MS019551 (gene) Bitter gourd (TR) v1

Overview


Name	MS019551
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribulose bisphosphate carboxylase large chain
Location	scaffold729: 381683 .. 381769 (+)
RNA-Seq Expression	MS019551
Synteny	MS019551

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTAACTATTTAACAAGTGGATTTACTGTAAATACTAGTTTGGCTCATTATTGTCAATATAATGGTCTACTTCTTCAAATTCAT

mRNA sequence

ATGCCTAACTATTTAACAAGTGGATTTACTGTAAATACTAGTTTGGCTCATTATTGTCAATATAATGGTCTACTTCTTCAAATTCAT

Coding sequence (CDS)

ATGCCTAACTATTTAACAAGTGGATTTACTGTAAATACTAGTTTGGCTCATTATTGTCAATATAATGGTCTACTTCTTCAAATTCAT

Protein sequence

MPNYLTSGFTVNTSLAHYCQYNGLLLQIH

Homology

[Close]

BLAST of MS019551 vs. NCBI nr
Match: YP_009489754.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Paeonia suffruticosa] >AWH11024.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Paeonia suffruticosa])

HSP 1 Score: 53.9 bits (128), Expect = 2.7e-04
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   MPNYLTSGFTVNTSLAHYCQYNGLLLQIH 30
           M +YLT GFT NTSLAHYC+YNGLLL IH
Sbjct: 266 MHDYLTGGFTANTSLAHYCRYNGLLLHIH 294

[Close]

BLAST of MS019551 vs. NCBI nr
Match: AEK34306.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Oenothera glazioviana])

HSP 1 Score: 53.5 bits (127), Expect = 3.5e-04
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   MPNYLTSGFTVNTSLAHYCQYNGLLLQIH 30
           MP+YLT GFT NTSLAHYC+ NGLLL IH
Sbjct: 251 MPDYLTGGFTANTSLAHYCRDNGLLLHIH 279

[Close]

BLAST of MS019551 vs. NCBI nr
Match: MBA0708715.1 (hypothetical protein [Gossypium laxum])

HSP 1 Score: 53.5 bits (127), Expect = 3.5e-04
Identity = 24/29 (82.76%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 1  MPNYLTSGFTVNTSLAHYCQYNGLLLQIH 30
          M NYLT GFT NTSLAHYCQ NGLLL IH
Sbjct: 1  MHNYLTGGFTANTSLAHYCQDNGLLLHIH 29

[Close]

BLAST of MS019551 vs. NCBI nr
Match: WP_202958764.1 (form I ribulose bisphosphate carboxylase large subunit [Solirubrobacter sp. CPCC 204708] >MBE2321138.1 form I ribulose bisphosphate carboxylase large subunit [Solirubrobacter sp. CPCC 204708])

HSP 1 Score: 53.5 bits (127), Expect = 3.5e-04
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   MPNYLTSGFTVNTSLAHYCQYNGLLLQIH 30
           MP+YLT GFT NTSLAHYC+ NGLLL IH
Sbjct: 266 MPDYLTGGFTANTSLAHYCRDNGLLLHIH 294

[Close]

BLAST of MS019551 vs. NCBI nr
Match: ACR07793.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Durandea pentagyna])

HSP 1 Score: 53.5 bits (127), Expect = 3.5e-04
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   MPNYLTSGFTVNTSLAHYCQYNGLLLQIH 30
           MP+YLT GFT NTSLAHYC+ NGLLL IH
Sbjct: 260 MPDYLTGGFTANTSLAHYCRDNGLLLHIH 288

[Close]

BLAST of MS019551 vs. ExPASy Swiss-Prot
Match: A8W3D6 (Ribulose bisphosphate carboxylase large chain OS=Cuscuta exaltata OX=476139 GN=rbcL PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.9e-06
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 1   MPNYLTSGFTVNTSLAHYCQYNGLLLQIH 30
           M +YLT GFT NTSLAHYC+ NGLLL IH
Sbjct: 266 MHDYLTGGFTANTSLAHYCRENGLLLHIH 294

[Close]

BLAST of MS019551 vs. ExPASy Swiss-Prot
Match: P30401 (Ribulose bisphosphate carboxylase large chain OS=Cuscuta reflexa OX=4129 GN=rbcL PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.9e-06
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 1   MPNYLTSGFTVNTSLAHYCQYNGLLLQIH 30
           M +YLT GFT NTSLAHYC+ NGLLL IH
Sbjct: 266 MHDYLTGGFTANTSLAHYCRENGLLLHIH 294

[Close]

BLAST of MS019551 vs. ExPASy Swiss-Prot
Match: O78258 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Abies firma OX=78260 GN=rbcL PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 5.0e-06
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 1   MPNYLTSGFTVNTSLAHYCQYNGLLLQIH 30
           M +YLT GFT NTSLAHYC+ NGLLL IH
Sbjct: 259 MHDYLTGGFTANTSLAHYCRDNGLLLHIH 287

[Close]

BLAST of MS019551 vs. ExPASy Swiss-Prot
Match: O78259 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Abies homolepis OX=78261 GN=rbcL PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 5.0e-06
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 1   MPNYLTSGFTVNTSLAHYCQYNGLLLQIH 30
           M +YLT GFT NTSLAHYC+ NGLLL IH
Sbjct: 259 MHDYLTGGFTANTSLAHYCRDNGLLLHIH 287

[Close]

BLAST of MS019551 vs. ExPASy Swiss-Prot
Match: O78262 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Abies sachalinensis OX=78264 GN=rbcL PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 5.0e-06
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 1   MPNYLTSGFTVNTSLAHYCQYNGLLLQIH 30
           M +YLT GFT NTSLAHYC+ NGLLL IH
Sbjct: 259 MHDYLTGGFTANTSLAHYCRDNGLLLHIH 287

[Close]

BLAST of MS019551 vs. ExPASy TrEMBL
Match: A0A2S1P3K4 (Ribulose bisphosphate carboxylase large chain OS=Paeonia suffruticosa OX=45171 GN=rbcL PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-04
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   MPNYLTSGFTVNTSLAHYCQYNGLLLQIH 30
           M +YLT GFT NTSLAHYC+YNGLLL IH
Sbjct: 266 MHDYLTGGFTANTSLAHYCRYNGLLLHIH 294

[Close]

BLAST of MS019551 vs. ExPASy TrEMBL
Match: O78617 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Meiracyllium trinasutum OX=38189 GN=rbcL PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-04
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   MPNYLTSGFTVNTSLAHYCQYNGLLLQIH 30
           MP+YLT GFT NTSLAHYC+ NGLLL IH
Sbjct: 246 MPDYLTGGFTANTSLAHYCRDNGLLLHIH 274

[Close]

BLAST of MS019551 vs. ExPASy TrEMBL
Match: G0WZ32 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Oenothera glazioviana OX=482428 GN=rbcL PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-04
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   MPNYLTSGFTVNTSLAHYCQYNGLLLQIH 30
           MP+YLT GFT NTSLAHYC+ NGLLL IH
Sbjct: 251 MPDYLTGGFTANTSLAHYCRDNGLLLHIH 279

[Close]

BLAST of MS019551 vs. ExPASy TrEMBL
Match: C7A5X9 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Durandea pentagyna OX=289635 GN=rbcL PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-04
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   MPNYLTSGFTVNTSLAHYCQYNGLLLQIH 30
           MP+YLT GFT NTSLAHYC+ NGLLL IH
Sbjct: 260 MPDYLTGGFTANTSLAHYCRDNGLLLHIH 288

[Close]

BLAST of MS019551 vs. ExPASy TrEMBL
Match: A0A7J8ZAC0 (RuBisCO_large domain-containing protein OS=Gossypium laxum OX=34288 GN=Golax_023811 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-04
Identity = 24/29 (82.76%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 1  MPNYLTSGFTVNTSLAHYCQYNGLLLQIH 30
          M NYLT GFT NTSLAHYCQ NGLLL IH
Sbjct: 1  MHNYLTGGFTANTSLAHYCQDNGLLLHIH 29

[Close]

BLAST of MS019551 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 48.9 bits (115), Expect = 8.0e-07
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 1   MPNYLTSGFTVNTSLAHYCQYNGLLLQIH 30
           M +YLT GFT NTSL+HYC+ NGLLL IH
Sbjct: 266 MHDYLTGGFTANTSLSHYCRDNGLLLHIH 294

The following BLAST results are available for this feature:

BLAST of MS019551 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009489754.1	2.7e-04	79.31	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Paeonia suffrutic...	[more]
AEK34306.1	3.5e-04	79.31	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Oenother...	[more]
MBA0708715.1	3.5e-04	82.76	hypothetical protein [Gossypium laxum]	[more]
WP_202958764.1	3.5e-04	79.31	form I ribulose bisphosphate carboxylase large subunit [Solirubrobacter sp. CPCC...	[more]
ACR07793.1	3.5e-04	79.31	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Durandea...	[more]

BLAST of MS019551 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8W3D6	3.9e-06	75.86	Ribulose bisphosphate carboxylase large chain OS=Cuscuta exaltata OX=476139 GN=r...	[more]
P30401	3.9e-06	75.86	Ribulose bisphosphate carboxylase large chain OS=Cuscuta reflexa OX=4129 GN=rbcL...	[more]
O78258	5.0e-06	75.86	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Abies firma OX=78260...	[more]
O78259	5.0e-06	75.86	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Abies homolepis OX=7...	[more]
O78262	5.0e-06	75.86	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Abies sachalinensis ...	[more]

BLAST of MS019551 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2S1P3K4	1.3e-04	79.31	Ribulose bisphosphate carboxylase large chain OS=Paeonia suffruticosa OX=45171 G...	[more]
O78617	1.7e-04	79.31	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Meiracyllium trinasu...	[more]
G0WZ32	1.7e-04	79.31	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Oenothera glaziovian...	[more]
C7A5X9	1.7e-04	79.31	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Durandea pentagyna O...	[more]
A0A7J8ZAC0	1.7e-04	82.76	RuBisCO_large domain-containing protein OS=Gossypium laxum OX=34288 GN=Golax_023...	[more]

BLAST of MS019551 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00490.1	8.0e-07	72.41	ribulose-bisphosphate carboxylases	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	SUPERFAMILY	51649	RuBisCo, C-terminal domain	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019551.1	MS019551.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0000287	magnesium ion binding