MS019579 (gene) Bitter gourd (TR) v1

Overview


Name	MS019579
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	60S ribosomal protein L24
Location	scaffold729: 732639 .. 734055 (-)
RNA-Seq Expression	MS019579
Synteny	MS019579

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAATTTCAGGACTGAACTTTGCCGATTCAGTGGTGCCAAGATATATCCTGGGAGGGGCATTAGATTTGTCCGGGCTGATTCTCAGGTGATTGCCATTTTTTATATAACTTATGATATAAGCTGATTAATCTCATTACATCATAATTATAGAGAACTCTGTAAATACTTTGTTCTTCTCTAATTAATCCCAACCTCTGTTGGGATTTGGAGCTTTAATATTCTGCTTATTTGAATCATTCTTAACATCTTTTCCCTTGTTTTCGTGATTTCCTTTGTTAATCTGTTAGGTGTTCCTCTTTGCCAACTCTAAATGCAAGAGGTACTTTCACAATCGGCTGAAGCCATCGAAGCTGACCTGGACAGCTATGTACAGGAAGCAGCATAAGAAGGTAAGATTGAAATTGTCTTTAAATCATTTTTTCTCTTAGCAACATCATTTTTTACATATTCATTTTTGTGGACTTGAAGTAATGATCATTTAGTGACTATTGTCTTTAAATACCAAATAGAAACCCCGTCACGTGAATAACAGATCTCTTCATGCAAGCTTTGATTCCATGCAAAATTGTTAAATATTGAAACAATCTTGTAAGTTGAGTTTCAATTATTCCGGTTTCTAATTTCTACTGGTGTGGTCTAATGTTGTATTAGTTCTACCACAGATCAGTTTTGCAAATACAAGTCACATTACTCATTATTTTCTTTGTGTTGCAATTAATAAAAATAACTAGATCTAAGTCTATAGTTTAGAATTTAAGATTAATGGTGATTTAAAAGGTCGTATCTAGTCAGGCATGTGTATAACAGATTTCTAGCACTATGTTTATAGATTAATAGTCTGTGTTTTAAGTATTATTGATCAAAATGATTTCTACGTTTTCCATTGTCAAGAAGGTAGTAAAGTAAATAAATCATCCCTCTCCGATGATCTTGTGTCGTTTTCCTTCGACTGTAGTTTTGCAGTTTTGCTGTGGGTATTGACCTGACCTTTATCCATCTTCTTTTGACATGCATAGGATATTGCCCAAGAGGCTGTAAAGAAGAGGAGACGTGCGACCAGGAAGCCGTACTCTAGGTCCATTGTTGGTGCAACATTGGAAGTCATCCAGAAGAAGAGAGCCGAAAAGCCAGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTGCGGTGCGTTATCTCATGAATGACTGAACTAGAATAGAAATGTTTTATCTCAAGCATACGAATTTATACTGAATCCATTGATTTTGAATTGCATTGCAGTGAGATTAAGGAAAGGATTAAGAAAACCAAGGACGAGAAGAAAGCAAAGAAGGCAGAAGTGTTGGCCAAGTCACAGAAGGCACCAGGTAAGGGTAGCGTTCCCAAGGGAGCAATGCCCAAGGGTCCAAAACTCGGAGGTGGTGGTGGAAAGCGT

mRNA sequence

TGGAATTTCAGGACTGAACTTTGCCGATTCAGTGGTGCCAAGATATATCCTGGGAGGGGCATTAGATTTGTCCGGGCTGATTCTCAGGTGTTCCTCTTTGCCAACTCTAAATGCAAGAGGTACTTTCACAATCGGCTGAAGCCATCGAAGCTGACCTGGACAGCTATGTACAGGAAGCAGCATAAGAAGGATATTGCCCAAGAGGCTGTAAAGAAGAGGAGACGTGCGACCAGGAAGCCGTACTCTAGGTCCATTGTTGGTGCAACATTGGAAGTCATCCAGAAGAAGAGAGCCGAAAAGCCAGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTGCGTGAGATTAAGGAAAGGATTAAGAAAACCAAGGACGAGAAGAAAGCAAAGAAGGCAGAAGTGTTGGCCAAGTCACAGAAGGCACCAGGTAAGGGTAGCGTTCCCAAGGGAGCAATGCCCAAGGGTCCAAAACTCGGAGGTGGTGGTGGAAAGCGT

Coding sequence (CDS)

TGGAATTTCAGGACTGAACTTTGCCGATTCAGTGGTGCCAAGATATATCCTGGGAGGGGCATTAGATTTGTCCGGGCTGATTCTCAGGTGTTCCTCTTTGCCAACTCTAAATGCAAGAGGTACTTTCACAATCGGCTGAAGCCATCGAAGCTGACCTGGACAGCTATGTACAGGAAGCAGCATAAGAAGGATATTGCCCAAGAGGCTGTAAAGAAGAGGAGACGTGCGACCAGGAAGCCGTACTCTAGGTCCATTGTTGGTGCAACATTGGAAGTCATCCAGAAGAAGAGAGCCGAAAAGCCAGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTGCGTGAGATTAAGGAAAGGATTAAGAAAACCAAGGACGAGAAGAAAGCAAAGAAGGCAGAAGTGTTGGCCAAGTCACAGAAGGCACCAGGTAAGGGTAGCGTTCCCAAGGGAGCAATGCCCAAGGGTCCAAAACTCGGAGGTGGTGGTGGAAAGCGT

Protein sequence

WNFRTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR

Homology

[Close]

BLAST of MS019579 vs. NCBI nr
Match: XP_022144771.1 (60S ribosomal protein L24 [Momordica charantia])

HSP 1 Score: 299.7 bits (766), Expect = 1.6e-77
Identity = 160/161 (99.38%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 4   RTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63
           +TELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK
Sbjct: 4   KTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63

Query: 64  DIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123
           DIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK
Sbjct: 64  DIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123

Query: 124 DEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 165
           DEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR
Sbjct: 124 DEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 164

[Close]

BLAST of MS019579 vs. NCBI nr
Match: XP_022951028.1 (60S ribosomal protein L24 [Cucurbita moschata] >XP_023005944.1 60S ribosomal protein L24 [Cucurbita maxima] >XP_023538770.1 60S ribosomal protein L24 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.9 bits (751), Expect = 8.6e-76
Identity = 155/161 (96.27%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 4   RTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63
           +TELCRFSGAKIYPGRGIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK
Sbjct: 4   KTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63

Query: 64  DIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123
           DIAQEAVKKRRRAT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK
Sbjct: 64  DIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123

Query: 124 DEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 165
           DEKKAKKAEV+AKSQKAPGKG+VPKGA PKGPKLGGGGGKR
Sbjct: 124 DEKKAKKAEVMAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of MS019579 vs. NCBI nr
Match: KAG6596527.1 (60S ribosomal protein L24, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028061.1 60S ribosomal protein L24 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 293.9 bits (751), Expect = 8.6e-76
Identity = 155/161 (96.27%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 4   RTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63
           +TELCRFSGAKIYPGRGIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK
Sbjct: 4   KTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63

Query: 64  DIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123
           DIAQEAVKKRRRAT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK
Sbjct: 64  DIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123

Query: 124 DEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 165
           DEKKAKKAEV+AKSQKAPGKG+VPKGA PKGPKLGGGGGKR
Sbjct: 124 DEKKAKKAEVIAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of MS019579 vs. NCBI nr
Match: XP_022983123.1 (60S ribosomal protein L24-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 291.6 bits (745), Expect = 4.3e-75
Identity = 155/164 (94.51%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   WNFRTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           W FRTELCRFSG+KIYPGRGIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 4   WLFRTELCRFSGSKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 63

Query: 61  HKKDIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 64  HKKDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 123

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVLAKSQKAPGKG+V KG   KGPKLGGGGGKR
Sbjct: 124 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 167

[Close]

BLAST of MS019579 vs. NCBI nr
Match: XP_004137862.1 (60S ribosomal protein L24 [Cucumis sativus] >KGN59041.1 hypothetical protein Csa_002195 [Cucumis sativus])

HSP 1 Score: 285.8 bits (730), Expect = 2.3e-73
Identity = 153/161 (95.03%), Postives = 157/161 (97.52%), Query Frame = 0


Query: 4   RTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63
           +TELCRFSGAKIYPG+GIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK
Sbjct: 4   KTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63

Query: 64  DIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123
           DIAQEAVKKRRRAT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK
Sbjct: 64  DIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123

Query: 124 DEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 165
           DEKKAKKAEVLAKSQKAPGKG+V KG   KGPKLGGGGGKR
Sbjct: 124 DEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of MS019579 vs. ExPASy Swiss-Prot
Match: O65743 (60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 1.6e-72
Identity = 143/160 (89.38%), Postives = 153/160 (95.62%), Query Frame = 0


Query: 4   RTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63
           +TELCRFSGAKIYPGRGIRF+R DSQVFLF NSKCKRYFHNRLKPSKLTWTAM+RKQHKK
Sbjct: 4   KTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKK 63

Query: 64  DIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123
           D AQEAVKKRRRAT+KPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIKKTK
Sbjct: 64  DAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTK 123

Query: 124 DEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGK 164
           DEKKAKKAEV +K+QK+ GKG+V KGA+PKGPK+GGGGGK
Sbjct: 124 DEKKAKKAEVASKAQKSQGKGNVQKGALPKGPKMGGGGGK 163

[Close]

BLAST of MS019579 vs. ExPASy Swiss-Prot
Match: Q9FUL4 (60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 8.1e-69
Identity = 141/157 (89.81%), Postives = 149/157 (94.90%), Query Frame = 0


Query: 4   RTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63
           +TELCRFSGAKIYPG+GIRF+R+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK
Sbjct: 4   KTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63

Query: 64  DIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123
           DIAQEAVKKRRR T+KPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTK
Sbjct: 64  DIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 123

Query: 124 DEKKAKKAEVLAKSQKAPGKGSVPK-GAMPKGPKLGG 160
           DEKKAKKAEV  KSQK+ GKGS+ K GA PKGPKLGG
Sbjct: 124 DEKKAKKAEV-TKSQKSQGKGSIAKGGAQPKGPKLGG 159

[Close]

BLAST of MS019579 vs. ExPASy Swiss-Prot
Match: Q42347 (60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2)

HSP 1 Score: 257.3 bits (656), Expect = 1.2e-67
Identity = 135/161 (83.85%), Postives = 147/161 (91.30%), Query Frame = 0


Query: 4   RTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63
           +TELCRFSG KIYPGRGIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKK
Sbjct: 4   KTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKK 63

Query: 64  DIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123
           D AQEAVK+RRRAT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK
Sbjct: 64  DAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123

Query: 124 DEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 165
           DEKKAKK E  +K QK+  KG++PK A PK  K+GGGGG+R
Sbjct: 124 DEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of MS019579 vs. ExPASy Swiss-Prot
Match: P50888 (60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.4e-66
Identity = 136/161 (84.47%), Postives = 145/161 (90.06%), Query Frame = 0


Query: 4   RTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63
           +TELCRFSG KIYPG+GIRF+R+DSQVFLFANSKCKRYFHNRLKP+KL WTAMYRKQHKK
Sbjct: 4   KTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKK 63

Query: 64  DIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123
           DI  EA KKRRR T+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK
Sbjct: 64  DIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123

Query: 124 DEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 165
           DEKKAKKAEV    +   GKG+V KG+  KGPKLGGGGGKR
Sbjct: 124 DEKKAKKAEVTKSQKSQGGKGAVQKGS--KGPKLGGGGGKR 162

[Close]

BLAST of MS019579 vs. ExPASy Swiss-Prot
Match: P38666 (60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2)

HSP 1 Score: 249.2 bits (635), Expect = 3.2e-65
Identity = 136/162 (83.95%), Postives = 145/162 (89.51%), Query Frame = 0


Query: 4   RTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63
           +TELCRFSG KIYPGRGIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKK
Sbjct: 4   KTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKK 63

Query: 64  DIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123
           D AQEAVK+RRRAT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK
Sbjct: 64  DAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123

Query: 124 DEKKAKKAEVLAKSQKAPGKGSVPK-GAMPKGPKLGGGGGKR 165
           DEKKAKK E  +K QK   K + PK  A  KGPK+GGGGGKR
Sbjct: 124 DEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of MS019579 vs. ExPASy TrEMBL
Match: A0A6J1CUE5 (60S ribosomal protein L24 OS=Momordica charantia OX=3673 GN=LOC111014379 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.6e-78
Identity = 160/161 (99.38%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 4   RTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63
           +TELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK
Sbjct: 4   KTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63

Query: 64  DIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123
           DIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK
Sbjct: 64  DIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123

Query: 124 DEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 165
           DEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR
Sbjct: 124 DEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 164

[Close]

BLAST of MS019579 vs. ExPASy TrEMBL
Match: A0A6J1L0R7 (60S ribosomal protein L24 OS=Cucurbita maxima OX=3661 GN=LOC111498802 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.2e-76
Identity = 155/161 (96.27%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 4   RTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63
           +TELCRFSGAKIYPGRGIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK
Sbjct: 4   KTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63

Query: 64  DIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123
           DIAQEAVKKRRRAT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK
Sbjct: 64  DIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123

Query: 124 DEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 165
           DEKKAKKAEV+AKSQKAPGKG+VPKGA PKGPKLGGGGGKR
Sbjct: 124 DEKKAKKAEVMAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of MS019579 vs. ExPASy TrEMBL
Match: A0A6J1GGJ5 (60S ribosomal protein L24 OS=Cucurbita moschata OX=3662 GN=LOC111453997 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.2e-76
Identity = 155/161 (96.27%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 4   RTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63
           +TELCRFSGAKIYPGRGIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK
Sbjct: 4   KTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63

Query: 64  DIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123
           DIAQEAVKKRRRAT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK
Sbjct: 64  DIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123

Query: 124 DEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 165
           DEKKAKKAEV+AKSQKAPGKG+VPKGA PKGPKLGGGGGKR
Sbjct: 124 DEKKAKKAEVMAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of MS019579 vs. ExPASy TrEMBL
Match: A0A6J1J6V6 (60S ribosomal protein L24-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481766 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.1e-75
Identity = 155/164 (94.51%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   WNFRTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           W FRTELCRFSG+KIYPGRGIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 4   WLFRTELCRFSGSKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 63

Query: 61  HKKDIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 64  HKKDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 123

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVLAKSQKAPGKG+V KG   KGPKLGGGGGKR
Sbjct: 124 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 167

[Close]

BLAST of MS019579 vs. ExPASy TrEMBL
Match: A0A0A0LGG6 (TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G748210 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 153/161 (95.03%), Postives = 157/161 (97.52%), Query Frame = 0


Query: 4   RTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63
           +TELCRFSGAKIYPG+GIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK
Sbjct: 4   KTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63

Query: 64  DIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123
           DIAQEAVKKRRRAT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK
Sbjct: 64  DIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123

Query: 124 DEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 165
           DEKKAKKAEVLAKSQKAPGKG+V KG   KGPKLGGGGGKR
Sbjct: 124 DEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of MS019579 vs. TAIR 10
Match: AT2G36620.1 (ribosomal protein L24 )

HSP 1 Score: 257.3 bits (656), Expect = 8.3e-69
Identity = 135/161 (83.85%), Postives = 147/161 (91.30%), Query Frame = 0


Query: 4   RTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63
           +TELCRFSG KIYPGRGIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKK
Sbjct: 4   KTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKK 63

Query: 64  DIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123
           D AQEAVK+RRRAT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK
Sbjct: 64  DAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123

Query: 124 DEKKAKKAEVLAKSQKAPGKGSVPKGAMPKGPKLGGGGGKR 165
           DEKKAKK E  +K QK+  KG++PK A PK  K+GGGGG+R
Sbjct: 124 DEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of MS019579 vs. TAIR 10
Match: AT3G53020.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 249.2 bits (635), Expect = 2.3e-66
Identity = 136/162 (83.95%), Postives = 145/162 (89.51%), Query Frame = 0


Query: 4   RTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63
           +TELCRFSG KIYPGRGIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKK
Sbjct: 4   KTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKK 63

Query: 64  DIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123
           D AQEAVK+RRRAT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK
Sbjct: 64  DAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK 123

Query: 124 DEKKAKKAEVLAKSQKAPGKGSVPK-GAMPKGPKLGGGGGKR 165
           DEKKAKK E  +K QK   K + PK  A  KGPK+GGGGGKR
Sbjct: 124 DEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of MS019579 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 71.2 bits (173), Expect = 8.5e-13
Identity = 49/127 (38.58%), Postives = 70/127 (55.12%), Query Frame = 0


Query: 4   RTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63
           R E C F  + IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H K
Sbjct: 2   RLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGK 61

Query: 64  DIAQEAV----KKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERI 123
           D+ ++      KKR R  R  Y R++   TL  I+K      ++R  AREA  + I+ R+
Sbjct: 62  DMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENRL 119

Query: 124 KKTKDEK 127
           K  K +K
Sbjct: 122 KPNKQKK 119

[Close]

BLAST of MS019579 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 71.2 bits (173), Expect = 8.5e-13
Identity = 49/127 (38.58%), Postives = 70/127 (55.12%), Query Frame = 0


Query: 4   RTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKK 63
           R E C F  + IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H K
Sbjct: 2   RLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGK 61

Query: 64  DIAQEAV----KKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERI 123
           D+ ++      KKR R  R  Y R++   TL  I+K      ++R  AREA  + I+ R+
Sbjct: 62  DMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENRL 119

Query: 124 KKTKDEK 127
           K  K +K
Sbjct: 122 KPNKQKK 119

The following BLAST results are available for this feature:

BLAST of MS019579 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144771.1	1.6e-77	99.38	60S ribosomal protein L24 [Momordica charantia]	[more]
XP_022951028.1	8.6e-76	96.27	60S ribosomal protein L24 [Cucurbita moschata] >XP_023005944.1 60S ribosomal pro...	[more]
KAG6596527.1	8.6e-76	96.27	60S ribosomal protein L24, partial [Cucurbita argyrosperma subsp. sororia] >KAG7...	[more]
XP_022983123.1	4.3e-75	94.51	60S ribosomal protein L24-like isoform X1 [Cucurbita maxima]	[more]
XP_004137862.1	2.3e-73	95.03	60S ribosomal protein L24 [Cucumis sativus] >KGN59041.1 hypothetical protein Csa...	[more]

BLAST of MS019579 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65743	1.6e-72	89.38	60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1	[more]
Q9FUL4	8.1e-69	89.81	60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1	[more]
Q42347	1.2e-67	83.85	60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2	[more]
P50888	6.4e-66	84.47	60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1	[more]
P38666	3.2e-65	83.95	60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2	[more]

BLAST of MS019579 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CUE5	7.6e-78	99.38	60S ribosomal protein L24 OS=Momordica charantia OX=3673 GN=LOC111014379 PE=3 SV...	[more]
A0A6J1L0R7	4.2e-76	96.27	60S ribosomal protein L24 OS=Cucurbita maxima OX=3661 GN=LOC111498802 PE=3 SV=1	[more]
A0A6J1GGJ5	4.2e-76	96.27	60S ribosomal protein L24 OS=Cucurbita moschata OX=3662 GN=LOC111453997 PE=3 SV=...	[more]
A0A6J1J6V6	2.1e-75	94.51	60S ribosomal protein L24-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A0A0LGG6	1.1e-73	95.03	TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G748210 PE=3 ...	[more]

BLAST of MS019579 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36620.1	8.3e-69	83.85	ribosomal protein L24	[more]
AT3G53020.1	2.3e-66	83.95	Ribosomal protein L24e family protein	[more]
AT2G44860.1	8.5e-13	38.58	Ribosomal protein L24e family protein	[more]
AT2G44860.2	8.5e-13	38.58	Ribosomal protein L24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..136
None	No IPR available	GENE3D	6.10.250.1270		coord: 69..138 e-value: 4.7E-22 score: 79.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..164
None	No IPR available	PANTHER	PTHR10792:SF40	60S RIBOSOMAL PROTEIN L24	coord: 3..164
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 6..58
IPR011017	TRASH domain	SMART	SM00746	4TRASH	coord: 8..46 e-value: 5.4E-4 score: 29.3
IPR000988	Ribosomal protein L24e-related	PFAM	PF01246	Ribosomal_L24e	coord: 4..67 e-value: 2.7E-28 score: 98.0
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 3..164
IPR000988	Ribosomal protein L24e-related	CDD	cd00472	Ribosomal_L24e_L24	coord: 4..56 e-value: 4.07546E-20 score: 76.8422
IPR038630	Ribosomal protein L24e/L24 superfamily	GENE3D	2.30.170.20	Ribosomal protein L24e	coord: 3..64 e-value: 2.6E-33 score: 116.1
IPR023442	Ribosomal protein L24e, conserved site	PROSITE	PS01073	RIBOSOMAL_L24E	coord: 10..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019579.1	MS019579.1	mRNA