MS019521 (gene) Bitter gourd (TR) v1

Overview
NameMS019521
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionABC transporter B family member 29, chloroplastic
Locationscaffold729: 163101 .. 164176 (+)
RNA-Seq ExpressionMS019521
SyntenyMS019521
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGAAAGGTGATGCTATTGATTTAAACCGTTTAAAGGGGGAGGTAAAATTTTGTAACGTCTCATTTGCCTATGGAAGAAATATGCCTCTTGTTTTAGATGGATTGAACCTCCACATCAAAGCAGGAGAAACAGTTGCTTTCATGGGACCTTCTGGAGGGGGAAAGACAACACTTGTTAAATTGCTTCTTCGCCTTTATGACCCGTTATCTGGTAAACTATTTATATCATAGTTATTAGTTCTACTTCTTCAATTTCTGTTTTACAAAAGTTTCCTTTCTTGTTCAAGATTTTTCCTTCATTCTTTTTGTTTTTGTCTCACACATGCCTTAACTTTTTCATGCCATGATGTTGTTCTTTCTCCGAATAGGTGATATACTCGTTGATAACCACAATATCCGGACTGTTAGTTTTAGTAGTTTGCGGAGAAATGTTGGTCTCGTTTGTCAAGACATGGTGAGTGATTGGTGATTACTTGTTCATACATCTTTTGTGATGCAACCAAAAGTTTACTGTATCTCATAGCTGCATAGTCCTTGTTACGTGGTAATAGCATGGGTTACTACTTTGTGAATGGTTATTTTATAAACAAAAATTGACTTCCAATTGGAATGACAGGAATGTTAGTGAAACTTCTTAAAGTTTTAAAGTTCCCCGACTAAAATTTGAATTTAACCAATTTCATTATACTGACCGACCCTGAAGGATCCTGACAGTGCCCTCTCAGGTTGTTGTTGTAACAGTGTACCGACGGTGCCCTTTGTTCAATGCTTGCTTGATTATATTTTAATGCATTCAAGTAATCATTGGTTGCAAAGAAGGAAATACATGGTATAATTGTCAAAGGTTGTCTTGATCAATTATATAGACATTTTGTTTTTGTTCTCAGATCCTTTTCTCTGGAACAGTAGCTGAAAACATAGGATATTATGATCTGACGAAGGAAATTGACATGGAGAGGGTTGAGGAAGTGGCAAAATTTGCAAATGCAGATGAGTTTATCAGAAGGTTACCAAAAGGATACTCTACATATATCGGACCAAGGGGCTTAACGCTGAGTGGAGGACAGAAGCAGAGG

mRNA sequence

GAGAAAGGTGATGCTATTGATTTAAACCGTTTAAAGGGGGAGGTAAAATTTTGTAACGTCTCATTTGCCTATGGAAGAAATATGCCTCTTGTTTTAGATGGATTGAACCTCCACATCAAAGCAGGAGAAACAGTTGCTTTCATGGGACCTTCTGGAGGGGGAAAGACAACACTTGTTAAATTGCTTCTTCGCCTTTATGACCCGTTATCTGGTGATATACTCGTTGATAACCACAATATCCGGACTGTTAGTTTTAGTAGTTTGCGGAGAAATGTTGGTCTCGTTTGTCAAGACATGATCCTTTTCTCTGGAACAGTAGCTGAAAACATAGGATATTATGATCTGACGAAGGAAATTGACATGGAGAGGGTTGAGGAAGTGGCAAAATTTGCAAATGCAGATGAGTTTATCAGAAGGTTACCAAAAGGATACTCTACATATATCGGACCAAGGGGCTTAACGCTGAGTGGAGGACAGAAGCAGAGG

Coding sequence (CDS)

GAGAAAGGTGATGCTATTGATTTAAACCGTTTAAAGGGGGAGGTAAAATTTTGTAACGTCTCATTTGCCTATGGAAGAAATATGCCTCTTGTTTTAGATGGATTGAACCTCCACATCAAAGCAGGAGAAACAGTTGCTTTCATGGGACCTTCTGGAGGGGGAAAGACAACACTTGTTAAATTGCTTCTTCGCCTTTATGACCCGTTATCTGGTGATATACTCGTTGATAACCACAATATCCGGACTGTTAGTTTTAGTAGTTTGCGGAGAAATGTTGGTCTCGTTTGTCAAGACATGATCCTTTTCTCTGGAACAGTAGCTGAAAACATAGGATATTATGATCTGACGAAGGAAATTGACATGGAGAGGGTTGAGGAAGTGGCAAAATTTGCAAATGCAGATGAGTTTATCAGAAGGTTACCAAAAGGATACTCTACATATATCGGACCAAGGGGCTTAACGCTGAGTGGAGGACAGAAGCAGAGG

Protein sequence

EKGDAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVKLLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEIDMERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR
Homology
BLAST of MS019521 vs. NCBI nr
Match: XP_022144800.1 (ABC transporter B family member 29, chloroplastic isoform X3 [Momordica charantia])

HSP 1 Score: 327.0 bits (837), Expect = 9.1e-86
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0

Query: 1   EKGDAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK 60
           EK DAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK
Sbjct: 394 EKRDAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK 453

Query: 61  LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID 120
           LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID
Sbjct: 454 LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID 513

Query: 121 MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
           MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR
Sbjct: 514 MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 555

BLAST of MS019521 vs. NCBI nr
Match: XP_022144798.1 (ABC transporter B family member 29, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 327.0 bits (837), Expect = 9.1e-86
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0

Query: 1   EKGDAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK 60
           EK DAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK
Sbjct: 394 EKRDAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK 453

Query: 61  LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID 120
           LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID
Sbjct: 454 LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID 513

Query: 121 MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
           MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR
Sbjct: 514 MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 555

BLAST of MS019521 vs. NCBI nr
Match: XP_022144797.1 (ABC transporter B family member 29, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 327.0 bits (837), Expect = 9.1e-86
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0

Query: 1   EKGDAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK 60
           EK DAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK
Sbjct: 394 EKRDAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK 453

Query: 61  LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID 120
           LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID
Sbjct: 454 LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID 513

Query: 121 MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
           MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR
Sbjct: 514 MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 555

BLAST of MS019521 vs. NCBI nr
Match: XP_023526541.1 (ABC transporter B family member 29, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 301.6 bits (771), Expect = 4.1e-78
Identity = 148/162 (91.36%), Postives = 152/162 (93.83%), Query Frame = 0

Query: 1   EKGDAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK 60
           E  DA+DLN LKGEVKFCNVSFAYG NMPLVLD LNLHIKAGETVAFMGPSGGGKTTLVK
Sbjct: 396 ETRDAVDLNSLKGEVKFCNVSFAYGSNMPLVLDRLNLHIKAGETVAFMGPSGGGKTTLVK 455

Query: 61  LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID 120
           LLLRLYDPLSGDIL+DNHNIRTV   SLRRNVGLV QDMILFSGTVAENIGYYDLTKEID
Sbjct: 456 LLLRLYDPLSGDILIDNHNIRTVRLKSLRRNVGLVSQDMILFSGTVAENIGYYDLTKEID 515

Query: 121 MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
           MERVEEVA+ ANADEFIRRLPKGY+TYIGPRGLTLSGGQKQR
Sbjct: 516 MERVEEVAQIANADEFIRRLPKGYNTYIGPRGLTLSGGQKQR 557

BLAST of MS019521 vs. NCBI nr
Match: XP_022982879.1 (ABC transporter B family member 29, chloroplastic [Cucurbita maxima])

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 147/158 (93.04%), Postives = 151/158 (95.57%), Query Frame = 0

Query: 5   AIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVKLLLR 64
           A+DLN LKGEVKFCNVSFAYG NMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVKLLLR
Sbjct: 399 AVDLNSLKGEVKFCNVSFAYGSNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVKLLLR 458

Query: 65  LYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEIDMERV 124
           LYDPLSGDIL+DNHNIRTV   SLRRNVGLV QDMILFSGTVAENIGYYDLTKEI+MERV
Sbjct: 459 LYDPLSGDILLDNHNIRTVRLKSLRRNVGLVSQDMILFSGTVAENIGYYDLTKEINMERV 518

Query: 125 EEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
           EEVA+ ANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR
Sbjct: 519 EEVAQIANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 556

BLAST of MS019521 vs. ExPASy Swiss-Prot
Match: Q9LZB8 (ABC transporter B family member 29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ABCB29 PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.9e-57
Identity = 107/162 (66.05%), Postives = 131/162 (80.86%), Query Frame = 0

Query: 1   EKGDAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK 60
           E+ +AI L ++ GEV+ C++SF Y  NM  VLDGLNLHIKAGETVA +GPSGGGKTTL+K
Sbjct: 382 ERPEAIQLEKVAGEVELCDISFKYDENMLPVLDGLNLHIKAGETVALVGPSGGGKTTLIK 441

Query: 61  LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID 120
           LLLRLY+P SG I++D  +I+ +   SLR++VGLV QD  LFSGT+A+NIGY DLT  ID
Sbjct: 442 LLLRLYEPSSGSIIIDKIDIKDIKLESLRKHVGLVSQDTTLFSGTIADNIGYRDLTTGID 501

Query: 121 MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
           M+RVE  AK ANADEFIR LP+GY+T +GPRG +LSGGQKQR
Sbjct: 502 MKRVELAAKTANADEFIRNLPEGYNTGVGPRGSSLSGGQKQR 543

BLAST of MS019521 vs. ExPASy Swiss-Prot
Match: Q9LSJ2 (ABC transporter B family member 22 OS=Arabidopsis thaliana OX=3702 GN=ABCB22 PE=3 SV=2)

HSP 1 Score: 150.6 bits (379), Expect = 1.5e-35
Identity = 75/163 (46.01%), Postives = 104/163 (63.80%), Query Frame = 0

Query: 1    EKGDAIDLNRLKGEVKFCNVSFAY-GRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLV 60
            EK D      +KG++KF NV FAY  R   ++    ++ I  G++ A +GPSG GK+T++
Sbjct: 970  EKPDGFVPQNIKGQIKFVNVDFAYPTRPDVIIFKNFSIDIDEGKSTAIVGPSGSGKSTII 1029

Query: 61   KLLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEI 120
             L+ R YDPL G + +D  +IR+    SLR+++GLV Q+ ILF+GT+ ENI Y   + +I
Sbjct: 1030 GLIERFYDPLKGIVKIDGRDIRSYHLRSLRQHIGLVSQEPILFAGTIRENIMYGGASDKI 1089

Query: 121  DMERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
            D   + E AK ANA +FI  L  GY TY G RG+ LSGGQKQR
Sbjct: 1090 DESEIIEAAKAANAHDFIVTLSDGYDTYCGDRGVQLSGGQKQR 1132

BLAST of MS019521 vs. ExPASy Swiss-Prot
Match: Q2LVL0 (ATP-dependent lipid A-core flippase OS=Syntrophus aciditrophicus (strain SB) OX=56780 GN=msbA PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.4e-35
Identity = 79/162 (48.77%), Postives = 109/162 (67.28%), Query Frame = 0

Query: 1   EKGDAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK 60
           ++ +A++L R+  +++  N+SFAY  + P VL  +NL I+AGE VAF+G SGGGKTTLV 
Sbjct: 338 DRDEAVELPRISEKIEIRNISFAYD-DTP-VLRNINLTIRAGEVVAFVGMSGGGKTTLVN 397

Query: 61  LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID 120
           L+ R YD  +G IL+D H+IR VS  SLRR +G+V Q  ILF+ TV  NI Y   ++   
Sbjct: 398 LIPRFYDVTAGQILIDGHDIRDVSLISLRRQIGIVTQQTILFNDTVRNNIAYG--SQGCS 457

Query: 121 MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
            + + E A+ ANA +FI  LP+GY T IG  G  LSGG++QR
Sbjct: 458 EKEIIEAARAANAHDFIVNLPEGYDTVIGELGTKLSGGERQR 495

BLAST of MS019521 vs. ExPASy Swiss-Prot
Match: Q2YU20 (Putative multidrug export ATP-binding/permease protein SAB1799c OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) OX=273036 GN=SAB1799c PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 5.8e-35
Identity = 81/153 (52.94%), Postives = 99/153 (64.71%), Query Frame = 0

Query: 12  KGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVKLLLRLYDPLSG 71
           +G +   +V+F Y  N   +L  +NL I+ GETVAF+G SGGGK+TL+ L+ R YD  SG
Sbjct: 337 QGRIDIYHVNFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 396

Query: 72  DILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENI--GYYDLTKEIDMERVEEVAK 131
            IL+D HNI+     SLR  +GLV QD ILFS TV ENI  G    T     E V EVAK
Sbjct: 397 QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD----EEVVEVAK 456

Query: 132 FANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
            ANA +FI  LP+GY T +G RG+ LSGGQKQR
Sbjct: 457 VANAHDFIMNLPQGYDTEVGERGVKLSGGQKQR 485

BLAST of MS019521 vs. ExPASy Swiss-Prot
Match: P71082 (Putative multidrug export ATP-binding/permease protein YgaD OS=Bacillus subtilis (strain 168) OX=224308 GN=ygaD PE=3 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 5.8e-35
Identity = 80/164 (48.78%), Postives = 106/164 (64.63%), Query Frame = 0

Query: 1   EKGDAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK 60
           +K +AI  ++++G V+F NVSF Y ++   +L  ++L +  GETVA +G SGGGK+TLV 
Sbjct: 327 DKPNAIKADQIRGGVEFQNVSFQYEKDKENILHDVSLKVNRGETVALVGMSGGGKSTLVS 386

Query: 61  LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAEN--IGYYDLTKE 120
           L+ R YD  SG +L+D  +IR     SLR  VG+V QD  LFS T+ EN  IG  D T  
Sbjct: 387 LIPRFYDVTSGRLLIDGTDIRDYEARSLRNQVGMVLQDTFLFSETIRENIAIGKPDAT-- 446

Query: 121 IDMERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
             +E + E AK ANA EFI   P+GY T +G RG+ LSGGQKQR
Sbjct: 447 --LEEIIEAAKAANAHEFIMSFPEGYETRVGERGVKLSGGQKQR 486

BLAST of MS019521 vs. ExPASy TrEMBL
Match: A0A6J1CU92 (ABC transporter B family member 29, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111014392 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 4.4e-86
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0

Query: 1   EKGDAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK 60
           EK DAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK
Sbjct: 394 EKRDAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK 453

Query: 61  LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID 120
           LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID
Sbjct: 454 LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID 513

Query: 121 MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
           MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR
Sbjct: 514 MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 555

BLAST of MS019521 vs. ExPASy TrEMBL
Match: A0A6J1CSN7 (ABC transporter B family member 29, chloroplastic isoform X3 OS=Momordica charantia OX=3673 GN=LOC111014392 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 4.4e-86
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0

Query: 1   EKGDAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK 60
           EK DAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK
Sbjct: 394 EKRDAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK 453

Query: 61  LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID 120
           LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID
Sbjct: 454 LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID 513

Query: 121 MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
           MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR
Sbjct: 514 MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 555

BLAST of MS019521 vs. ExPASy TrEMBL
Match: A0A6J1CUQ5 (ABC transporter B family member 29, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014392 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 4.4e-86
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0

Query: 1   EKGDAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK 60
           EK DAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK
Sbjct: 394 EKRDAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK 453

Query: 61  LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID 120
           LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID
Sbjct: 454 LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID 513

Query: 121 MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
           MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR
Sbjct: 514 MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 555

BLAST of MS019521 vs. ExPASy TrEMBL
Match: A0A6J1J5R7 (ABC transporter B family member 29, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481595 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.8e-78
Identity = 147/158 (93.04%), Postives = 151/158 (95.57%), Query Frame = 0

Query: 5   AIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVKLLLR 64
           A+DLN LKGEVKFCNVSFAYG NMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVKLLLR
Sbjct: 399 AVDLNSLKGEVKFCNVSFAYGSNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVKLLLR 458

Query: 65  LYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEIDMERV 124
           LYDPLSGDIL+DNHNIRTV   SLRRNVGLV QDMILFSGTVAENIGYYDLTKEI+MERV
Sbjct: 459 LYDPLSGDILLDNHNIRTVRLKSLRRNVGLVSQDMILFSGTVAENIGYYDLTKEINMERV 518

Query: 125 EEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
           EEVA+ ANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR
Sbjct: 519 EEVAQIANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 556

BLAST of MS019521 vs. ExPASy TrEMBL
Match: A0A6J1F6Q8 (ABC transporter B family member 29, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441379 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 9.8e-78
Identity = 147/162 (90.74%), Postives = 152/162 (93.83%), Query Frame = 0

Query: 1   EKGDAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK 60
           E  DA+DLN LKGEVKFCNVSFAYG NMPLVLD LNLHI+AGETVAFMGPSGGGKTTLVK
Sbjct: 395 ETRDAVDLNSLKGEVKFCNVSFAYGSNMPLVLDRLNLHIEAGETVAFMGPSGGGKTTLVK 454

Query: 61  LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID 120
           LLLRLYDPLSGDIL+DNHNIRTV   SLRRNVGLV QDMILFSGTVAENIGYYDLTKEID
Sbjct: 455 LLLRLYDPLSGDILLDNHNIRTVRLKSLRRNVGLVSQDMILFSGTVAENIGYYDLTKEID 514

Query: 121 MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
           MERVEEVA+ ANADEFIRRLPKGY+TYIGPRGLTLSGGQKQR
Sbjct: 515 MERVEEVAQIANADEFIRRLPKGYNTYIGPRGLTLSGGQKQR 556

BLAST of MS019521 vs. TAIR 10
Match: AT5G03910.1 (ABC2 homolog 12 )

HSP 1 Score: 223.4 bits (568), Expect = 1.3e-58
Identity = 107/162 (66.05%), Postives = 131/162 (80.86%), Query Frame = 0

Query: 1   EKGDAIDLNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVK 60
           E+ +AI L ++ GEV+ C++SF Y  NM  VLDGLNLHIKAGETVA +GPSGGGKTTL+K
Sbjct: 382 ERPEAIQLEKVAGEVELCDISFKYDENMLPVLDGLNLHIKAGETVALVGPSGGGKTTLIK 441

Query: 61  LLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEID 120
           LLLRLY+P SG I++D  +I+ +   SLR++VGLV QD  LFSGT+A+NIGY DLT  ID
Sbjct: 442 LLLRLYEPSSGSIIIDKIDIKDIKLESLRKHVGLVSQDTTLFSGTIADNIGYRDLTTGID 501

Query: 121 MERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
           M+RVE  AK ANADEFIR LP+GY+T +GPRG +LSGGQKQR
Sbjct: 502 MKRVELAAKTANADEFIRNLPEGYNTGVGPRGSSLSGGQKQR 543

BLAST of MS019521 vs. TAIR 10
Match: AT3G28415.1 (ABC transporter family protein )

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-36
Identity = 75/163 (46.01%), Postives = 104/163 (63.80%), Query Frame = 0

Query: 1    EKGDAIDLNRLKGEVKFCNVSFAY-GRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLV 60
            EK D      +KG++KF NV FAY  R   ++    ++ I  G++ A +GPSG GK+T++
Sbjct: 962  EKPDGFVPQNIKGQIKFVNVDFAYPTRPDVIIFKNFSIDIDEGKSTAIVGPSGSGKSTII 1021

Query: 61   KLLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEI 120
             L+ R YDPL G + +D  +IR+    SLR+++GLV Q+ ILF+GT+ ENI Y   + +I
Sbjct: 1022 GLIERFYDPLKGIVKIDGRDIRSYHLRSLRQHIGLVSQEPILFAGTIRENIMYGGASDKI 1081

Query: 121  DMERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
            D   + E AK ANA +FI  L  GY TY G RG+ LSGGQKQR
Sbjct: 1082 DESEIIEAAKAANAHDFIVTLSDGYDTYCGDRGVQLSGGQKQR 1124

BLAST of MS019521 vs. TAIR 10
Match: AT3G28345.1 (ABC transporter family protein )

HSP 1 Score: 145.6 bits (366), Expect = 3.5e-35
Identity = 71/163 (43.56%), Postives = 105/163 (64.42%), Query Frame = 0

Query: 1    EKGDAIDLNRLKGEVKFCNVSFAY-GRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLV 60
            E  D  +  R+ G+V+F +V F+Y  R   ++    ++ I+ G++ A +GPSG GK+T++
Sbjct: 981  EDPDGYETERITGQVEFLDVDFSYPTRPDVIIFKNFSIKIEEGKSTAIVGPSGSGKSTII 1040

Query: 61   KLLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEI 120
             L+ R YDPL G + +D  +IR+    SLRR++ LV Q+  LF+GT+ ENI Y  ++ +I
Sbjct: 1041 GLIERFYDPLKGIVKIDGRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIIYGGVSDKI 1100

Query: 121  DMERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
            D   + E AK ANA +FI  L +GY TY G RG+ LSGGQKQR
Sbjct: 1101 DEAEIIEAAKAANAHDFITSLTEGYDTYCGDRGVQLSGGQKQR 1143

BLAST of MS019521 vs. TAIR 10
Match: AT1G28010.1 (P-glycoprotein 14 )

HSP 1 Score: 144.4 bits (363), Expect = 7.8e-35
Identity = 72/156 (46.15%), Postives = 105/156 (67.31%), Query Frame = 0

Query: 8   LNRLKGEVKFCNVSFAYGRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLVKLLLRLYD 67
           L  + G+++FC VSFAY     +V + L+  I +G+T AF+GPSG GK+T++ ++ R Y+
Sbjct: 366 LQNVVGKIEFCGVSFAYPSRPNMVFENLSFTIHSGKTFAFVGPSGSGKSTIISMVQRFYE 425

Query: 68  PLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKE-IDMERVEE 127
           P SG+IL+D ++I+ +    LR  +GLV Q+  LF+ T+A NI    L KE  +M+++ E
Sbjct: 426 PRSGEILLDGNDIKNLKLKWLREQMGLVSQEPALFATTIASNI---LLGKEKANMDQIIE 485

Query: 128 VAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
            AK ANAD FI+ LP GY+T +G  G  LSGGQKQR
Sbjct: 486 AAKAANADSFIKSLPNGYNTQVGEGGTQLSGGQKQR 518

BLAST of MS019521 vs. TAIR 10
Match: AT3G28360.1 (P-glycoprotein 16 )

HSP 1 Score: 142.5 bits (358), Expect = 3.0e-34
Identity = 71/163 (43.56%), Postives = 101/163 (61.96%), Query Frame = 0

Query: 1    EKGDAIDLNRLKGEVKFCNVSFAY-GRNMPLVLDGLNLHIKAGETVAFMGPSGGGKTTLV 60
            E  D   L ++KG++ F NV FAY  R   ++ +  ++ I  G++ A +GPS  GK+T++
Sbjct: 967  ENPDGYILEKIKGQITFLNVDFAYPTRPNMVIFNNFSIEIHEGKSTAIVGPSRSGKSTVI 1026

Query: 61   KLLLRLYDPLSGDILVDNHNIRTVSFSSLRRNVGLVCQDMILFSGTVAENIGYYDLTKEI 120
             L+ R YDPL G + +D  +IR+    SLR+++ LV Q+  LF+GT+ ENI Y   + +I
Sbjct: 1027 GLIERFYDPLQGIVKIDGRDIRSYHLRSLRQHMSLVSQEPTLFAGTIRENIMYGRASNKI 1086

Query: 121  DMERVEEVAKFANADEFIRRLPKGYSTYIGPRGLTLSGGQKQR 163
            D   + E  K ANA EFI  L  GY TY G RG+ LSGGQKQR
Sbjct: 1087 DESEIIEAGKTANAHEFITSLSDGYDTYCGDRGVQLSGGQKQR 1129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022144800.19.1e-8699.38ABC transporter B family member 29, chloroplastic isoform X3 [Momordica charanti... [more]
XP_022144798.19.1e-8699.38ABC transporter B family member 29, chloroplastic isoform X2 [Momordica charanti... [more]
XP_022144797.19.1e-8699.38ABC transporter B family member 29, chloroplastic isoform X1 [Momordica charanti... [more]
XP_023526541.14.1e-7891.36ABC transporter B family member 29, chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_022982879.11.2e-7793.04ABC transporter B family member 29, chloroplastic [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q9LZB81.9e-5766.05ABC transporter B family member 29, chloroplastic OS=Arabidopsis thaliana OX=370... [more]
Q9LSJ21.5e-3546.01ABC transporter B family member 22 OS=Arabidopsis thaliana OX=3702 GN=ABCB22 PE=... [more]
Q2LVL04.4e-3548.77ATP-dependent lipid A-core flippase OS=Syntrophus aciditrophicus (strain SB) OX=... [more]
Q2YU205.8e-3552.94Putative multidrug export ATP-binding/permease protein SAB1799c OS=Staphylococcu... [more]
P710825.8e-3548.78Putative multidrug export ATP-binding/permease protein YgaD OS=Bacillus subtilis... [more]
Match NameE-valueIdentityDescription
A0A6J1CU924.4e-8699.38ABC transporter B family member 29, chloroplastic isoform X2 OS=Momordica charan... [more]
A0A6J1CSN74.4e-8699.38ABC transporter B family member 29, chloroplastic isoform X3 OS=Momordica charan... [more]
A0A6J1CUQ54.4e-8699.38ABC transporter B family member 29, chloroplastic isoform X1 OS=Momordica charan... [more]
A0A6J1J5R75.8e-7893.04ABC transporter B family member 29, chloroplastic OS=Cucurbita maxima OX=3661 GN... [more]
A0A6J1F6Q89.8e-7890.74ABC transporter B family member 29, chloroplastic OS=Cucurbita moschata OX=3662 ... [more]
Match NameE-valueIdentityDescription
AT5G03910.11.3e-5866.05ABC2 homolog 12 [more]
AT3G28415.11.1e-3646.01ABC transporter family protein [more]
AT3G28345.13.5e-3543.56ABC transporter family protein [more]
AT1G28010.17.8e-3546.15P-glycoprotein 14 [more]
AT3G28360.13.0e-3443.56P-glycoprotein 16 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003439ABC transporter-like, ATP-binding domainPFAMPF00005ABC_trancoord: 32..162
e-value: 2.2E-22
score: 80.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 5..162
e-value: 1.8E-50
score: 173.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 4..162
NoneNo IPR availablePANTHERPTHR24221:SF112ABC TRANSPORTER B FAMILY MEMBER 29, CHLOROPLASTICcoord: 1..162
IPR039421Type 1 protein exporterPANTHERPTHR24221ATP-BINDING CASSETTE SUB-FAMILY Bcoord: 1..162

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS019521.1MS019521.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding