MS019540 (gene) Bitter gourd (TR) v1

Overview


Name	MS019540
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein YIP
Location	scaffold729: 278924 .. 279679 (-)
RNA-Seq Expression	MS019540
Synteny	MS019540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGACGGTGAAGAAGGAGTTCGCTGTACCGCCGGTGGTTTTCCCATCGGGCGGTAACCCCAATCTTCAGCAAAGGCGGGTGGCCACGGCGCCGTTTCAGCCTCCTCGGTCGACTGGCTCCAGTATTCCGTTCATGTCCTTCGACATCGGATCCGCCGCCGCTGCTTCCACCTCCTCCGCCGGCATCTACGGTGGTCCTATCGGTGGTGGGTCTCTCCCTGGCGGCGCTAATTTCGAAGACGAAGAACCACTCCTCGATGAGCTCGGGATCCACCCGGATCAAATCTGGAAGAAAACTAAGTCGATCCTGAATCCGTTCCGGGTCAAACCAGATGTGCACAAGGACTCGGACTTGTCCGGACCGATTCTCCTTTACATGTTCTTCGGCCTCTTTCAGTTGCTCGCCGGCAAGATCCAATTTGGGGTGATACTGGGATGGATCGTGGTTTCTTCGATCTTCTTGTACGTTGTGTTCAATATGTTGGCTGGACGAAATGGCAATTTGAACCTTCACACATGCACTAGCGTTGTTGGGTACTGTATGTTGCCCGTCGTGGTTTTGTCGGCGGTGTCCTTGTTCCTTCCGCAGACGGGCATAGTGAGATTCGCAGTCGCCGGAGTTTTTGTGTTGTGGGCGACGAGGATTTGTACGAGTCTTATGGTTTCTCTTGCTGATGGTGGGGATGAGCACCGTGGGTTGATAGCGTATGCTTGTTTTTTGATTTTCACTCTGTTTTCGCTGTTAGTTATATTT

mRNA sequence

ATGGGGACGGTGAAGAAGGAGTTCGCTGTACCGCCGGTGGTTTTCCCATCGGGCGGTAACCCCAATCTTCAGCAAAGGCGGGTGGCCACGGCGCCGTTTCAGCCTCCTCGGTCGACTGGCTCCAGTATTCCGTTCATGTCCTTCGACATCGGATCCGCCGCCGCTGCTTCCACCTCCTCCGCCGGCATCTACGGTGGTCCTATCGGTGGTGGGTCTCTCCCTGGCGGCGCTAATTTCGAAGACGAAGAACCACTCCTCGATGAGCTCGGGATCCACCCGGATCAAATCTGGAAGAAAACTAAGTCGATCCTGAATCCGTTCCGGGTCAAACCAGATGTGCACAAGGACTCGGACTTGTCCGGACCGATTCTCCTTTACATGTTCTTCGGCCTCTTTCAGTTGCTCGCCGGCAAGATCCAATTTGGGGTGATACTGGGATGGATCGTGGTTTCTTCGATCTTCTTGTACGTTGTGTTCAATATGTTGGCTGGACGAAATGGCAATTTGAACCTTCACACATGCACTAGCGTTGTTGGGTACTGTATGTTGCCCGTCGTGGTTTTGTCGGCGGTGTCCTTGTTCCTTCCGCAGACGGGCATAGTGAGATTCGCAGTCGCCGGAGTTTTTGTGTTGTGGGCGACGAGGATTTGTACGAGTCTTATGGTTTCTCTTGCTGATGGTGGGGATGAGCACCGTGGGTTGATAGCGTATGCTTGTTTTTTGATTTTCACTCTGTTTTCGCTGTTAGTTATATTT

Coding sequence (CDS)

ATGGGGACGGTGAAGAAGGAGTTCGCTGTACCGCCGGTGGTTTTCCCATCGGGCGGTAACCCCAATCTTCAGCAAAGGCGGGTGGCCACGGCGCCGTTTCAGCCTCCTCGGTCGACTGGCTCCAGTATTCCGTTCATGTCCTTCGACATCGGATCCGCCGCCGCTGCTTCCACCTCCTCCGCCGGCATCTACGGTGGTCCTATCGGTGGTGGGTCTCTCCCTGGCGGCGCTAATTTCGAAGACGAAGAACCACTCCTCGATGAGCTCGGGATCCACCCGGATCAAATCTGGAAGAAAACTAAGTCGATCCTGAATCCGTTCCGGGTCAAACCAGATGTGCACAAGGACTCGGACTTGTCCGGACCGATTCTCCTTTACATGTTCTTCGGCCTCTTTCAGTTGCTCGCCGGCAAGATCCAATTTGGGGTGATACTGGGATGGATCGTGGTTTCTTCGATCTTCTTGTACGTTGTGTTCAATATGTTGGCTGGACGAAATGGCAATTTGAACCTTCACACATGCACTAGCGTTGTTGGGTACTGTATGTTGCCCGTCGTGGTTTTGTCGGCGGTGTCCTTGTTCCTTCCGCAGACGGGCATAGTGAGATTCGCAGTCGCCGGAGTTTTTGTGTTGTGGGCGACGAGGATTTGTACGAGTCTTATGGTTTCTCTTGCTGATGGTGGGGATGAGCACCGTGGGTTGATAGCGTATGCTTGTTTTTTGATTTTCACTCTGTTTTCGCTGTTAGTTATATTT

Protein sequence

MGTVKKEFAVPPVVFPSGGNPNLQQRRVATAPFQPPRSTGSSIPFMSFDIGSAAAASTSSAGIYGGPIGGGSLPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDLSGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGYCMLPVVVLSAVSLFLPQTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACFLIFTLFSLLVIF

Homology

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BLAST of MS019540 vs. NCBI nr
Match: XP_022144590.1 (protein YIPF5 homolog isoform X1 [Momordica charantia] >XP_022144591.1 protein YIPF5 homolog isoform X2 [Momordica charantia] >XP_022144592.1 protein YIPF5 homolog isoform X3 [Momordica charantia])

HSP 1 Score: 493.8 bits (1270), Expect = 8.7e-136
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRVATAPFQPPRSTGSSIPFMSFDIGSAAAASTSS 60
           MGTVKKEFAVPPVVFPSGGNPNLQQRRVATAPFQPPRSTGSSIPFMSFDIGSAAAASTSS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRVATAPFQPPRSTGSSIPFMSFDIGSAAAASTSS 60

Query: 61  AGIYGGPIGGGSLPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDLS 120
           AGIYGGPIGGGSLPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDLS
Sbjct: 61  AGIYGGPIGGGSLPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDLS 120

Query: 121 GPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGY 180
           GPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGY
Sbjct: 121 GPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGY 180

Query: 181 CMLPVVVLSAVSLFLPQTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACF 240
           CMLPVVVLSAVSLFLPQTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACF
Sbjct: 181 CMLPVVVLSAVSLFLPQTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACF 240

Query: 241 LIFTLFSLLVIF 253
           LIFTLFSLLVIF
Sbjct: 241 LIFTLFSLLVIF 252

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BLAST of MS019540 vs. NCBI nr
Match: XP_022983078.1 (protein YIPF5 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 480.3 bits (1235), Expect = 1.0e-131
Identity = 244/252 (96.83%), Postives = 246/252 (97.62%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRVATAPFQPPRSTGSSIPFMSFDIGSAAAASTSS 60
           MGTVKKEFAVPPVVFPSGGNPNL QR VATAPFQPPRSTGSSIPFMSFDIGSAAAASTSS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLHQRGVATAPFQPPRSTGSSIPFMSFDIGSAAAASTSS 60

Query: 61  AGIYGGPIGGGSLPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDLS 120
            GIYGGPIGGGS+PGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDLS
Sbjct: 61  GGIYGGPIGGGSVPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDLS 120

Query: 121 GPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGY 180
           GPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGY
Sbjct: 121 GPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGY 180

Query: 181 CMLPVVVLSAVSLFLPQTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACF 240
           CMLPVVV SAVSLFLPQ GI+RF VAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACF
Sbjct: 181 CMLPVVVFSAVSLFLPQAGILRFGVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACF 240

Query: 241 LIFTLFSLLVIF 253
           LIFTLFSLLVIF
Sbjct: 241 LIFTLFSLLVIF 252

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BLAST of MS019540 vs. NCBI nr
Match: XP_004153735.2 (protein YIPF5 homolog [Cucumis sativus])

HSP 1 Score: 480.3 bits (1235), Expect = 1.0e-131
Identity = 246/253 (97.23%), Postives = 248/253 (98.02%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRR-VATAPFQPPRSTGSSIPFMSFDIGSAAAASTS 60
           MGTVKKEFAVPPVVFPSGGNPNLQQRR VATAPFQPPR TGSSIPFMSFDIGSAAAASTS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60

Query: 61  SAGIYGGPIGGGSLPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120
           S  IYGGPIGGGS+PGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL
Sbjct: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120

Query: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180
           SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG
Sbjct: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180

Query: 181 YCMLPVVVLSAVSLFLPQTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYAC 240
           YCMLPVVVLSAVSLFLPQ G+VRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYAC
Sbjct: 181 YCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYAC 240

Query: 241 FLIFTLFSLLVIF 253
           FLIFTLFSLLVIF
Sbjct: 241 FLIFTLFSLLVIF 253

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BLAST of MS019540 vs. NCBI nr
Match: XP_008442831.1 (PREDICTED: protein YIPF5 homolog [Cucumis melo])

HSP 1 Score: 479.2 bits (1232), Expect = 2.2e-131
Identity = 245/253 (96.84%), Postives = 248/253 (98.02%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRR-VATAPFQPPRSTGSSIPFMSFDIGSAAAASTS 60
           MGTVKKEFAVPPVVFPSGGNPNLQQRR VATAPFQPPR TGSSIPFMSFDIGSAAAASTS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60

Query: 61  SAGIYGGPIGGGSLPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120
           S  IYGGPIGGGS+PGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL
Sbjct: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120

Query: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180
           SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG
Sbjct: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180

Query: 181 YCMLPVVVLSAVSLFLPQTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYAC 240
           YCMLPVVVLSAVSLFLPQ G++RFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYAC
Sbjct: 181 YCMLPVVVLSAVSLFLPQAGLLRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYAC 240

Query: 241 FLIFTLFSLLVIF 253
           FLIFTLFSLLVIF
Sbjct: 241 FLIFTLFSLLVIF 253

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BLAST of MS019540 vs. NCBI nr
Match: XP_022927148.1 (protein YIPF5 homolog [Cucurbita moschata])

HSP 1 Score: 478.8 bits (1231), Expect = 2.9e-131
Identity = 244/252 (96.83%), Postives = 247/252 (98.02%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRVATAPFQPPRSTGSSIPFMSFDIGSAAAASTSS 60
           MGTVKKEFAVPPVVFPSGGNPNLQQRRVATAPFQPPRSTGSSIPFMSFDIGSAAAASTSS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRVATAPFQPPRSTGSSIPFMSFDIGSAAAASTSS 60

Query: 61  AGIYGGPIGGGSLPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDLS 120
             IYGG I GGS+PGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRV+PDVHKDSDLS
Sbjct: 61  GSIYGGSIVGGSVPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVRPDVHKDSDLS 120

Query: 121 GPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGY 180
           GPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGY
Sbjct: 121 GPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGY 180

Query: 181 CMLPVVVLSAVSLFLPQTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACF 240
           CMLPVVVLSAVSLFLPQ GI+RFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACF
Sbjct: 181 CMLPVVVLSAVSLFLPQAGIIRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACF 240

Query: 241 LIFTLFSLLVIF 253
           LIFTLFSLLVIF
Sbjct: 241 LIFTLFSLLVIF 252

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BLAST of MS019540 vs. ExPASy Swiss-Prot
Match: Q54QY3 (Protein YIPF5 homolog OS=Dictyostelium discoideum OX=44689 GN=yipf5 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-25
Identity = 70/190 (36.84%), Postives = 117/190 (61.58%), Query Frame = 0


Query: 66  GPIGGGSLPGGA--NFEDEEPLLDELGIHPDQIWKKTKSILNPF-RVKPDVHKDSDLSGP 125
           G +GGG   GG   +F++E PLL+ELGI+ D I  KT S+LNP  ++   +  D+DL GP
Sbjct: 26  GRMGGGGGMGGPTDSFDNELPLLEELGINFDHIRSKTLSVLNPLKKIDSHIMDDTDLGGP 85

Query: 126 ILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGYCM 185
           IL  +  G   L++GKIQFG I G  ++  + +Y+V N+++ +   ++++   SV+GYC+
Sbjct: 86  ILFGLLLGFSLLMSGKIQFGYIYGLGLIGCVSMYIVLNLMSEK--GIDIYRVISVLGYCL 145

Query: 186 LPVVVLSAVSLFLPQTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACFLI 245
           LP++ LS  SL +   G+V + + G  ++W+T   + + V +    D+ R L+AY   L+
Sbjct: 146 LPMIFLSFTSLIININGMVGYILIGFAIVWSTYSASKMFVKVLSMIDQ-RILVAYPVGLL 205

Query: 246 FTLFSLLVIF 253
           +T F+L+  F
Sbjct: 206 YTGFALITAF 212

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BLAST of MS019540 vs. ExPASy Swiss-Prot
Match: Q66KA5 (Protein YIPF5 OS=Xenopus tropicalis OX=8364 GN=yipf5 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.5e-25
Identity = 61/178 (34.27%), Postives = 113/178 (63.48%), Query Frame = 0


Query: 76  GANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKP-DVHKDSDLSGPILLYMFFGLFQL 135
           G+ F+DE PLL+ELGI+ D IW+KT ++L+P +V   ++  ++DL+GP++  + FG   L
Sbjct: 82  GSTFDDEPPLLEELGINFDHIWQKTLTVLHPLKVADGNIMNETDLAGPMVFCLAFGATLL 141

Query: 136 LAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGYCMLPVVVLSAVSLF 195
           LAGKIQFG + G   +  + +Y + N+++     ++    +SV+GYC+LP+++LS+ ++ 
Sbjct: 142 LAGKIQFGYVYGISAIGCLGMYCLLNLMS--MTGVSFGCVSSVLGYCLLPMIILSSFAVI 201

Query: 196 LPQTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACFLIFTLFSLLVIF 253
               GI+   +A + + W +   + + +S A   D  + L+AY C L++ +F+L+ +F
Sbjct: 202 FSLQGILGIVLAALIIGWCSFSASKIFIS-ALAMDGQQVLVAYPCALLYGVFALISVF 256

[Close]

BLAST of MS019540 vs. ExPASy Swiss-Prot
Match: Q8N8F6 (Protein YIPF7 OS=Homo sapiens OX=9606 GN=YIPF7 PE=1 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-24
Identity = 62/176 (35.23%), Postives = 108/176 (61.36%), Query Frame = 0


Query: 78  NFEDEEPLLDELGIHPDQIWKKTKSILNPFR-VKPDVHKDSDLSGPILLYMFFGLFQLLA 137
           +F++E PLL+ELGIH D IW+KT ++LNP + V   +  ++DL+GPIL  +  G   LLA
Sbjct: 108 SFDEEPPLLEELGIHFDHIWQKTLTVLNPMKPVDGSIMNETDLTGPILFCVALGATLLLA 167

Query: 138 GKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGYCMLPVVVLSAVSLFLP 197
           GK+QFG + G   +  + ++ + N+++  +  ++     SV+GYC+LP+V+LS  ++F  
Sbjct: 168 GKVQFGYVYGMSAIGCLVIHALLNLMS--SSGVSYGCVASVLGYCLLPMVILSGCAMFFS 227

Query: 198 QTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACFLIFTLFSLLVIF 253
             GI     + V + W +   + + ++ A   +  + L+AY C +++ LF+LL IF
Sbjct: 228 LQGIFGIMSSLVIIGWCSLSASKIFIA-ALHMEGQQLLVAYPCAILYGLFALLTIF 280

[Close]

BLAST of MS019540 vs. ExPASy Swiss-Prot
Match: Q7SXS2 (Protein YIPF5 OS=Xenopus laevis OX=8355 GN=yipf5 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.5e-24
Identity = 61/178 (34.27%), Postives = 111/178 (62.36%), Query Frame = 0


Query: 76  GANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKP-DVHKDSDLSGPILLYMFFGLFQL 135
           G+ F+DE PLL+ELGI+ D IW+KT ++L+P +V    +  ++DL+GP++  + FG   L
Sbjct: 82  GSTFDDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLL 141

Query: 136 LAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGYCMLPVVVLSAVSLF 195
           LAGKIQFG + G   +  + +Y + N+++     ++    +SV+GYC+LP+++LS  ++ 
Sbjct: 142 LAGKIQFGYVYGISAMGCLGMYCLLNLMS--MTGVSFGCVSSVLGYCLLPMIILSTFAVI 201

Query: 196 LPQTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACFLIFTLFSLLVIF 253
               GI+   +A + + W +   + + +S A   D  + L+AY C L++ +F+L+ +F
Sbjct: 202 FSLQGILGIVLAALIIGWCSFSASKIFIS-ALAMDGQQLLVAYPCALLYGVFALISVF 256

[Close]

BLAST of MS019540 vs. ExPASy Swiss-Prot
Match: A5D7K7 (Protein YIPF7 OS=Bos taurus OX=9913 GN=YIPF7 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.6e-23
Identity = 65/177 (36.72%), Postives = 107/177 (60.45%), Query Frame = 0


Query: 78  NFEDEEPLLDELGIHPDQIWKKTKSILNPFR-VKPDVHKDSDLSGPILLYMFFGLFQLLA 137
           +FE+E PLL+ELGI+ D IW+KT ++LNP +     +  ++DL+GPIL  M  G   LLA
Sbjct: 83  SFEEEPPLLEELGINFDHIWQKTLTVLNPMKPADGSIMNETDLTGPILFCMALGATLLLA 142

Query: 138 GKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGYCMLPVVVLSAVSLFLP 197
           GK+QFG + G   +  + ++ + N+++  +  ++     SV+GYC+LP+V+LS+ ++F  
Sbjct: 143 GKVQFGYVYGMSAIGCLGIHALLNLMS--SSGVSYGCVASVLGYCLLPMVILSSCAIFFS 202

Query: 198 QTGIVRFAVAGVFVLWATRICTSLMVS-LADGGDEHRGLIAYACFLIFTLFSLLVIF 253
             G      A V + W +   + +  S LA  G +   LIAY C L++ LF+L+ +F
Sbjct: 203 LQGTFGTVSALVIIGWCSLSASKIFTSALAMEGQQL--LIAYPCALLYGLFALVTVF 255

[Close]

BLAST of MS019540 vs. ExPASy TrEMBL
Match: A0A6J1CU38 (Protein YIP OS=Momordica charantia OX=3673 GN=LOC111014238 PE=3 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 4.2e-136
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRVATAPFQPPRSTGSSIPFMSFDIGSAAAASTSS 60
           MGTVKKEFAVPPVVFPSGGNPNLQQRRVATAPFQPPRSTGSSIPFMSFDIGSAAAASTSS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRVATAPFQPPRSTGSSIPFMSFDIGSAAAASTSS 60

Query: 61  AGIYGGPIGGGSLPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDLS 120
           AGIYGGPIGGGSLPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDLS
Sbjct: 61  AGIYGGPIGGGSLPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDLS 120

Query: 121 GPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGY 180
           GPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGY
Sbjct: 121 GPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGY 180

Query: 181 CMLPVVVLSAVSLFLPQTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACF 240
           CMLPVVVLSAVSLFLPQTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACF
Sbjct: 181 CMLPVVVLSAVSLFLPQTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACF 240

Query: 241 LIFTLFSLLVIF 253
           LIFTLFSLLVIF
Sbjct: 241 LIFTLFSLLVIF 252

[Close]

BLAST of MS019540 vs. ExPASy TrEMBL
Match: A0A6J1J6R1 (Protein YIP OS=Cucurbita maxima OX=3661 GN=LOC111481733 PE=3 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 4.8e-132
Identity = 244/252 (96.83%), Postives = 246/252 (97.62%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRVATAPFQPPRSTGSSIPFMSFDIGSAAAASTSS 60
           MGTVKKEFAVPPVVFPSGGNPNL QR VATAPFQPPRSTGSSIPFMSFDIGSAAAASTSS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLHQRGVATAPFQPPRSTGSSIPFMSFDIGSAAAASTSS 60

Query: 61  AGIYGGPIGGGSLPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDLS 120
            GIYGGPIGGGS+PGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDLS
Sbjct: 61  GGIYGGPIGGGSVPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDLS 120

Query: 121 GPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGY 180
           GPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGY
Sbjct: 121 GPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGY 180

Query: 181 CMLPVVVLSAVSLFLPQTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACF 240
           CMLPVVV SAVSLFLPQ GI+RF VAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACF
Sbjct: 181 CMLPVVVFSAVSLFLPQAGILRFGVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACF 240

Query: 241 LIFTLFSLLVIF 253
           LIFTLFSLLVIF
Sbjct: 241 LIFTLFSLLVIF 252

[Close]

BLAST of MS019540 vs. ExPASy TrEMBL
Match: A0A0A0LGM5 (Protein YIP OS=Cucumis sativus OX=3659 GN=Csa_3G776330 PE=3 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 4.8e-132
Identity = 246/253 (97.23%), Postives = 248/253 (98.02%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRR-VATAPFQPPRSTGSSIPFMSFDIGSAAAASTS 60
           MGTVKKEFAVPPVVFPSGGNPNLQQRR VATAPFQPPR TGSSIPFMSFDIGSAAAASTS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60

Query: 61  SAGIYGGPIGGGSLPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120
           S  IYGGPIGGGS+PGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL
Sbjct: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120

Query: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180
           SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG
Sbjct: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180

Query: 181 YCMLPVVVLSAVSLFLPQTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYAC 240
           YCMLPVVVLSAVSLFLPQ G+VRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYAC
Sbjct: 181 YCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYAC 240

Query: 241 FLIFTLFSLLVIF 253
           FLIFTLFSLLVIF
Sbjct: 241 FLIFTLFSLLVIF 253

[Close]

BLAST of MS019540 vs. ExPASy TrEMBL
Match: A0A1S3B7C5 (Protein YIP OS=Cucumis melo OX=3656 GN=LOC103486599 PE=3 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.1e-131
Identity = 245/253 (96.84%), Postives = 248/253 (98.02%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRR-VATAPFQPPRSTGSSIPFMSFDIGSAAAASTS 60
           MGTVKKEFAVPPVVFPSGGNPNLQQRR VATAPFQPPR TGSSIPFMSFDIGSAAAASTS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60

Query: 61  SAGIYGGPIGGGSLPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120
           S  IYGGPIGGGS+PGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL
Sbjct: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120

Query: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180
           SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG
Sbjct: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180

Query: 181 YCMLPVVVLSAVSLFLPQTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYAC 240
           YCMLPVVVLSAVSLFLPQ G++RFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYAC
Sbjct: 181 YCMLPVVVLSAVSLFLPQAGLLRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYAC 240

Query: 241 FLIFTLFSLLVIF 253
           FLIFTLFSLLVIF
Sbjct: 241 FLIFTLFSLLVIF 253

[Close]

BLAST of MS019540 vs. ExPASy TrEMBL
Match: A0A6J1EK74 (Protein YIP OS=Cucurbita moschata OX=3662 GN=LOC111434052 PE=3 SV=1)

HSP 1 Score: 478.8 bits (1231), Expect = 1.4e-131
Identity = 244/252 (96.83%), Postives = 247/252 (98.02%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRVATAPFQPPRSTGSSIPFMSFDIGSAAAASTSS 60
           MGTVKKEFAVPPVVFPSGGNPNLQQRRVATAPFQPPRSTGSSIPFMSFDIGSAAAASTSS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRVATAPFQPPRSTGSSIPFMSFDIGSAAAASTSS 60

Query: 61  AGIYGGPIGGGSLPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDLS 120
             IYGG I GGS+PGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRV+PDVHKDSDLS
Sbjct: 61  GSIYGGSIVGGSVPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVRPDVHKDSDLS 120

Query: 121 GPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGY 180
           GPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGY
Sbjct: 121 GPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGY 180

Query: 181 CMLPVVVLSAVSLFLPQTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACF 240
           CMLPVVVLSAVSLFLPQ GI+RFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACF
Sbjct: 181 CMLPVVVLSAVSLFLPQAGIIRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYACF 240

Query: 241 LIFTLFSLLVIF 253
           LIFTLFSLLVIF
Sbjct: 241 LIFTLFSLLVIF 252

[Close]

BLAST of MS019540 vs. TAIR 10
Match: AT2G36300.1 (Integral membrane Yip1 family protein )

HSP 1 Score: 372.9 bits (956), Expect = 2.1e-103
Identity = 196/253 (77.47%), Postives = 219/253 (86.56%), Query Frame = 0


Query: 6   KEFAVPPVVFPSGGN---PNLQQRRVATAPFQPPRSTGSSIPFMSFDIGSAAAASTSSAG 65
           K+FAVPPVVFPSGG+    N+QQRR    PFQPPR + S+IPFMSFDIGSAAA+S + AG
Sbjct: 3   KDFAVPPVVFPSGGSSGGANVQQRRFPATPFQPPRPSSSAIPFMSFDIGSAAASSATPAG 62

Query: 66  IYGGPIGGGSLPGG--ANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDLS 125
            +GG I   S  GG  A+FEDEEPLLDELGIHPDQIWKKT+SILNPFR+   VHKDSDLS
Sbjct: 63  PFGGTIASSSSFGGGSASFEDEEPLLDELGIHPDQIWKKTRSILNPFRINQAVHKDSDLS 122

Query: 126 GPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGY 185
           GPI LY+   LFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTS+VGY
Sbjct: 123 GPIFLYLALCLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSLVGY 182

Query: 186 CMLPVVVLSAVSLFLPQ-TGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAYAC 245
           C+LPVVVLSAVSLF+PQ  G VRF +A +FVLW+TR C++L+VSLADGG+EHRGLIAYAC
Sbjct: 183 CLLPVVVLSAVSLFVPQGAGPVRFVLAALFVLWSTRACSTLVVSLADGGEEHRGLIAYAC 242

Query: 246 FLIFTLFSLLVIF 253
           FLI+TLFSLLVIF
Sbjct: 243 FLIYTLFSLLVIF 255

[Close]

BLAST of MS019540 vs. TAIR 10
Match: AT3G52760.1 (Integral membrane Yip1 family protein )

HSP 1 Score: 342.4 bits (877), Expect = 3.0e-94
Identity = 183/257 (71.21%), Postives = 211/257 (82.10%), Query Frame = 0


Query: 6   KEFAVPPVVFPSGGN----PNLQQRRVATAPFQPPR--STGSSIPFMSFDIGSAAAASTS 65
           K+F +PPVVFP+ G+     N+QQRRV TAP+QPPR  S  SSIPF+ F+IGSAA   + 
Sbjct: 3   KDFPIPPVVFPTSGSSPATANVQQRRVPTAPYQPPRQSSASSSIPFIPFEIGSAAV--SM 62

Query: 66  SAGIYGGPIGGGSLPG---GANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKD 125
            AG + G I   +  G    A+FEDEEPLLDELGIHPDQIWKKT+SILNPFR+   VHKD
Sbjct: 63  PAGPFDGTIASSASFGRGVSASFEDEEPLLDELGIHPDQIWKKTRSILNPFRINQTVHKD 122

Query: 126 SDLSGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTS 185
           SDLSGPI LY+   LFQLLAGKIQFGVILGW+VVSSIFLY+VFNMLAGRNGNLNLHTCTS
Sbjct: 123 SDLSGPIFLYLALCLFQLLAGKIQFGVILGWVVVSSIFLYIVFNMLAGRNGNLNLHTCTS 182

Query: 186 VVGYCMLPVVVLSAVSLFLPQ-TGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLI 245
           +VGY +LPVV+LSAVSLF+PQ  G VRF +   FVLWATR C++L+VSLADGG+EHRGLI
Sbjct: 183 LVGYSLLPVVILSAVSLFVPQGAGPVRFVLGAAFVLWATRACSNLVVSLADGGEEHRGLI 242

Query: 246 AYACFLIFTLFSLLVIF 253
           +YACFLI+TLFSLLVIF
Sbjct: 243 SYACFLIYTLFSLLVIF 257

The following BLAST results are available for this feature:

BLAST of MS019540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144590.1	8.7e-136	100.00	protein YIPF5 homolog isoform X1 [Momordica charantia] >XP_022144591.1 protein Y...	[more]
XP_022983078.1	1.0e-131	96.83	protein YIPF5 homolog isoform X1 [Cucurbita maxima]	[more]
XP_004153735.2	1.0e-131	97.23	protein YIPF5 homolog [Cucumis sativus]	[more]
XP_008442831.1	2.2e-131	96.84	PREDICTED: protein YIPF5 homolog [Cucumis melo]	[more]
XP_022927148.1	2.9e-131	96.83	protein YIPF5 homolog [Cucurbita moschata]	[more]

BLAST of MS019540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54QY3	2.9e-25	36.84	Protein YIPF5 homolog OS=Dictyostelium discoideum OX=44689 GN=yipf5 PE=3 SV=1	[more]
Q66KA5	6.5e-25	34.27	Protein YIPF5 OS=Xenopus tropicalis OX=8364 GN=yipf5 PE=2 SV=1	[more]
Q8N8F6	1.9e-24	35.23	Protein YIPF7 OS=Homo sapiens OX=9606 GN=YIPF7 PE=1 SV=2	[more]
Q7SXS2	2.5e-24	34.27	Protein YIPF5 OS=Xenopus laevis OX=8355 GN=yipf5 PE=2 SV=1	[more]
A5D7K7	1.6e-23	36.72	Protein YIPF7 OS=Bos taurus OX=9913 GN=YIPF7 PE=2 SV=1	[more]

BLAST of MS019540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CU38	4.2e-136	100.00	Protein YIP OS=Momordica charantia OX=3673 GN=LOC111014238 PE=3 SV=1	[more]
A0A6J1J6R1	4.8e-132	96.83	Protein YIP OS=Cucurbita maxima OX=3661 GN=LOC111481733 PE=3 SV=1	[more]
A0A0A0LGM5	4.8e-132	97.23	Protein YIP OS=Cucumis sativus OX=3659 GN=Csa_3G776330 PE=3 SV=1	[more]
A0A1S3B7C5	1.1e-131	96.84	Protein YIP OS=Cucumis melo OX=3656 GN=LOC103486599 PE=3 SV=1	[more]
A0A6J1EK74	1.4e-131	96.83	Protein YIP OS=Cucurbita moschata OX=3662 GN=LOC111434052 PE=3 SV=1	[more]

BLAST of MS019540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36300.1	2.1e-103	77.47	Integral membrane Yip1 family protein	[more]
AT3G52760.1	3.0e-94	71.21	Integral membrane Yip1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006977	Yip1 domain	PFAM	PF04893	Yip1	coord: 127..249 e-value: 9.2E-8 score: 32.2
None	No IPR available	PANTHER	PTHR21236:SF21	PROTEIN YIPF	coord: 6..252
None	No IPR available	PANTHER	PTHR21236	GOLGI MEMBRANE PROTEIN YIP1	coord: 6..252

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019540.1	MS019540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane