct: 241 SSAEEVNNAIQSLDG 255

[Close]

BLAST of MS019650 vs. NCBI nr
Match: KAG6596475.1 (RNA-binding protein CP29B, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 384.4 bits (986), Expect = 7.5e-103
Identity = 199/255 (78.04%), Postives = 218/255 (85.49%), Query Frame = 0


Query: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNSISISAFAVRSDRPSPALSS 60
           M ASAT L LSSLTPKTLS SNP+ +LFSLNPSSI   SN ISISA  +RSDR SPA  S
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60

Query: 61  RFIRNVAVSSDFDQEEDVLEDSGDDRSYAPDLKLFVGNLPFSVDSAQLAGLFESAGEVER 120
           RF+ NVAVSSDFDQEEDVL+  GDD SYAPDL+LFVGNLPF++DSAQLAGLFESAG+VER
Sbjct: 61  RFVSNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPPKKDNFSFT 180
           VEVIYDK TGRSRGFGFVTMSN    EAAA+QFNGYEL+GR LRVNYGPPPPK+D+ SF 
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180

Query: 181 GSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVCDRDSGRSRGFGFVTY 240
            S+NAS F N N +HVSNLAWGVDD  L NLFRE GNVV+AKVV DRDSGRSRGFGFVTY
Sbjct: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240

Query: 241 SSAVEVNNAIEALNG 256
           SSA EVNNAI++L+G
Sbjct: 241 SSAEEVNNAIQSLDG 255

[Close]

BLAST of MS019650 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.2e-74
Identity = 166/265 (62.64%), Postives = 191/265 (72.08%), Query Frame = 0


Query: 1   MTASATSLALSSLTPKTLSLSNP-----RIKLFSLNPSSIRLLSNSISISAFAVRSDRPS 60
           M +SA+SL   SLTP+TL L  P      +  FSL PSS+ L   S+S S         S
Sbjct: 1   MASSASSLHFLSLTPQTLPLPKPTSQTTSLSFFSLPPSSLNL---SLSSS---------S 60

Query: 61  PALSSRFIRNVAVSSDFDQEEDVLEDSGD----DRSYAPDLKLFVGNLPFSVDSAQLAGL 120
              SSRF+R V + SDFDQ EDV ED  D    +R+++PDLK+FVGNLPFS DSA LA L
Sbjct: 61  SCFSSRFVRKVTL-SDFDQIEDV-EDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAEL 120

Query: 121 FESAGEVERVEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPP 180
           FE AG VE VEVIYDK TGRSRGFGFVTMS+ + VEAA +QFNGYELDGRALRVN GPPP
Sbjct: 121 FERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPP 180

Query: 181 PKKDNFSFT-GSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVCDRDSG 240
            K++N SF  GSR   +F + NR++V NLAWGVD  AL  LF E G VV+AKVV DRDSG
Sbjct: 181 EKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSG 240

Query: 241 RSRGFGFVTYSSAVEVNNAIEALNG 256
           RSRGFGFVTYSSA EVNNAIE+L+G
Sbjct: 241 RSRGFGFVTYSSAEEVNNAIESLDG 251

[Close]

BLAST of MS019650 vs. ExPASy Swiss-Prot
Match: P49313 (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 6.5e-73
Identity = 162/270 (60.00%), Postives = 189/270 (70.00%), Query Frame = 0


Query: 1   MTASATSLALSSLTPKTLSLSNP-----RIKLFSLNPSSIRLLSNSISISAFAVRSDRPS 60
           M +SA+SL   SLTP+TL L  P      +  FSL PSS+ L  +S            PS
Sbjct: 1   MASSASSLHFLSLTPQTLLLPKPTSQTTSLSFFSLPPSSLNLSLSS------------PS 60

Query: 61  PALSSRFIRNVAVSSDFDQEEDVLE-DSG--DDRSYAPDLKLFVGNLPFSVDSAQLAGLF 120
              SSRF+R V +  DFDQ EDV + D G  ++R+++PDLK+FVGNL FS DSA LA LF
Sbjct: 61  SCFSSRFVRKVTL-PDFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELF 120

Query: 121 ESAGEVERVEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPP 180
           E AG VE VEVIYDK TGRSRGFGFVTMS+ + VEAA +QFNGYELDGRALRVN GPPP 
Sbjct: 121 ERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPE 180

Query: 181 KKDNFSFT-------GSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVC 240
           K++N SF        GSR   +F + NR++V NLAWGVD  AL  LF E G VV+AKVV 
Sbjct: 181 KRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVY 240

Query: 241 DRDSGRSRGFGFVTYSSAVEVNNAIEALNG 256
           DRDSGRSRGFGFVTYSSA EVNNAIE+L+G
Sbjct: 241 DRDSGRSRGFGFVTYSSAEEVNNAIESLDG 257

[Close]

BLAST of MS019650 vs. ExPASy Swiss-Prot
Match: Q9ZUU4 (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 4.6e-71
Identity = 156/270 (57.78%), Postives = 191/270 (70.74%), Query Frame = 0


Query: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNSISISAFAVRSDRPSPALSS 60
           M ASA+SLALSS  PK+L     R    SL   S+    NS S+S F++ +   SPA  S
Sbjct: 1   MAASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVS-FSIAAKWNSPA--S 60

Query: 61  RFIRNVAVSSDFDQEEDVLEDSG--DDRSYAPDLKLFVGNLPFSVDSAQLAGLFESAGEV 120
           RF RNVA++S+F+ EED   D     ++S++ DLKLFVGNLPF+VDSAQLA LFESAG V
Sbjct: 61  RFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNV 120

Query: 121 ERVEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPPKKDNFS 180
           E VEVIYDK TGRSRGFGFVTMS+   VEAAA+QFNGYELDGR LRVN GPPPPK+++  
Sbjct: 121 EMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGF 180

Query: 181 FTGSRNA-------------SNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVC 240
             G R++             S   + NR++V NL+WGVDD AL +LF E G VVEA+V+ 
Sbjct: 181 SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIY 240

Query: 241 DRDSGRSRGFGFVTYSSAVEVNNAIEALNG 256
           DRDSGRS+GFGFVTY S+ EV NAI++L+G
Sbjct: 241 DRDSGRSKGFGFVTYDSSQEVQNAIKSLDG 267

[Close]

BLAST of MS019650 vs. ExPASy Swiss-Prot
Match: Q08937 (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.8e-65
Identity = 151/276 (54.71%), Postives = 184/276 (66.67%), Query Frame = 0


Query: 2   TASATSLALSSLTPKTLSLSNPR--IKLFSLNPSSIRLLSNSISISAFAVRSDRPSPALS 61
           ++S +SL    +TP+T S   P   +  FSL  SS+ L   S+S S+  + S +P     
Sbjct: 3   SSSVSSLQFLFVTPQTPSSLKPNSTLSFFSLPSSSLNL---SLSSSSTGLCSIKP---FE 62

Query: 62  SRFIRNVAVSSDFDQEEDVLEDSGDDRSYAPDLKLFVGNLPFSVDSAQLAGLFESAGEVE 121
           S F   VA+S  FDQ ED +E +   R ++ DLKLFVGNLPFSVDSA LAGLFE AG VE
Sbjct: 63  SSFSTRVALSG-FDQLEDDVEVAEQPR-FSEDLKLFVGNLPFSVDSAALAGLFERAGNVE 122

Query: 122 RVEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPPKKDNFSF 181
            VEVIYDK TGRSRGFGFVTMS  + VEAA +QFNGYE+DGRA+RVN GP P K++N SF
Sbjct: 123 MVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSF 182

Query: 182 TGSRNAS--------------------NFSNPNRIHVSNLAWGVDDFALGNLFREHGNVV 241
            G R  +                    +  + NR++V NL+WGVDD AL  LF E GNVV
Sbjct: 183 GGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV 242

Query: 242 EAKVVCDRDSGRSRGFGFVTYSSAVEVNNAIEALNG 256
           +AKVV DRDSGRSRGFGFVTYSS+ EVN+AI++LNG
Sbjct: 243 DAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNG 270

[Close]

BLAST of MS019650 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.1e-64
Identity = 152/273 (55.68%), Postives = 182/273 (66.67%), Query Frame = 0


Query: 3   ASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNSISISAFAVRSDRPSPALSSRF 62
           +S   L ++S TP +L   N  +  FSL  SS+ L  +S SI   A  S +P     S F
Sbjct: 7   SSLQFLFVTSQTPSSLK-PNSTLSFFSLPSSSLNLSLSSSSIGHSA--SIKP---FESSF 66

Query: 63  IRNVAVSSDFDQEEDVLEDSGDDRSYAPDLKLFVGNLPFSVDSAQLAGLFESAGEVERVE 122
              VA+ SDFDQ ED +E +   R ++ DLKLFVGNLPFSVDSA LAGLFE AG VE VE
Sbjct: 67  STRVAL-SDFDQLEDDVEVAEQPR-FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVE 126

Query: 123 VIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPPKKDNFSFTGS 182
           VIYDK +GRSRGFGFVTMS  + VEAA +QFNGYE+DGRA+RVN GP P K++N SF G 
Sbjct: 127 VIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGG 186

Query: 183 RNAS--------------------NFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAK 242
           R  +                    +  + NR++V NL+WGVDD AL  LF E GNVV+AK
Sbjct: 187 RGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAK 246

Query: 243 VVCDRDSGRSRGFGFVTYSSAVEVNNAIEALNG 256
           VV DRDSGRSRGFGFVTYSSA EVN+AI++LNG
Sbjct: 247 VVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNG 271

[Close]

BLAST of MS019650 vs. ExPASy TrEMBL
Match: A0A6J1CU52 (29 kDa ribonucleoprotein A, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111014367 PE=4 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 4.0e-134
Identity = 253/255 (99.22%), Postives = 253/255 (99.22%), Query Frame = 0


Query: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNSISISAFAVRSDRPSPALSS 60
           MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNSISISAFAVRSDRPSPA SS
Sbjct: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNSISISAFAVRSDRPSPAFSS 60

Query: 61  RFIRNVAVSSDFDQEEDVLEDSGDDRSYAPDLKLFVGNLPFSVDSAQLAGLFESAGEVER 120
           RFIRNVAVSSDFDQEEDVLEDSGDDRSYA DLKLFVGNLPFSVDSAQLAGLFESAGEVER
Sbjct: 61  RFIRNVAVSSDFDQEEDVLEDSGDDRSYASDLKLFVGNLPFSVDSAQLAGLFESAGEVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPPKKDNFSFT 180
           VEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPPKKDNFSFT
Sbjct: 121 VEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPPKKDNFSFT 180

Query: 181 GSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVCDRDSGRSRGFGFVTY 240
           GSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVCDRDSGRSRGFGFVTY
Sbjct: 181 GSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVCDRDSGRSRGFGFVTY 240

Query: 241 SSAVEVNNAIEALNG 256
           SSAVEVNNAIEALNG
Sbjct: 241 SSAVEVNNAIEALNG 255

[Close]

BLAST of MS019650 vs. ExPASy TrEMBL
Match: A0A6J1F601 (29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442435 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 7.4e-104
Identity = 200/255 (78.43%), Postives = 219/255 (85.88%), Query Frame = 0


Query: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNSISISAFAVRSDRPSPALSS 60
           M ASAT L LSSLTPKTLS SNP+ +LFSLNPSSI   SN ISISA  +RSDR SPA  S
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60

Query: 61  RFIRNVAVSSDFDQEEDVLEDSGDDRSYAPDLKLFVGNLPFSVDSAQLAGLFESAGEVER 120
           RF+RNVAVSSDFDQEEDVL+  GDD SYAPDL+LFVGNLPF++DSAQLAGLFESAG+VER
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPPKKDNFSFT 180
           VEVIYDK TGRSRGFGFVTMSN    EAAA+QFNGYEL+GR LRVNYGPPPPK+D+ SF 
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180

Query: 181 GSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVCDRDSGRSRGFGFVTY 240
            S+NAS F N N +HVSNLAWGVDD  L NLFRE GNVV+AKVV DRDSGRSRGFGFVTY
Sbjct: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240

Query: 241 SSAVEVNNAIEALNG 256
           SSA EVNNAI++L+G
Sbjct: 241 SSAEEVNNAIQSLDG 255

[Close]

BLAST of MS019650 vs. ExPASy TrEMBL
Match: A0A5A7TQA3 (29 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002580 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 6.2e-103
Identity = 202/255 (79.22%), Postives = 219/255 (85.88%), Query Frame = 0


Query: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNSISISAFAVRSDRPSPALSS 60
           M+ASA SL LSSLT KTLSLSNP+ KLFSLNPSS   L N ISIS+F + S R S   SS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFIRNVAVSSDFDQEEDVLEDSGDDRSYAPDLKLFVGNLPFSVDSAQLAGLFESAGEVER 120
           RF+RNVAVSSD+DQEED LE  GDD  YAPDLKLFVGNLPFSVDSAQLAGLFESAG+VER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPPKKDNFSFT 180
           VEVIYDKTTG+SRGFGFVTMS  D VEAAA+QFNGYELDGR+LRVNYG PPPK+D+  F 
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180

Query: 181 GSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVCDRDSGRSRGFGFVTY 240
           GSRNAS F N NR+HVSNLAWGVDD  L NLFREHGNV+EAKVV DRDSGRSRGFGFVTY
Sbjct: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240

Query: 241 SSAVEVNNAIEALNG 256
           +SA EVNNAI++LNG
Sbjct: 241 NSAEEVNNAIQSLNG 254

[Close]

BLAST of MS019650 vs. ExPASy TrEMBL
Match: A0A1S3B5S7 (29 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486484 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 6.2e-103
Identity = 202/255 (79.22%), Postives = 219/255 (85.88%), Query Frame = 0


Query: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNSISISAFAVRSDRPSPALSS 60
           M+ASA SL LSSLT KTLSLSNP+ KLFSLNPSS   L N ISIS+F + S R S   SS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFIRNVAVSSDFDQEEDVLEDSGDDRSYAPDLKLFVGNLPFSVDSAQLAGLFESAGEVER 120
           RF+RNVAVSSD+DQEED LE  GDD  YAPDLKLFVGNLPFSVDSAQLAGLFESAG+VER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPPKKDNFSFT 180
           VEVIYDKTTG+SRGFGFVTMS  D VEAAA+QFNGYELDGR+LRVNYG PPPK+D+  F 
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180

Query: 181 GSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVCDRDSGRSRGFGFVTY 240
           GSRNAS F N NR+HVSNLAWGVDD  L NLFREHGNV+EAKVV DRDSGRSRGFGFVTY
Sbjct: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240

Query: 241 SSAVEVNNAIEALNG 256
           +SA EVNNAI++LNG
Sbjct: 241 NSAEEVNNAIQSLNG 254

[Close]

BLAST of MS019650 vs. ExPASy TrEMBL
Match: A0A0A0LAY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 6.9e-102
Identity = 201/256 (78.52%), Postives = 219/256 (85.55%), Query Frame = 0


Query: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNP-SSIRLLSNSISISAFAVRSDRPSPALS 60
           M+ASA SL L SLT KTLS SNP+ KLFSLNP SSIRLLSN ISIS+F + S R SP  S
Sbjct: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60

Query: 61  SRFIRNVAVSSDFDQEEDVLEDSGDDRSYAPDLKLFVGNLPFSVDSAQLAGLFESAGEVE 120
           SRF+RNVAVSSD+ QEE  LE  GDD SYAPDLKLFVGNLPF+VDSAQLAGLFESAG+VE
Sbjct: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPPKKDNFSF 180
           RVEVIYDKTTGRSRGFGFVTMS    VEAAA+QFNGYELDGR LRVNYGPPPPK+D+ SF
Sbjct: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180

Query: 181 TGSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVCDRDSGRSRGFGFVT 240
            GSRNAS F N NR+HVSNLAWGVDD  L NLFRE GNV+EAKVV DRDSG+SRGFGFVT
Sbjct: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240

Query: 241 YSSAVEVNNAIEALNG 256
           Y+SA EVN AI++L+G
Sbjct: 241 YNSAEEVNEAIQSLDG 256

[Close]

BLAST of MS019650 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 269.2 bits (687), Expect = 3.3e-72
Identity = 156/270 (57.78%), Postives = 191/270 (70.74%), Query Frame = 0


Query: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNSISISAFAVRSDRPSPALSS 60
           M ASA+SLALSS  PK+L     R    SL   S+    NS S+S F++ +   SPA  S
Sbjct: 1   MAASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVS-FSIAAKWNSPA--S 60

Query: 61  RFIRNVAVSSDFDQEEDVLEDSG--DDRSYAPDLKLFVGNLPFSVDSAQLAGLFESAGEV 120
           RF RNVA++S+F+ EED   D     ++S++ DLKLFVGNLPF+VDSAQLA LFESAG V
Sbjct: 61  RFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNV 120

Query: 121 ERVEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPPPKKDNFS 180
           E VEVIYDK TGRSRGFGFVTMS+   VEAAA+QFNGYELDGR LRVN GPPPPK+++  
Sbjct: 121 EMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGF 180

Query: 181 FTGSRNA-------------SNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVC 240
             G R++             S   + NR++V NL+WGVDD AL +LF E G VVEA+V+ 
Sbjct: 181 SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIY 240

Query: 241 DRDSGRSRGFGFVTYSSAVEVNNAIEALNG 256
           DRDSGRS+GFGFVTY S+ EV NAI++L+G
Sbjct: 241 DRDSGRSKGFGFVTYDSSQEVQNAIKSLDG 267

[Close]

BLAST of MS019650 vs. TAIR 10
Match: AT3G53460.1 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 243.0 bits (619), Expect = 2.5e-64
Identity = 157/322 (48.76%), Postives = 188/322 (58.39%), Query Frame = 0


Query: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNS---ISISAFAVRSDRPSPA 60
           M+ASA+S  LS+  PK+L L   R    S+ P S+    +S   +SI A +         
Sbjct: 1   MSASASS--LSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60

Query: 61  LSSRFIRNVAVSSDFDQEEDVLEDSGDD------RSYAPDLKLFVGNLPFSVDSAQLAGL 120
             SRF+RNVAVSSDF+ EED +   GDD       S++PDLKLFVGNL F+VDSAQLA L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 FESAGEVERVEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPP 180
           FESAG VE VEVIYDK TGRSRGFGFVTMS A  VEAAA+QFNGYE +GR LRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 180

Query: 181 PKK-DNFS---------------------------------------------------- 240
           PK+ ++FS                                                    
Sbjct: 181 PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGS 240

Query: 241 -----FTGSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVCDRDSGRSR 256
                 +GS + S   + NR++V NL+WGVDD AL NLF E G VVEA+V+ DRDSGRS+
Sbjct: 241 QRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 300

[Close]

BLAST of MS019650 vs. TAIR 10
Match: AT3G53460.2 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 243.0 bits (619), Expect = 2.5e-64
Identity = 157/322 (48.76%), Postives = 188/322 (58.39%), Query Frame = 0


Query: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNS---ISISAFAVRSDRPSPA 60
           M+ASA+S  LS+  PK+L L   R    S+ P S+    +S   +SI A +         
Sbjct: 1   MSASASS--LSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60

Query: 61  LSSRFIRNVAVSSDFDQEEDVLEDSGDD------RSYAPDLKLFVGNLPFSVDSAQLAGL 120
             SRF+RNVAVSSDF+ EED +   GDD       S++PDLKLFVGNL F+VDSAQLA L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 FESAGEVERVEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPP 180
           FESAG VE VEVIYDK TGRSRGFGFVTMS A  VEAAA+QFNGYE +GR LRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 180

Query: 181 PKK-DNFS---------------------------------------------------- 240
           PK+ ++FS                                                    
Sbjct: 181 PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGS 240

Query: 241 -----FTGSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVCDRDSGRSR 256
                 +GS + S   + NR++V NL+WGVDD AL NLF E G VVEA+V+ DRDSGRS+
Sbjct: 241 QRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 300

[Close]

BLAST of MS019650 vs. TAIR 10
Match: AT3G53460.3 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 243.0 bits (619), Expect = 2.5e-64
Identity = 157/322 (48.76%), Postives = 188/322 (58.39%), Query Frame = 0


Query: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNS---ISISAFAVRSDRPSPA 60
           M+ASA+S  LS+  PK+L L   R    S+ P S+    +S   +SI A +         
Sbjct: 1   MSASASS--LSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60

Query: 61  LSSRFIRNVAVSSDFDQEEDVLEDSGDD------RSYAPDLKLFVGNLPFSVDSAQLAGL 120
             SRF+RNVAVSSDF+ EED +   GDD       S++PDLKLFVGNL F+VDSAQLA L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 FESAGEVERVEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGYELDGRALRVNYGPPP 180
           FESAG VE VEVIYDK TGRSRGFGFVTMS A  VEAAA+QFNGYE +GR LRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 180

Query: 181 PKK-DNFS---------------------------------------------------- 240
           PK+ ++FS                                                    
Sbjct: 181 PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGS 240

Query: 241 -----FTGSRNASNFSNPNRIHVSNLAWGVDDFALGNLFREHGNVVEAKVVCDRDSGRSR 256
                 +GS + S   + NR++V NL+WGVDD AL NLF E G VVEA+V+ DRDSGRS+
Sbjct: 241 QRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 300

[Close]

BLAST of MS019650 vs. TAIR 10
Match: AT3G53460.4 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 230.7 bits (587), Expect = 1.3e-60
Identity = 157/343 (45.77%), Postives = 188/343 (54.81%), Query Frame = 0


Query: 1   MTASATSLALSSLTPKTLSLSNPRIKLFSLNPSSIRLLSNS---ISISAFAVRSDRPSPA 60
           M+ASA+S  LS+  PK+L L   R    S+ P S+    +S   +SI A +         
Sbjct: 1   MSASASS--LSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60

Query: 61  LSSRFIRNVAVSSDFDQEEDVLEDSGDD------RSYAPDLKLFVGNLPFSVDSAQLAGL 120
             SRF+RNVAVSSDF+ EED +   GDD       S++PDLKLFVGNL F+VDSAQLA L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 FESAGEVERVEVIYDKTTGRSRGFGFVTMSNADAVEAAAEQFNGY--------------- 180
           FESAG VE VEVIYDK TGRSRGFGFVTMS A  VEAAA+QFNGY               
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYVSRYLCSLLCLYLLI 180

Query: 181 ------ELDGRALRVNYGPPPPKK-DNFS------------------------------- 240
                 E +GR LRVN GPPPPK+ ++FS                               
Sbjct: 181 RVLCGLEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGG 240

Query: 241 --------------------------FTGSRNASNFSNPNRIHVSNLAWGVDDFALGNLF 256
                                      +GS + S   + NR++V NL+WGVDD AL NLF
Sbjct: 241 YGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLF 300

The following BLAST results are available for this feature:

BLAST of MS019650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144753.1	8.3e-134	99.22	29 kDa ribonucleoprotein A, chloroplastic-like [Momordica charantia]	[more]
XP_038905951.1	1.1e-106	79.61	29 kDa ribonucleoprotein A, chloroplastic [Benincasa hispida]	[more]
XP_022935639.1	1.5e-103	78.43	29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >XP_022935646....	[more]
XP_023538708.1	3.4e-103	78.43	29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
KAG6596475.1	7.5e-103	78.04	RNA-binding protein CP29B, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of MS019650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08935	1.2e-74	62.64	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
P49313	6.5e-73	60.00	30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]
Q9ZUU4	4.6e-71	57.78	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29...	[more]
Q08937	3.8e-65	54.71	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
P49314	1.1e-64	55.68	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]

BLAST of MS019650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CU52	4.0e-134	99.22	29 kDa ribonucleoprotein A, chloroplastic-like OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1F601	7.4e-104	78.43	29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A5A7TQA3	6.2e-103	79.22	29 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3B5S7	6.2e-103	79.22	29 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486484 ...	[more]
A0A0A0LAY6	6.9e-102	78.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1	[more]

BLAST of MS019650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37220.1	3.3e-72	57.78	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G53460.1	2.5e-64	48.76	chloroplast RNA-binding protein 29	[more]
AT3G53460.2	2.5e-64	48.76	chloroplast RNA-binding protein 29	[more]
AT3G53460.3	2.5e-64	48.76	chloroplast RNA-binding protein 29	[more]
AT3G53460.4	1.3e-60	45.77	chloroplast RNA-binding protein 29	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 193..255 e-value: 2.6E-11 score: 53.6 coord: 93..166 e-value: 1.1E-28 score: 111.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 94..164 e-value: 1.0E-19 score: 70.1 coord: 195..255 e-value: 1.1E-13 score: 50.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 192..255 score: 15.238032
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 92..170 score: 19.638327
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 59..175 e-value: 1.2E-28 score: 102.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 176..255 e-value: 1.9E-18 score: 68.6
None	No IPR available	PANTHER	PTHR48025:SF1	29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 1..255
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..255
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 93..166 e-value: 6.87239E-34 score: 115.403
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 91..255

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019650.1	MS019650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding