MS019617 (gene) Bitter gourd (TR) v1

Overview


Name	MS019617
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	alpha carbonic anhydrase 4
Location	scaffold729: 1037801 .. 1037905 (-)
RNA-Seq Expression	MS019617
Synteny	MS019617

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TACATTAGATCACTCACCACTCCTCCTTGTACAGAAGCTGTCATTTGGACTGTAATCCAAAGGGTACTTAATATTATTCTTTGCTCTTTTCCTCTCCTAATTTGG

mRNA sequence

TACATTAGATCACTCACCACTCCTCCTTGTACAGAAGCTGTCATTTGGACTGTAATCCAAAGGGTACTTAATATTATTCTTTGCTCTTTTCCTCTCCTAATTTGG

Coding sequence (CDS)

TACATTAGATCACTCACCACTCCTCCTTGTACAGAAGCTGTCATTTGGACTGTAATCCAAAGGGTACTTAATATTATTCTTTGCTCTTTTCCTCTCCTAATTTGG

Protein sequence

YIRSLTTPPCTEAVIWTVIQRVLNIILCSFPLLIW

Homology

[Close]

BLAST of MS019617 vs. TAIR 10
Match: AT4G20990.1 (alpha carbonic anhydrase 4 )

HSP 1 Score: 40.8 bits (94), Expect = 2.6e-04
Identity = 18/25 (72.00%), Postives = 20/25 (80.00%), Query Frame = 0


Query: 1   YIRSLTTPPCTEAVIWTVIQRVLNI 26
           YI SLT PPCTE VIWTV++RV  I
Sbjct: 205 YIGSLTVPPCTEGVIWTVVKRVNTI 229

[Close]

BLAST of MS019617 vs. TAIR 10
Match: AT2G28210.1 (alpha carbonic anhydrase 2 )

HSP 1 Score: 39.7 bits (91), Expect = 5.8e-04
Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 0


Query: 1   YIRSLTTPPCTEAVIWTVIQRV 23
           YI SLTTPPCT+ VIWTV+++V
Sbjct: 185 YIGSLTTPPCTQNVIWTVVKKV 206

[Close]

BLAST of MS019617 vs. TAIR 10
Match: AT4G21000.1 (alpha carbonic anhydrase 6 )

HSP 1 Score: 39.3 bits (90), Expect = 7.6e-04
Identity = 20/35 (57.14%), Postives = 24/35 (68.57%), Query Frame = 0


Query: 1   YIRSLTTPPCTEAVIWTVIQRVLNIILCSFPLLIW 36
           YI SLT PPCTE VIWTV +RVL      + L+I+
Sbjct: 206 YIGSLTIPPCTEGVIWTVQKRVLYFFCFCYRLIIF 240

The following BLAST results are available for this feature:

BLAST of MS019617 vs.


Match Name	E-value	Identity	Description

BLAST of MS019617 vs.


Match Name	E-value	Identity	Description

BLAST of MS019617 vs.


Match Name	E-value	Identity	Description

BLAST of MS019617 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20990.1	2.6e-04	72.00	alpha carbonic anhydrase 4	[more]
AT2G28210.1	5.8e-04	72.73	alpha carbonic anhydrase 2	[more]
AT4G21000.1	7.6e-04	57.14	alpha carbonic anhydrase 6	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036398	Alpha carbonic anhydrase domain superfamily	GENE3D	3.10.200.10	Alpha carbonic anhydrase	coord: 1..29 e-value: 6.4E-8 score: 34.6
IPR036398	Alpha carbonic anhydrase domain superfamily	SUPERFAMILY	51069	Carbonic anhydrase	coord: 1..25
IPR001148	Alpha carbonic anhydrase domain	PFAM	PF00194	Carb_anhydrase	coord: 1..25 e-value: 6.3E-7 score: 29.2
IPR001148	Alpha carbonic anhydrase domain	PROSITE	PS51144	ALPHA_CA_2	coord: 1..35 score: 14.370498

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019617.1	MS019617.1	mRNA