MS019603 (gene) Bitter gourd (TR) v1

Overview


Name	MS019603
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Pectinesterase
Location	scaffold729: 911694 .. 912398 (+)
RNA-Seq Expression	MS019603
Synteny	MS019603

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTGCCAAATAAAGTCAATTGCAAAGGAATTGTGGGGTGGTCGGGTAAGTGGAGCCATCACAATGCAAGGCAGTCCAGCAGCGACCAAACTGGGTTTGCTTTTGTCAACTGCACCATCACAATGCAAGGCAGTCCTACCTCTGCCACCGTCGCCTTCTCCACCACGTACATGAGCGGAGTTGTCGCCCCCGATGGATGGAATGATTGGAGAGATTCTTCCCGAGACCAGTAAATTTTGTATATAGAATGACTTTTTCTTTTTGCGAAAAAAATTACTAATCTAGAGTGAAGATTAGATTGATTTAAAATTAGCTTTTGAAAAGATACTTAAGATTAAAATTATTCCAATCTTTTGATTGAAGATATATACTAATAACCTCTAAACTATGTTCGTTTTGATAGTATAATTAACTTTTAAATGTTATGTAACTAAATAAATTTATTATGTAAAAATAAAAGGTGTTTGAACTAAAACGTATGTCAAACTCATCATCTCGAGCTTCGTCTTCTTGTTGTTGTACATTGTGATCTGAGGAGTGTGTTGTTTGGGGAATATGAATGCTTTGGAGATGGAGCAAATTACAGGTTGAGAGTTACATATGCAAAGCAGCTGAATCAAATGGGAAGCTGAACCTTATATGGATGTTTCCAATGTTGATGGAAGTGAATGGCTCATCTATCACCAAACCACTTTCTCTGCCATT

mRNA sequence

GGTTGCCAAATAAAGTCAATTGCAAAGGAATTGTGGGGTGGTCGGGTAAGTGGAGCCATCACAGCAAGGCAGTCCAGCAGCGACCAAACTGGGTTTGCTTTTGTCAACTGCACCATCACAATGCAAGGCAGTCCTACCTCTGCCACCGTCGCCTTCTCCACCACGTACATGAGCGGAGTTGTCGCCCCCGATGGATGGAATGATTGGAGAGATTCTTCCCGAGACCAGAGTGTGTTGTTTGGGGAATATGAATGCTTTGGAGATGGAGCAAATTACAGGTTGAGAGTTACATATGCAAAGCAGCTGAATCAAGAAGCTGAACCTTATATGGATGTTTCCAATGTTGATGGAAGTGAATGGCTCATCTATCACCAAACCACTTTCTCTGCCATT

Coding sequence (CDS)

GGTTGCCAAATAAAGTCAATTGCAAAGGAATTGTGGGGTGGTCGGGTAAGTGGAGCCATCACAGCAAGGCAGTCCAGCAGCGACCAAACTGGGTTTGCTTTTGTCAACTGCACCATCACAATGCAAGGCAGTCCTACCTCTGCCACCGTCGCCTTCTCCACCACGTACATGAGCGGAGTTGTCGCCCCCGATGGATGGAATGATTGGAGAGATTCTTCCCGAGACCAGAGTGTGTTGTTTGGGGAATATGAATGCTTTGGAGATGGAGCAAATTACAGGTTGAGAGTTACATATGCAAAGCAGCTGAATCAAGAAGCTGAACCTTATATGGATGTTTCCAATGTTGATGGAAGTGAATGGCTCATCTATCACCAAACCACTTTCTCTGCCATT

Protein sequence

GCQIKSIAKELWGGRVSGAITARQSSSDQTGFAFVNCTITMQGSPTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQLNQEAEPYMDVSNVDGSEWLIYHQTTFSAI

Homology

[Close]

BLAST of MS019603 vs. NCBI nr
Match: XP_022144633.1 (LOW QUALITY PROTEIN: probable pectinesterase 15 [Momordica charantia])

HSP 1 Score: 228.0 bits (580), Expect = 4.6e-56
Identity = 119/140 (85.00%), Postives = 120/140 (85.71%), Query Frame = 0


Query: 1   GCQIKSIAKELWGGRVSGAIT--ARQSSSDQTGFAFVNCTITMQGS-------PTSATVA 60
           GC+IKSIAKELWGG VSGAIT  ARQSSSDQTGFAFVNCTIT  G          SATV 
Sbjct: 268 GCKIKSIAKELWGGGVSGAITAHARQSSSDQTGFAFVNCTITGSGKVWLGRAWGPSATVV 327

Query: 61  FSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQLNQ-EAEPYM 120
           FSTTYMSGVVAPDGWNDWRD SRDQSVLFGEYECFGDGANYRLRV YAKQLNQ EAEPYM
Sbjct: 328 FSTTYMSGVVAPDGWNDWRDPSRDQSVLFGEYECFGDGANYRLRVPYAKQLNQMEAEPYM 387

Query: 121 DVSNVDGSEWLIYHQTTFSA 131
           DVS VDGSEWLIYHQTTFSA
Sbjct: 388 DVSYVDGSEWLIYHQTTFSA 407

[Close]

BLAST of MS019603 vs. NCBI nr
Match: XP_004137990.1 (putative pectinesterase 14 [Cucumis sativus] >KGN59019.1 hypothetical protein Csa_000744 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 4.2e-41
Identity = 96/143 (67.13%), Postives = 110/143 (76.92%), Query Frame = 0


Query: 1   GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVA 60
           GC+IKSIAKE+ GG VSGAITA  RQ+ S++TGFAF+NCTI+  G           ATV 
Sbjct: 267 GCRIKSIAKEVLGGGVSGAITAHGRQTRSEETGFAFINCTISGSGKVWLGRAWGACATVV 326

Query: 61  FSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQLNQ-EAEPYM 120
           FS TYM+ VVA DGWNDWRD SRDQSVLFGEYECFGDGANYRLRV Y+KQLNQ EA+ Y+
Sbjct: 327 FSKTYMTDVVAVDGWNDWRDPSRDQSVLFGEYECFGDGANYRLRVPYSKQLNQVEAQHYL 386

Query: 121 DVSNVDGSEWLIYHQ--TTFSAI 132
           DVS VDG++WLI  Q  +T S I
Sbjct: 387 DVSYVDGNQWLINQQINSTLSTI 409

[Close]

BLAST of MS019603 vs. NCBI nr
Match: XP_008442748.1 (PREDICTED: putative pectinesterase 14 isoform X1 [Cucumis melo] >TYK25182.1 putative pectinesterase 14 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-40
Identity = 91/137 (66.42%), Postives = 105/137 (76.64%), Query Frame = 0


Query: 1   GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVA 60
           GC+IKSIAKE+ GG VSGAITA  RQ+ S++TGFAF+NCTI+  G           ATV 
Sbjct: 267 GCRIKSIAKEVLGGGVSGAITAQGRQTRSEETGFAFINCTISGSGKVWLGRAWGACATVI 326

Query: 61  FSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQLNQ-EAEPYM 120
           FS TYM+ VV  DGWNDWRD SRDQSVLFGEYECFGDGANY LRV Y+KQLNQ EA+PY+
Sbjct: 327 FSKTYMTDVVVDDGWNDWRDPSRDQSVLFGEYECFGDGANYSLRVPYSKQLNQIEAQPYL 386

Query: 121 DVSNVDGSEWLIYHQTT 128
           DVS +DG++WL   Q T
Sbjct: 387 DVSYIDGNQWLTNQQIT 403

[Close]

BLAST of MS019603 vs. NCBI nr
Match: KAA0043958.1 (putative pectinesterase 14 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-40
Identity = 91/137 (66.42%), Postives = 105/137 (76.64%), Query Frame = 0


Query: 1   GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVA 60
           GC+IKSIAKE+ GG VSGAITA  RQ+ S++TGFAF+NCTI+  G           ATV 
Sbjct: 315 GCRIKSIAKEVLGGGVSGAITAQGRQTRSEETGFAFINCTISGSGKVWLGRAWGACATVI 374

Query: 61  FSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQLNQ-EAEPYM 120
           FS TYM+ VV  DGWNDWRD SRDQSVLFGEYECFGDGANY LRV Y+KQLNQ EA+PY+
Sbjct: 375 FSKTYMTDVVVDDGWNDWRDPSRDQSVLFGEYECFGDGANYSLRVPYSKQLNQIEAQPYL 434

Query: 121 DVSNVDGSEWLIYHQTT 128
           DVS +DG++WL   Q T
Sbjct: 435 DVSYIDGNQWLTNQQIT 451

[Close]

BLAST of MS019603 vs. NCBI nr
Match: XP_038905816.1 (putative pectinesterase 14 [Benincasa hispida])

HSP 1 Score: 174.5 bits (441), Expect = 6.1e-40
Identity = 93/142 (65.49%), Postives = 107/142 (75.35%), Query Frame = 0


Query: 1   GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVA 60
           GC+IKSIAKE+  G VSGAITA  RQ+ +++TGFAF+NCTI   G           ATV 
Sbjct: 268 GCRIKSIAKEVLEGGVSGAITAQGRQTRNEETGFAFINCTINGSGKVWLGRAWGACATVV 327

Query: 61  FSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQLNQ-EAEPYM 120
           FS TYM+ +VA DGWNDWRD SRDQSVLFGEYECFGDGANY  RV Y+KQLNQ EA+PY+
Sbjct: 328 FSKTYMTDIVAADGWNDWRDPSRDQSVLFGEYECFGDGANYSSRVPYSKQLNQVEAQPYL 387

Query: 121 DVSNVDGSEWLIYHQ-TTFSAI 132
           DVS VDG++WLI  Q TT S I
Sbjct: 388 DVSYVDGNQWLINQQITTLSTI 409

[Close]

BLAST of MS019603 vs. ExPASy Swiss-Prot
Match: Q9ZQA3 (Probable pectinesterase 15 OS=Arabidopsis thaliana OX=3702 GN=PME15 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.5e-28
Identity = 65/130 (50.00%), Postives = 89/130 (68.46%), Query Frame = 0


Query: 2   CQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAF 61
           C I SIAK    G V+G+ITA  RQS  +Q+GF+FVNC I   G           ATV F
Sbjct: 257 CTINSIAKGNTSG-VTGSITAQGRQSEDEQSGFSFVNCKIDGSGEILLGRAWGAYATVVF 316

Query: 62  STTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQL-NQEAEPYMD 121
           S TYMSG++ P+GWN+W DS+++++V FGE++C+G GA+Y+ RV + KQL + EA  ++D
Sbjct: 317 SNTYMSGIITPEGWNNWGDSTKEKTVTFGEHKCYGPGADYKERVLFGKQLTDSEASSFID 376

[Close]

BLAST of MS019603 vs. ExPASy Swiss-Prot
Match: Q9ZQA4 (Putative pectinesterase 14 OS=Arabidopsis thaliana OX=3702 GN=PME14 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.0e-21
Identity = 60/130 (46.15%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 2   CQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAF 61
           C + SIAKE       G ITA  + +  D+TGF FVNC IT              A V F
Sbjct: 208 CTLHSIAKE----NTIGCITANGKDTLKDRTGFVFVNCKITGSARVWLGRAWRPYARVIF 267

Query: 62  STTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQLNQ-EAEPYMD 121
           S TYMS VV+ DGWND  D    ++V +GE+ C+G GAN+  RVTYAK L+  EA P+ +
Sbjct: 268 SKTYMSRVVSLDGWNDMGDPKTQRTVYYGEHRCYGPGANHSKRVTYAKLLSDVEAAPFTN 327

[Close]

BLAST of MS019603 vs. ExPASy Swiss-Prot
Match: Q8VYZ3 (Probable pectinesterase 53 OS=Arabidopsis thaliana OX=3702 GN=PME53 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.6e-21
Identity = 54/132 (40.91%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 1   GCQIKSIAKELWGGRVSGAITARQSSS--DQTGFAFVNCTITMQG--------SPTSATV 60
           GC + +IA +L      GA+TA+  SS  + TGF+FV C +T  G         P S  V
Sbjct: 257 GCHVHAIADKL------GAVTAQGRSSVLEDTGFSFVKCKVTGTGVLYLGRAWGPFS-RV 316

Query: 61  AFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQL-NQEAEPY 120
            F+ TYM  ++ P GW +W D SR+ +V +G+Y+C G GANY  RV +A++L ++EA+P+
Sbjct: 317 VFAYTYMDNIILPRGWYNWGDPSREMTVFYGQYKCTGAGANYGGRVAWARELTDEEAKPF 376

Query: 121 MDVSNVDGSEWL 122
           + ++ +DGSEW+
Sbjct: 377 LSLTFIDGSEWI 381

[Close]

BLAST of MS019603 vs. ExPASy Swiss-Prot
Match: O23038 (Probable pectinesterase 8 OS=Arabidopsis thaliana OX=3702 GN=PME8 PE=2 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-18
Identity = 55/133 (41.35%), Postives = 80/133 (60.15%), Query Frame = 0


Query: 2   CQIKSIAKELWGG--RVSGAITA--RQSSSDQTGFAFVNCTITMQG--------SPTSAT 61
           C+I S+A +L  G   V+GA+TA  R S  + +GF+FVNCTI   G         P S  
Sbjct: 257 CRIISMANQLSPGSKAVNGAVTANGRSSKDENSGFSFVNCTIGGTGHVWLGRAWRPYSRV 316

Query: 62  VAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQLNQ-EAEP 121
           V  STT M+ V+AP+GWN++ D SRD ++ +GEY C G GA+   R  Y ++LN+ +   
Sbjct: 317 VFVSTT-MTDVIAPEGWNNFNDPSRDATIFYGEYNCSGPGADMSKRAPYVQKLNETQVAL 376

[Close]

BLAST of MS019603 vs. ExPASy Swiss-Prot
Match: Q9SIJ9 (Putative pectinesterase 11 OS=Arabidopsis thaliana OX=3702 GN=PME11 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.8e-17
Identity = 44/115 (38.26%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 17  SGAITA--RQSSSDQTGFAFVNCTITMQGSP-------TSATVAFSTTYMSGVVAPDGWN 76
           +G+ITA  R S+++++GF F+ C +T  GS          + V F+ ++ S VVAP GWN
Sbjct: 218 NGSITAQMRTSATEKSGFTFLGCKLTGSGSTFLGRPWGAYSRVVFAYSFFSNVVAPQGWN 277

Query: 77  DWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQL-NQEAEPYMDVSNVDGSEWL 122
            W DS+++ +V +GEY+C+G GA+   RV ++KQL ++EA  ++    + G +WL
Sbjct: 278 QWGDSTKENTVYYGEYKCYGPGADREQRVEWSKQLSDEEATVFLSKDFIGGKDWL 332

[Close]

BLAST of MS019603 vs. ExPASy TrEMBL
Match: A0A6J1CTT3 (Pectinesterase OS=Momordica charantia OX=3673 GN=LOC111014273 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.2e-56
Identity = 119/140 (85.00%), Postives = 120/140 (85.71%), Query Frame = 0


Query: 1   GCQIKSIAKELWGGRVSGAIT--ARQSSSDQTGFAFVNCTITMQGS-------PTSATVA 60
           GC+IKSIAKELWGG VSGAIT  ARQSSSDQTGFAFVNCTIT  G          SATV 
Sbjct: 268 GCKIKSIAKELWGGGVSGAITAHARQSSSDQTGFAFVNCTITGSGKVWLGRAWGPSATVV 327

Query: 61  FSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQLNQ-EAEPYM 120
           FSTTYMSGVVAPDGWNDWRD SRDQSVLFGEYECFGDGANYRLRV YAKQLNQ EAEPYM
Sbjct: 328 FSTTYMSGVVAPDGWNDWRDPSRDQSVLFGEYECFGDGANYRLRVPYAKQLNQMEAEPYM 387

Query: 121 DVSNVDGSEWLIYHQTTFSA 131
           DVS VDGSEWLIYHQTTFSA
Sbjct: 388 DVSYVDGSEWLIYHQTTFSA 407

[Close]

BLAST of MS019603 vs. ExPASy TrEMBL
Match: A0A0A0LDS9 (Pectinesterase OS=Cucumis sativus OX=3659 GN=Csa_3G745520 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.0e-41
Identity = 96/143 (67.13%), Postives = 110/143 (76.92%), Query Frame = 0


Query: 1   GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVA 60
           GC+IKSIAKE+ GG VSGAITA  RQ+ S++TGFAF+NCTI+  G           ATV 
Sbjct: 267 GCRIKSIAKEVLGGGVSGAITAHGRQTRSEETGFAFINCTISGSGKVWLGRAWGACATVV 326

Query: 61  FSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQLNQ-EAEPYM 120
           FS TYM+ VVA DGWNDWRD SRDQSVLFGEYECFGDGANYRLRV Y+KQLNQ EA+ Y+
Sbjct: 327 FSKTYMTDVVAVDGWNDWRDPSRDQSVLFGEYECFGDGANYRLRVPYSKQLNQVEAQHYL 386

Query: 121 DVSNVDGSEWLIYHQ--TTFSAI 132
           DVS VDG++WLI  Q  +T S I
Sbjct: 387 DVSYVDGNQWLINQQINSTLSTI 409

[Close]

BLAST of MS019603 vs. ExPASy TrEMBL
Match: A0A5D3DNS7 (Pectinesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003080 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.9e-41
Identity = 91/137 (66.42%), Postives = 105/137 (76.64%), Query Frame = 0


Query: 1   GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVA 60
           GC+IKSIAKE+ GG VSGAITA  RQ+ S++TGFAF+NCTI+  G           ATV 
Sbjct: 267 GCRIKSIAKEVLGGGVSGAITAQGRQTRSEETGFAFINCTISGSGKVWLGRAWGACATVI 326

Query: 61  FSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQLNQ-EAEPYM 120
           FS TYM+ VV  DGWNDWRD SRDQSVLFGEYECFGDGANY LRV Y+KQLNQ EA+PY+
Sbjct: 327 FSKTYMTDVVVDDGWNDWRDPSRDQSVLFGEYECFGDGANYSLRVPYSKQLNQIEAQPYL 386

Query: 121 DVSNVDGSEWLIYHQTT 128
           DVS +DG++WL   Q T
Sbjct: 387 DVSYIDGNQWLTNQQIT 403

[Close]

BLAST of MS019603 vs. ExPASy TrEMBL
Match: A0A5A7TM68 (Pectinesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G003030 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.9e-41
Identity = 91/137 (66.42%), Postives = 105/137 (76.64%), Query Frame = 0


Query: 1   GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVA 60
           GC+IKSIAKE+ GG VSGAITA  RQ+ S++TGFAF+NCTI+  G           ATV 
Sbjct: 315 GCRIKSIAKEVLGGGVSGAITAQGRQTRSEETGFAFINCTISGSGKVWLGRAWGACATVI 374

Query: 61  FSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQLNQ-EAEPYM 120
           FS TYM+ VV  DGWNDWRD SRDQSVLFGEYECFGDGANY LRV Y+KQLNQ EA+PY+
Sbjct: 375 FSKTYMTDVVVDDGWNDWRDPSRDQSVLFGEYECFGDGANYSLRVPYSKQLNQIEAQPYL 434

Query: 121 DVSNVDGSEWLIYHQTT 128
           DVS +DG++WL   Q T
Sbjct: 435 DVSYIDGNQWLTNQQIT 451

[Close]

BLAST of MS019603 vs. ExPASy TrEMBL
Match: A0A1S3B6F5 (Pectinesterase OS=Cucumis melo OX=3656 GN=LOC103486534 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.9e-41
Identity = 91/137 (66.42%), Postives = 105/137 (76.64%), Query Frame = 0


Query: 1   GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVA 60
           GC+IKSIAKE+ GG VSGAITA  RQ+ S++TGFAF+NCTI+  G           ATV 
Sbjct: 267 GCRIKSIAKEVLGGGVSGAITAQGRQTRSEETGFAFINCTISGSGKVWLGRAWGACATVI 326

Query: 61  FSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQLNQ-EAEPYM 120
           FS TYM+ VV  DGWNDWRD SRDQSVLFGEYECFGDGANY LRV Y+KQLNQ EA+PY+
Sbjct: 327 FSKTYMTDVVVDDGWNDWRDPSRDQSVLFGEYECFGDGANYSLRVPYSKQLNQIEAQPYL 386

Query: 121 DVSNVDGSEWLIYHQTT 128
           DVS +DG++WL   Q T
Sbjct: 387 DVSYIDGNQWLTNQQIT 403

[Close]

BLAST of MS019603 vs. TAIR 10
Match: AT2G36710.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 124.4 bits (311), Expect = 6.7e-29
Identity = 65/130 (50.00%), Postives = 89/130 (68.46%), Query Frame = 0


Query: 2   CQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAF 61
           C I SIAK    G V+G+ITA  RQS  +Q+GF+FVNC I   G           ATV F
Sbjct: 257 CTINSIAKGNTSG-VTGSITAQGRQSEDEQSGFSFVNCKIDGSGEILLGRAWGAYATVVF 316

Query: 62  STTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQL-NQEAEPYMD 121
           S TYMSG++ P+GWN+W DS+++++V FGE++C+G GA+Y+ RV + KQL + EA  ++D
Sbjct: 317 SNTYMSGIITPEGWNNWGDSTKEKTVTFGEHKCYGPGADYKERVLFGKQLTDSEASSFID 376

[Close]

BLAST of MS019603 vs. TAIR 10
Match: AT2G36700.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-22
Identity = 60/130 (46.15%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 2   CQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAF 61
           C + SIAKE       G ITA  + +  D+TGF FVNC IT              A V F
Sbjct: 208 CTLHSIAKE----NTIGCITANGKDTLKDRTGFVFVNCKITGSARVWLGRAWRPYARVIF 267

Query: 62  STTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQLNQ-EAEPYMD 121
           S TYMS VV+ DGWND  D    ++V +GE+ C+G GAN+  RVTYAK L+  EA P+ +
Sbjct: 268 SKTYMSRVVSLDGWNDMGDPKTQRTVYYGEHRCYGPGANHSKRVTYAKLLSDVEAAPFTN 327

[Close]

BLAST of MS019603 vs. TAIR 10
Match: AT5G19730.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 6.1e-22
Identity = 54/132 (40.91%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 1   GCQIKSIAKELWGGRVSGAITARQSSS--DQTGFAFVNCTITMQG--------SPTSATV 60
           GC + +IA +L      GA+TA+  SS  + TGF+FV C +T  G         P S  V
Sbjct: 257 GCHVHAIADKL------GAVTAQGRSSVLEDTGFSFVKCKVTGTGVLYLGRAWGPFS-RV 316

Query: 61  AFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQL-NQEAEPY 120
            F+ TYM  ++ P GW +W D SR+ +V +G+Y+C G GANY  RV +A++L ++EA+P+
Sbjct: 317 VFAYTYMDNIILPRGWYNWGDPSREMTVFYGQYKCTGAGANYGGRVAWARELTDEEAKPF 376

Query: 121 MDVSNVDGSEWL 122
           + ++ +DGSEW+
Sbjct: 377 LSLTFIDGSEWI 381

[Close]

BLAST of MS019603 vs. TAIR 10
Match: AT1G05310.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-19
Identity = 55/133 (41.35%), Postives = 80/133 (60.15%), Query Frame = 0


Query: 2   CQIKSIAKELWGG--RVSGAITA--RQSSSDQTGFAFVNCTITMQG--------SPTSAT 61
           C+I S+A +L  G   V+GA+TA  R S  + +GF+FVNCTI   G         P S  
Sbjct: 257 CRIISMANQLSPGSKAVNGAVTANGRSSKDENSGFSFVNCTIGGTGHVWLGRAWRPYSRV 316

Query: 62  VAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQLNQ-EAEP 121
           V  STT M+ V+AP+GWN++ D SRD ++ +GEY C G GA+   R  Y ++LN+ +   
Sbjct: 317 VFVSTT-MTDVIAPEGWNNFNDPSRDATIFYGEYNCSGPGADMSKRAPYVQKLNETQVAL 376

[Close]

BLAST of MS019603 vs. TAIR 10
Match: AT2G21610.1 (pectinesterase 11 )

HSP 1 Score: 88.6 bits (218), Expect = 4.1e-18
Identity = 44/115 (38.26%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 17  SGAITA--RQSSSDQTGFAFVNCTITMQGSP-------TSATVAFSTTYMSGVVAPDGWN 76
           +G+ITA  R S+++++GF F+ C +T  GS          + V F+ ++ S VVAP GWN
Sbjct: 218 NGSITAQMRTSATEKSGFTFLGCKLTGSGSTFLGRPWGAYSRVVFAYSFFSNVVAPQGWN 277

Query: 77  DWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQL-NQEAEPYMDVSNVDGSEWL 122
            W DS+++ +V +GEY+C+G GA+   RV ++KQL ++EA  ++    + G +WL
Sbjct: 278 QWGDSTKENTVYYGEYKCYGPGADREQRVEWSKQLSDEEATVFLSKDFIGGKDWL 332

The following BLAST results are available for this feature:

BLAST of MS019603 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144633.1	4.6e-56	85.00	LOW QUALITY PROTEIN: probable pectinesterase 15 [Momordica charantia]	[more]
XP_004137990.1	4.2e-41	67.13	putative pectinesterase 14 [Cucumis sativus] >KGN59019.1 hypothetical protein Cs...	[more]
XP_008442748.1	1.2e-40	66.42	PREDICTED: putative pectinesterase 14 isoform X1 [Cucumis melo] >TYK25182.1 puta...	[more]
KAA0043958.1	1.2e-40	66.42	putative pectinesterase 14 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_038905816.1	6.1e-40	65.49	putative pectinesterase 14 [Benincasa hispida]	[more]

BLAST of MS019603 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZQA3	9.5e-28	50.00	Probable pectinesterase 15 OS=Arabidopsis thaliana OX=3702 GN=PME15 PE=2 SV=1	[more]
Q9ZQA4	3.0e-21	46.15	Putative pectinesterase 14 OS=Arabidopsis thaliana OX=3702 GN=PME14 PE=2 SV=1	[more]
Q8VYZ3	8.6e-21	40.91	Probable pectinesterase 53 OS=Arabidopsis thaliana OX=3702 GN=PME53 PE=2 SV=1	[more]
O23038	1.8e-18	41.35	Probable pectinesterase 8 OS=Arabidopsis thaliana OX=3702 GN=PME8 PE=2 SV=2	[more]
Q9SIJ9	5.8e-17	38.26	Putative pectinesterase 11 OS=Arabidopsis thaliana OX=3702 GN=PME11 PE=3 SV=1	[more]

BLAST of MS019603 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTT3	2.2e-56	85.00	Pectinesterase OS=Momordica charantia OX=3673 GN=LOC111014273 PE=4 SV=1	[more]
A0A0A0LDS9	2.0e-41	67.13	Pectinesterase OS=Cucumis sativus OX=3659 GN=Csa_3G745520 PE=4 SV=1	[more]
A0A5D3DNS7	5.9e-41	66.42	Pectinesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00308...	[more]
A0A5A7TM68	5.9e-41	66.42	Pectinesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G00303...	[more]
A0A1S3B6F5	5.9e-41	66.42	Pectinesterase OS=Cucumis melo OX=3656 GN=LOC103486534 PE=4 SV=1	[more]

BLAST of MS019603 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36710.1	6.7e-29	50.00	Pectin lyase-like superfamily protein	[more]
AT2G36700.1	2.1e-22	46.15	Pectin lyase-like superfamily protein	[more]
AT5G19730.1	6.1e-22	40.91	Pectin lyase-like superfamily protein	[more]
AT1G05310.1	1.3e-19	41.35	Pectin lyase-like superfamily protein	[more]
AT2G21610.1	4.1e-18	38.26	pectinesterase 11	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000070	Pectinesterase, catalytic	PFAM	PF01095	Pectinesterase	coord: 23..100 e-value: 2.2E-7 score: 29.9
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..130 e-value: 4.3E-23 score: 84.2
None	No IPR available	PANTHER	PTHR31321:SF73	PECTINESTERASE 14-RELATED	coord: 1..126
None	No IPR available	PANTHER	PTHR31321	ACYL-COA THIOESTER HYDROLASE YBHC-RELATED	coord: 1..126
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 19..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019603.1	MS019603.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042545	cell wall modification
molecular_function	GO:0030599	pectinesterase activity