MS019637 (gene) Bitter gourd (TR) v1

Overview
NameMS019637
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionActin-related T1
Locationscaffold729: 1199977 .. 1201978 (-)
RNA-Seq ExpressionMS019637
SyntenyMS019637
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGTACTTCGGAAATGCGTACAGAGGTGACCCGGGAGTTCCCCACGCCGACCCGGATCGTTTCGTCAACATTTGGATTGGATCCGCCGCCTTCTCCGTCCTCACCTGGTTCAATCCCTACATGTGGCAGCTCTCCAATCAATTCAAGTACTCTTCTTCAACTCTTATTCTGCTGCGCAATTCGCTTTCCCGTTTCTCTAATCTGTTTGTAGCTAATTCGTCTGTGTTTTGTGAATTCGCTACATGGATAGTCACTACATCGATGTGCTAATGTTCAATTTCTGTAGGAATAGTTTCACCTTGTTTTTGGTGGGTCGGTTTTGAAATTAATTTTTAATGGAGGAAGACTCTGAAGGGATTTAATTGTTGATCGATTTCTGTCAGGCTCCCACAATATACCCGCTTTATATGTGGCTTATCGGTCTGACCAGGTAGGAATGCACAATTACAAGAGACCATATCTAAGAATCACCGACAGTTTAATTTGAATAATGTATTCGACACGAACACATGTTGGATACTCTTGACACTCGTGACACACTTATCGGAAATTTGTTAGTTCAATGATGTGTGTCACACACTAATTGTACAAAGGAAATATGGATTTAACATTTATTATAGTCACGTATGGAACACTTATTAAGCATAATAAATAGAAATAAATGATAATATTAACAAAATAATAAATTTTGAGAGCAAAATACATCACATTCATTTTTTTAAGCATAAACTTATTGAATTTGAATTTCCTTATGGTATAAAAGTTGATATATACTTTAAAGAATTGTATATTTCAATTAACGTATCATTGACGTGTCCATGTCTTAGATTTTTAGAAAATAATGTGTCATCATATCCCTATCTTGTCATATTCCTATCTCGTGTTTGTATTCGTGCTGCTTAAGACCATATCGTTCTAGAAGTATTAAGGACTTCTTTCAGCTTCATGGCCTGTATAGTTACAGTTATAATCTAGCCACTTATTATTCAACTAGTTCTGGAATTGGAAAAAATGTACATTTATTTTCCTGCGGCAGTGTAAATTTGGTTATTGGACTTAATATTCGATTCACATTACAATTTATGCTATTGTACAAACAATAGTATCGCCGATGCATCCACATTTCCCAAGAAGAAAAGAAATTCGCTTTTCTTGACGTCTTCTGGCAAAGGTATAATTTTTTATTTTCTACGGACTAGTTTGCGCACAGCTCGACTAATCTCATGAGATAATTGTCGATCCGGTTCCAAAGAAATACATAAAAAATTAATTCTTAAGTAGGTGGTCATTATGGAATTTGAACTCATTCCCTCTAGCCTAAGAGTATAGACTATTGTAATTATATATATGGTTTTATTCCTATATTGTTCAGTGCTGTTCTTACTTTTGGATTCTGCTTCTTTTTGTCTTGAGAGAGCCCTCTCTTACATGATATAGTGATTATGGAGCCAGGTTATGTTATGCCTTTATGTTATTGCTTAGTTCATTGATGTTGTCATAGTAACTTAGAAGCATGAATCTAATTTTGATAAAAAATGTACGTGGCTGGGTTGTTAATAGTGGAGATATTGGAATCCTTTTTTGTCGATCGTTCTGCACTTATACTTCTTTGCGTTATGCTCATAGAGATGACGTGTGTGGGACGTGATGCTTTATATTGTTTTTGCTACTTCTCCTTAGCATTTTGTCATCTTTATTCTCTGTGCTCATATTTGAAGTACGAGTTCTCAATTTGTAGTTGGCATGACAAAGCATTTCTGTTTGAGCAATACCACTGGAAAAAGGCCCGACAAAAGAATCAACCATACCAGTTCAAGGTAACATTGTTTTGCTCCAGTTAATTTAAAGCATGTATTGCTGCATATGAACTATGTATATTAAGATTTCATGGAATGCTTCTTTTGCCCTTACAAAATTTGCACTGCTGCAGTGGAATCAGTACATGGACAAGGACCACCGAGATTCCTACTATTTTAACTGGCCCGTGTACTTTCCT

mRNA sequence

ATGGAGAAGTACTTCGGAAATGCGTACAGAGGTGACCCGGGAGTTCCCCACGCCGACCCGGATCGTTTCGTCAACATTTGGATTGGATCCGCCGCCTTCTCCGTCCTCACCTGGTTCAATCCCTACATGTGGCAGCTCTCCAATCAATTCAATTGGCATGACAAAGCATTTCTGTTTGAGCAATACCACTGGAAAAAGGCCCGACAAAAGAATCAACCATACCAGTTCAAGTGGAATCAGTACATGGACAAGGACCACCGAGATTCCTACTATTTTAACTGGCCCGTGTACTTTCCT

Coding sequence (CDS)

ATGGAGAAGTACTTCGGAAATGCGTACAGAGGTGACCCGGGAGTTCCCCACGCCGACCCGGATCGTTTCGTCAACATTTGGATTGGATCCGCCGCCTTCTCCGTCCTCACCTGGTTCAATCCCTACATGTGGCAGCTCTCCAATCAATTCAATTGGCATGACAAAGCATTTCTGTTTGAGCAATACCACTGGAAAAAGGCCCGACAAAAGAATCAACCATACCAGTTCAAGTGGAATCAGTACATGGACAAGGACCACCGAGATTCCTACTATTTTAACTGGCCCGTGTACTTTCCT

Protein sequence

MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFNWHDKAFLFEQYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP
Homology
[Close]
BLAST of MS019637 vs. NCBI nr
Match: XP_022144660.1 (uncharacterized protein LOC111014295 [Momordica charantia])

HSP 1 Score: 226.5 bits (576), Expect = 1.0e-55
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
           MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFNWHDKAFLFE
Sbjct: 1   MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60

Query: 61  QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP 100
           QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP
Sbjct: 61  QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP 99

[Close]
BLAST of MS019637 vs. NCBI nr
Match: XP_038903427.1 (uncharacterized protein LOC120090020 [Benincasa hispida])

HSP 1 Score: 223.4 bits (568), Expect = 8.6e-55
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 0 

Query: 1   MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
           MEKYFGNAYRGDPGVPH DPDRFVNIWIGSAAFSV TWFNPYMWQLSNQFNWHDKAFLFE
Sbjct: 1   MEKYFGNAYRGDPGVPHTDPDRFVNIWIGSAAFSVFTWFNPYMWQLSNQFNWHDKAFLFE 60

Query: 61  QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP 100
           QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP
Sbjct: 61  QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP 99

[Close]
BLAST of MS019637 vs. NCBI nr
Match: XP_031397992.1 (uncharacterized protein LOC116208603 [Punica granatum])

HSP 1 Score: 217.2 bits (552), Expect = 6.2e-53
Identity = 93/99 (93.94%), Postives = 97/99 (97.98%), Query Frame = 0 

Query: 1   MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
           MEKYFGNAYRGDPGVPHADP+RFVNIWIGSAAFS LTWFNPYMWQL+NQFNWHDKAFLFE
Sbjct: 1   MEKYFGNAYRGDPGVPHADPERFVNIWIGSAAFSALTWFNPYMWQLTNQFNWHDKAFLFE 60

Query: 61  QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP 100
           QYHWKKAR KNQPY+FKWN+YMDKDHRDSYYFNWPVYFP
Sbjct: 61  QYHWKKARAKNQPYKFKWNEYMDKDHRDSYYFNWPVYFP 99

[Close]
BLAST of MS019637 vs. NCBI nr
Match: XP_008442705.1 (PREDICTED: uncharacterized protein LOC103486497 [Cucumis melo])

HSP 1 Score: 216.1 bits (549), Expect = 1.4e-52
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1   MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
           MEKYFGNAYRGDPGVPH DP RF NIWIG+A FSVLTWFNPYMWQLSNQFNWHDKAFLFE
Sbjct: 1   MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60

Query: 61  QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP 100
           QYHWKKAR+KNQPYQFKWNQYMDKDHRDSYYFNWP+YFP
Sbjct: 61  QYHWKKAREKNQPYQFKWNQYMDKDHRDSYYFNWPIYFP 99

[Close]
BLAST of MS019637 vs. NCBI nr
Match: XP_023529054.1 (uncharacterized protein LOC111791803 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215.3 bits (547), Expect = 2.4e-52
Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 0 

Query: 1   MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
           MEKYFGNAYRGDPGVPH DPDRFVNIWIGSAAFSVLTW NPYMWQLSNQFNWHDKAFLFE
Sbjct: 1   MEKYFGNAYRGDPGVPHTDPDRFVNIWIGSAAFSVLTWKNPYMWQLSNQFNWHDKAFLFE 60

Query: 61  QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP 100
           QYHWKKAR+KNQPYQFKWNQYMDK HRDSYY+NWPVYFP
Sbjct: 61  QYHWKKAREKNQPYQFKWNQYMDKLHRDSYYYNWPVYFP 99

[Close]
BLAST of MS019637 vs. ExPASy TrEMBL
Match: A0A6J1CS98 (uncharacterized protein LOC111014295 OS=Momordica charantia OX=3673 GN=LOC111014295 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 4.9e-56
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
           MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFNWHDKAFLFE
Sbjct: 1   MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60

Query: 61  QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP 100
           QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP
Sbjct: 61  QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP 99

[Close]
BLAST of MS019637 vs. ExPASy TrEMBL
Match: A0A6P8DKX4 (uncharacterized protein LOC116208603 OS=Punica granatum OX=22663 GN=LOC116208603 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.0e-53
Identity = 93/99 (93.94%), Postives = 97/99 (97.98%), Query Frame = 0 

Query: 1   MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
           MEKYFGNAYRGDPGVPHADP+RFVNIWIGSAAFS LTWFNPYMWQL+NQFNWHDKAFLFE
Sbjct: 1   MEKYFGNAYRGDPGVPHADPERFVNIWIGSAAFSALTWFNPYMWQLTNQFNWHDKAFLFE 60

Query: 61  QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP 100
           QYHWKKAR KNQPY+FKWN+YMDKDHRDSYYFNWPVYFP
Sbjct: 61  QYHWKKARAKNQPYKFKWNEYMDKDHRDSYYFNWPVYFP 99

[Close]
BLAST of MS019637 vs. ExPASy TrEMBL
Match: A0A1S3B6B6 (uncharacterized protein LOC103486497 OS=Cucumis melo OX=3656 GN=LOC103486497 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 6.7e-53
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1   MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
           MEKYFGNAYRGDPGVPH DP RF NIWIG+A FSVLTWFNPYMWQLSNQFNWHDKAFLFE
Sbjct: 1   MEKYFGNAYRGDPGVPHTDPGRFFNIWIGAAGFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60

Query: 61  QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP 100
           QYHWKKAR+KNQPYQFKWNQYMDKDHRDSYYFNWP+YFP
Sbjct: 61  QYHWKKAREKNQPYQFKWNQYMDKDHRDSYYFNWPIYFP 99

[Close]
BLAST of MS019637 vs. ExPASy TrEMBL
Match: A0A6J1J1C9 (uncharacterized protein LOC111481799 OS=Cucurbita maxima OX=3661 GN=LOC111481799 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.5e-52
Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = 0 

Query: 1   MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
           MEKYFGNAYRGDPGVPH DPDRFVNIWIGSAAFS+LTW NPYMWQLSNQFNWHDKAFLFE
Sbjct: 1   MEKYFGNAYRGDPGVPHTDPDRFVNIWIGSAAFSILTWKNPYMWQLSNQFNWHDKAFLFE 60

Query: 61  QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP 100
           QYHWKKAR+KNQPYQFKWNQYMDK HRDSYY+NWPVYFP
Sbjct: 61  QYHWKKAREKNQPYQFKWNQYMDKLHRDSYYYNWPVYFP 99

[Close]
BLAST of MS019637 vs. ExPASy TrEMBL
Match: A0A6J1F2Q8 (uncharacterized protein LOC111441842 OS=Cucurbita moschata OX=3662 GN=LOC111441842 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.5e-52
Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = 0 

Query: 1   MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
           MEKYFGNAYRGDPGVPH DPDRFVNIWIGSAAFS+LTW NPYMWQLSNQFNWHDKAFLFE
Sbjct: 1   MEKYFGNAYRGDPGVPHTDPDRFVNIWIGSAAFSILTWKNPYMWQLSNQFNWHDKAFLFE 60

Query: 61  QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP 100
           QYHWKKAR+KNQPYQFKWNQYMDK HRDSYY+NWPVYFP
Sbjct: 61  QYHWKKAREKNQPYQFKWNQYMDKLHRDSYYYNWPVYFP 99

[Close]
BLAST of MS019637 vs. TAIR 10
Match: AT3G09860.1 (unknown protein; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 187.2 bits (474), Expect = 6.4e-48
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 0 

Query: 1   MEKYFGNAYRGDPGVPHADPDRFVNIWIGSAAFSVLTWFNPYMWQLSNQFNWHDKAFLFE 60
           MEKYFGNAYRGDPGVPHAD DRFVNIWIGSAAFSVLTW NPYMWQLSNQFN+HDK  LFE
Sbjct: 1   MEKYFGNAYRGDPGVPHADADRFVNIWIGSAAFSVLTWVNPYMWQLSNQFNYHDKWMLFE 60

Query: 61  QYHWKKARQKNQPYQFKWNQYMDKDHRDSYYFNWPVYFP 100
           QYHWKKAR K QPY+FKWN+ + K+ RDSYY+NWPVYFP
Sbjct: 61  QYHWKKARAKKQPYEFKWNK-IPKEVRDSYYYNWPVYFP 98

The following BLAST results are available for this feature:
BLAST of MS019637 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022144660.11.0e-55100.00uncharacterized protein LOC111014295 [Momordica charantia][more]
XP_038903427.18.6e-5597.98uncharacterized protein LOC120090020 [Benincasa hispida][more]
XP_031397992.16.2e-5393.94uncharacterized protein LOC116208603 [Punica granatum][more]
XP_008442705.11.4e-5292.93PREDICTED: uncharacterized protein LOC103486497 [Cucumis melo][more]
XP_023529054.12.4e-5294.95uncharacterized protein LOC111791803 [Cucurbita pepo subsp. pepo][more]
BLAST of MS019637 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS019637 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CS984.9e-56100.00uncharacterized protein LOC111014295 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A6P8DKX43.0e-5393.94uncharacterized protein LOC116208603 OS=Punica granatum OX=22663 GN=LOC116208603... [more]
A0A1S3B6B66.7e-5392.93uncharacterized protein LOC103486497 OS=Cucumis melo OX=3656 GN=LOC103486497 PE=... [more]
A0A6J1J1C91.5e-5293.94uncharacterized protein LOC111481799 OS=Cucurbita maxima OX=3661 GN=LOC111481799... [more]
A0A6J1F2Q81.5e-5293.94uncharacterized protein LOC111441842 OS=Cucurbita moschata OX=3662 GN=LOC1114418... [more]
BLAST of MS019637 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G09860.16.4e-4884.85unknown protein; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36360ACTIN T1-LIKE PROTEINcoord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS019637.1MS019637.1mRNA