MS019530 (gene) Bitter gourd (TR) v1

Overview


Name	MS019530
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	cytochrome b-c1 complex subunit 9-like
Location	scaffold729: 220874 .. 220999 (-)
RNA-Seq Expression	MS019530
Synteny	MS019530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCAGCAGGTCGAAGAAGCGGAGGAGGCCTTCTCGAAGGTCTGTACAGAGTGATTATGCGACGTAATTCTGTTTACGTAACATTCATCATCGCCGGTGCTTTCGTCGGGGAACGGGTAATG

mRNA sequence

ATGAATTCAGCAGGTCGAAGAAGCGGAGGAGGCCTTCTCGAAGGTCTGTACAGAGTGATTATGCGACGTAATTCTGTTTACGTAACATTCATCATCGCCGGTGCTTTCGTCGGGGAACGGGTAATG

Coding sequence (CDS)

ATGAATTCAGCAGGTCGAAGAAGCGGAGGAGGCCTTCTCGAAGGTCTGTACAGAGTGATTATGCGACGTAATTCTGTTTACGTAACATTCATCATCGCCGGTGCTTTCGTCGGGGAACGGGTAATG

Protein sequence

MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERVM

Homology

[Close]

BLAST of MS019530 vs. NCBI nr
Match: XP_022144609.1 (cytochrome b-c1 complex subunit 9-like [Momordica charantia])

HSP 1 Score: 80.9 bits (198), Expect = 2.9e-12
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1  MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERVM 43
          MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGER +
Sbjct: 1  MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAV 42

[Close]

BLAST of MS019530 vs. NCBI nr
Match: KAA0043883.1 (cytochrome b-c1 complex subunit 9-like [Cucumis melo var. makuwa] >TYK25254.1 cytochrome b-c1 complex subunit 9-like [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 8.6e-12
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERVM 43
          MNSAGRRSGGGLLEG YRVIMRRNSVYVTFIIAGAFVGER +
Sbjct: 1  MNSAGRRSGGGLLEGFYRVIMRRNSVYVTFIIAGAFVGERAV 42

[Close]

BLAST of MS019530 vs. NCBI nr
Match: XP_004149208.1 (cytochrome b-c1 complex subunit 9 [Cucumis sativus] >XP_008442838.1 PREDICTED: cytochrome b-c1 complex subunit 9 [Cucumis melo] >KGN59132.1 hypothetical protein Csa_001568 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 8.6e-12
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERVM 43
          MNSAGRRSGGGLLEG YRVIMRRNSVYVTFIIAGAFVGER +
Sbjct: 1  MNSAGRRSGGGLLEGFYRVIMRRNSVYVTFIIAGAFVGERAV 42

[Close]

BLAST of MS019530 vs. NCBI nr
Match: XP_022934205.1 (cytochrome b-c1 complex subunit 9-like [Cucurbita moschata] >XP_022983168.1 cytochrome b-c1 complex subunit 9-like [Cucurbita maxima] >XP_023526376.1 cytochrome b-c1 complex subunit 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.2 bits (191), Expect = 1.9e-11
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERVM 43
          MNSAGRRSGGGL EGLYRVIMRRNSVYVTFIIAGAF+GER +
Sbjct: 1  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAV 42

[Close]

BLAST of MS019530 vs. NCBI nr
Match: KAG7017456.1 (hypothetical protein SDJN02_19321, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 78.2 bits (191), Expect = 1.9e-11
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1   MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERVM 43
           MNSAGRRSGGGL EGLYRVIMRRNSVYVTFIIAGAF+GER +
Sbjct: 73  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAV 114

[Close]

BLAST of MS019530 vs. ExPASy Swiss-Prot
Match: P46270 (Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.9e-10
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 1  MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERVM 43
          M SA RRSGGG+LEG YR++MRR  VYVTF+IAGA +GER +
Sbjct: 1  MESAARRSGGGVLEGFYRLVMRRTPVYVTFVIAGALLGERAV 42

[Close]

BLAST of MS019530 vs. ExPASy Swiss-Prot
Match: Q9LXJ2 (Cytochrome b-c1 complex subunit 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=QCR9 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.6e-08
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 1  MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERVM 43
          M  A RR+  G  EG Y++IMRRNSVYVTFIIAGAF GER +
Sbjct: 1  MEYAARRNQKGAFEGFYKLIMRRNSVYVTFIIAGAFFGERAV 42

[Close]

BLAST of MS019530 vs. ExPASy TrEMBL
Match: A0A6J1CST4 (cytochrome b-c1 complex subunit 9-like OS=Momordica charantia OX=3673 GN=LOC111014251 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1  MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERVM 43
          MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGER +
Sbjct: 1  MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAV 42

[Close]

BLAST of MS019530 vs. ExPASy TrEMBL
Match: A0A5D3DNU0 (Cytochrome b-c1 complex subunit 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003870 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.1e-12
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERVM 43
          MNSAGRRSGGGLLEG YRVIMRRNSVYVTFIIAGAFVGER +
Sbjct: 1  MNSAGRRSGGGLLEGFYRVIMRRNSVYVTFIIAGAFVGERAV 42

[Close]

BLAST of MS019530 vs. ExPASy TrEMBL
Match: A0A0A0LEK7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776920 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.1e-12
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERVM 43
          MNSAGRRSGGGLLEG YRVIMRRNSVYVTFIIAGAFVGER +
Sbjct: 1  MNSAGRRSGGGLLEGFYRVIMRRNSVYVTFIIAGAFVGERAV 42

[Close]

BLAST of MS019530 vs. ExPASy TrEMBL
Match: A0A1S3B664 (cytochrome b-c1 complex subunit 9 OS=Cucumis melo OX=3656 GN=LOC103486605 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.1e-12
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERVM 43
          MNSAGRRSGGGLLEG YRVIMRRNSVYVTFIIAGAFVGER +
Sbjct: 1  MNSAGRRSGGGLLEGFYRVIMRRNSVYVTFIIAGAFVGERAV 42

[Close]

BLAST of MS019530 vs. ExPASy TrEMBL
Match: A0A6J1J703 (cytochrome b-c1 complex subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC111481802 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.2e-12
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERVM 43
          MNSAGRRSGGGL EGLYRVIMRRNSVYVTFIIAGAF+GER +
Sbjct: 1  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAV 42

[Close]

BLAST of MS019530 vs. TAIR 10
Match: AT3G52730.1 (ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein )

HSP 1 Score: 57.4 bits (137), Expect = 3.2e-09
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 1  MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERVM 43
          M  A RR+  G  EG Y++IMRRNSVYVTFIIAGAF GER +
Sbjct: 1  MEYAARRNQKGAFEGFYKLIMRRNSVYVTFIIAGAFFGERAV 42

The following BLAST results are available for this feature:

BLAST of MS019530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144609.1	2.9e-12	95.24	cytochrome b-c1 complex subunit 9-like [Momordica charantia]	[more]
KAA0043883.1	8.6e-12	92.86	cytochrome b-c1 complex subunit 9-like [Cucumis melo var. makuwa] >TYK25254.1 cy...	[more]
XP_004149208.1	8.6e-12	92.86	cytochrome b-c1 complex subunit 9 [Cucumis sativus] >XP_008442838.1 PREDICTED: c...	[more]
XP_022934205.1	1.9e-11	90.48	cytochrome b-c1 complex subunit 9-like [Cucurbita moschata] >XP_022983168.1 cyto...	[more]
KAG7017456.1	1.9e-11	90.48	hypothetical protein SDJN02_19321, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MS019530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46270	4.9e-10	69.05	Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum OX=4113 PE=1 SV=1	[more]
Q9LXJ2	4.6e-08	66.67	Cytochrome b-c1 complex subunit 9, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of MS019530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CST4	1.4e-12	95.24	cytochrome b-c1 complex subunit 9-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A5D3DNU0	4.1e-12	92.86	Cytochrome b-c1 complex subunit 9-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0LEK7	4.1e-12	92.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776920 PE=3 SV=1	[more]
A0A1S3B664	4.1e-12	92.86	cytochrome b-c1 complex subunit 9 OS=Cucumis melo OX=3656 GN=LOC103486605 PE=3 S...	[more]
A0A6J1J703	9.2e-12	90.48	cytochrome b-c1 complex subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC1114818...	[more]

BLAST of MS019530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52730.1	3.2e-09	66.67	ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036656	Cytochrome b-c1 complex subunit 9 superfamily	GENE3D	1.20.5.260		coord: 10..42 e-value: 1.2E-12 score: 49.4
IPR036656	Cytochrome b-c1 complex subunit 9 superfamily	SUPERFAMILY	81514	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 12..41
IPR008027	Cytochrome b-c1 complex subunit 9	PFAM	PF05365	UCR_UQCRX_QCR9	coord: 15..41 e-value: 2.6E-10 score: 40.0
IPR008027	Cytochrome b-c1 complex subunit 9	PANTHER	PTHR12980	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX, SUBUNIT X	coord: 1..41
None	No IPR available	PANTHER	PTHR12980:SF4	CYTOCHROME B-C1 COMPLEX SUBUNIT 9-LIKE	coord: 1..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019530.1	MS019530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
cellular_component	GO:0005750	mitochondrial respiratory chain complex III