MS019520 (gene) Bitter gourd (TR) v1

Overview


Name	MS019520
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold729: 159120 .. 159967 (+)
RNA-Seq Expression	MS019520
Synteny	MS019520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGCCCAGGCGGAGATGGCGGAGTTTCTGATGCTGCAGGTTCACCGTTTCCGGCTGCGGACGTCGACAGAGAATTAAACCCCGGCCATAACAGGCACGTTGAAGTCGATCCTGTTTCCTCTGAAGTTGCTGTATCTTTGGAAAAAAAGGTATATTAAATCTTTTCTCCGGATCAAATTACTACTCACCCCTTCAACTTTTAGGTTATTTCCATTTAGTCCTTATAAATTCTTTACATTTCAAGATCGGGTTATTCTAGTCGTTGTACTTTAAAATTTTCTAATAAATTCATAAATATTTTATGGTCCGTTGACTATATTACGCATTTAGATTCATTAAACACAAAATTGATAATTCTTATTTTGTGTATAACATGTAGGAGTAAAGATTCGAACTCTTAAACTTAGGATTAGATACACGTCATTCAACCCATTGATTTATAGAGAGTAAATAGAAGCAATTCAATATTTTATGTGGCATGATGAATATATAATTTAAAACATACGACTGATGTTAGTAGAAATAACTAAGTATCGCTTGATGACCATTTCGTTTTTAGTTTTCTATTTTAGAATCAGACCTGTTTTTTACAATTTCATTAGTATTTTTCTATATTTGAATTATTTGCCAAATTTCAAAAACAAAATTAGATTTTCGCAAACTAATGAAGGTGTTTGTGAGTAATTTTTAGGAGCAGGCGAAGAGGAAAGCGGTGGAAGAAGAACGAAAGGAAGCAAAGAAGAACGATACGATGAAGACATTGAAGACAACGTTCATCGTCTCCGGCGTGATCGCGGCGGTGGCAGTGGCGGCCTTCGCCATTGTTAAGAAATTACGGGAGAAT

mRNA sequence

ATGGCGAGCCCAGGCGGAGATGGCGGAGTTTCTGATGCTGCAGGTTCACCGTTTCCGGCTGCGGACGTCGACAGAGAATTAAACCCCGGCCATAACAGGCACGTTGAAGTCGATCCTGTTTCCTCTGAAGTTGCTGTATCTTTGGAAAAAAAGGAGCAGGCGAAGAGGAAAGCGGTGGAAGAAGAACGAAAGGAAGCAAAGAAGAACGATACGATGAAGACATTGAAGACAACGTTCATCGTCTCCGGCGTGATCGCGGCGGTGGCAGTGGCGGCCTTCGCCATTGTTAAGAAATTACGGGAGAAT

Coding sequence (CDS)

ATGGCGAGCCCAGGCGGAGATGGCGGAGTTTCTGATGCTGCAGGTTCACCGTTTCCGGCTGCGGACGTCGACAGAGAATTAAACCCCGGCCATAACAGGCACGTTGAAGTCGATCCTGTTTCCTCTGAAGTTGCTGTATCTTTGGAAAAAAAGGAGCAGGCGAAGAGGAAAGCGGTGGAAGAAGAACGAAAGGAAGCAAAGAAGAACGATACGATGAAGACATTGAAGACAACGTTCATCGTCTCCGGCGTGATCGCGGCGGTGGCAGTGGCGGCCTTCGCCATTGTTAAGAAATTACGGGAGAAT

Protein sequence

MASPGGDGGVSDAAGSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKAVEEERKEAKKNDTMKTLKTTFIVSGVIAAVAVAAFAIVKKLREN

Homology

[Close]

BLAST of MS019520 vs. NCBI nr
Match: XP_022144747.1 (uncharacterized protein LOC111014362 [Momordica charantia])

HSP 1 Score: 186.0 bits (471), Expect = 1.6e-43
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MASPGGDGGVSDAAGSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKAVE 60
           MASPGGDGGVSDAAGSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKAVE
Sbjct: 1   MASPGGDGGVSDAAGSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKAVE 60

Query: 61  EERKEAKKNDTMKTLKTTFIVSGVIAAVAVAAFAIVKKLREN 103
           EERKEAKKNDTMKTLKTTFIVSGVIAAVAVAAFAIVKKLREN
Sbjct: 61  EERKEAKKNDTMKTLKTTFIVSGVIAAVAVAAFAIVKKLREN 102

[Close]

BLAST of MS019520 vs. NCBI nr
Match: XP_023005785.1 (uncharacterized protein LOC111498680 [Cucurbita maxima])

HSP 1 Score: 146.0 bits (367), Expect = 1.8e-31
Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MASPGGDGGVSDAAGSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKA-V 60
           MASPG DGG +  AGS FPA DVDREL+PGHN+HV VDP+SS+VA S+E KEQAKRKA V
Sbjct: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60

Query: 61  EEERKEAKKNDTMKTLKTTFIVSGVIAAVAVAAFAIVKKLREN 103
           EEERK+AKK DTM+TLKTTFIVSGVIAAVAVAAF +VKKLR+N
Sbjct: 61  EEERKQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 103

[Close]

BLAST of MS019520 vs. NCBI nr
Match: XP_022947065.1 (uncharacterized protein LOC111451047 [Cucurbita moschata])

HSP 1 Score: 145.6 bits (366), Expect = 2.4e-31
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MASPGGDGGVSDAAGSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKA-V 60
           MASPG DGG +  AGS FPA DVDREL+PGHN+HV VDP+SS+VA S+E KEQAKRKA V
Sbjct: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60

Query: 61  EEERKEAKKNDTMKTLKTTFIVSGVIAAVAVAAFAIVKKLREN 103
           EEERK+AKK DTM+TLKTTFIVSGV+AAVAVAAF +VKKLR+N
Sbjct: 61  EEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN 103

[Close]

BLAST of MS019520 vs. NCBI nr
Match: KAG6596576.1 (Rho GTPase-activating protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-28
Identity = 76/99 (76.77%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 5   GGDGGVSDAAGSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKA-VEEER 64
           G DGG +  AGS FPA DVDREL+PGHN+HV VDP+SS+VA S+E KEQAKRKA VEEER
Sbjct: 471 GRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEER 530

Query: 65  KEAKKNDTMKTLKTTFIVSGVIAAVAVAAFAIVKKLREN 103
           ++AKK DTM+TLKTTFIVSGVIAAVAVAAF +VKKLR+N
Sbjct: 531 EQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 569

[Close]

BLAST of MS019520 vs. NCBI nr
Match: XP_023539528.1 (uncharacterized protein LOC111800168 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.6 bits (327), Expect = 7.9e-27
Identity = 71/89 (79.78%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 15  GSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKA-VEEERKEAKKNDTMK 74
           GS FPA DVDREL+PGHN+HV VDP+SS+VA S+E KEQAKRKA VEEERK+AKK DTM+
Sbjct: 3   GSRFPAVDVDRELHPGHNQHVAVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQ 62

Query: 75  TLKTTFIVSGVIAAVAVAAFAIVKKLREN 103
           TLKTTFIVSGV+AAVAVAAF +VKKLR+N
Sbjct: 63  TLKTTFIVSGVVAAVAVAAFVVVKKLRQN 91

[Close]

BLAST of MS019520 vs. ExPASy TrEMBL
Match: A0A6J1CUK2 (uncharacterized protein LOC111014362 OS=Momordica charantia OX=3673 GN=LOC111014362 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 7.6e-44
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MASPGGDGGVSDAAGSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKAVE 60
           MASPGGDGGVSDAAGSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKAVE
Sbjct: 1   MASPGGDGGVSDAAGSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKAVE 60

Query: 61  EERKEAKKNDTMKTLKTTFIVSGVIAAVAVAAFAIVKKLREN 103
           EERKEAKKNDTMKTLKTTFIVSGVIAAVAVAAFAIVKKLREN
Sbjct: 61  EERKEAKKNDTMKTLKTTFIVSGVIAAVAVAAFAIVKKLREN 102

[Close]

BLAST of MS019520 vs. ExPASy TrEMBL
Match: A0A6J1KYC8 (uncharacterized protein LOC111498680 OS=Cucurbita maxima OX=3661 GN=LOC111498680 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 8.7e-32
Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MASPGGDGGVSDAAGSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKA-V 60
           MASPG DGG +  AGS FPA DVDREL+PGHN+HV VDP+SS+VA S+E KEQAKRKA V
Sbjct: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60

Query: 61  EEERKEAKKNDTMKTLKTTFIVSGVIAAVAVAAFAIVKKLREN 103
           EEERK+AKK DTM+TLKTTFIVSGVIAAVAVAAF +VKKLR+N
Sbjct: 61  EEERKQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 103

[Close]

BLAST of MS019520 vs. ExPASy TrEMBL
Match: A0A6J1G5S8 (uncharacterized protein LOC111451047 OS=Cucurbita moschata OX=3662 GN=LOC111451047 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MASPGGDGGVSDAAGSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKA-V 60
           MASPG DGG +  AGS FPA DVDREL+PGHN+HV VDP+SS+VA S+E KEQAKRKA V
Sbjct: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60

Query: 61  EEERKEAKKNDTMKTLKTTFIVSGVIAAVAVAAFAIVKKLREN 103
           EEERK+AKK DTM+TLKTTFIVSGV+AAVAVAAF +VKKLR+N
Sbjct: 61  EEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN 103

[Close]

BLAST of MS019520 vs. ExPASy TrEMBL
Match: A0A6J1J505 (uncharacterized protein LOC111481798 OS=Cucurbita maxima OX=3661 GN=LOC111481798 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.2e-25
Identity = 72/102 (70.59%), Postives = 80/102 (78.43%), Query Frame = 0


Query: 1   MASPGGDGGVSDAAGSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKAVE 60
           MAS   DGGV++AAGS FP  D +RELNPGHN+ V+VDP+SSE A SL  KEQ KRKA E
Sbjct: 1   MASSDRDGGVTNAAGSRFPGVDGERELNPGHNKQVDVDPISSEAAASLVIKEQEKRKAAE 60

Query: 61  EERKEAKKNDTMKTLKTTFIVSGVIAAVAVAAFAIVKKLREN 103
           EER  AKK + M+TLK  FIVS VIAAVAV AFAIVKKLREN
Sbjct: 61  EERNRAKKKEAMQTLKMPFIVSSVIAAVAVVAFAIVKKLREN 102

[Close]

BLAST of MS019520 vs. ExPASy TrEMBL
Match: A0A0A0LBF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777020 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.0e-24
Identity = 69/89 (77.53%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 15  GSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKAVEEERKEA-KKNDTMK 74
           G  FPA DV+RELNPG N+HVEVDPVSS+VA SLE KE  KRKA E+ERK A KK + M+
Sbjct: 8   GEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAKKKKEAMQ 67

Query: 75  TLKTTFIVSGVIAAVAVAAFAIVKKLREN 103
           TLKTTFIVSG+IAAVAVAAFAIVKKLREN
Sbjct: 68  TLKTTFIVSGIIAAVAVAAFAIVKKLREN 96

[Close]

BLAST of MS019520 vs. TAIR 10
Match: AT3G52620.1 (unknown protein; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 8.1e-14
Identity = 45/85 (52.94%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 18  FPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKAVEEERKEAKKNDTMKTLKT 77
           FP  D + ELNPG N++ EVDPVSSE+A       +  +K VE+      K D  +TLK 
Sbjct: 8   FPEGDAEAELNPGQNKNFEVDPVSSEIA------SEKVQKIVEKRENAKAKRDGARTLKN 67

Query: 78  TFIVSGVIAAVAVAAFAIVKKLREN 103
           T IVS VI AVA AAFAI KKL+EN
Sbjct: 68  TIIVSAVIVAVAGAAFAITKKLKEN 86

The following BLAST results are available for this feature:

BLAST of MS019520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144747.1	1.6e-43	100.00	uncharacterized protein LOC111014362 [Momordica charantia]	[more]
XP_023005785.1	1.8e-31	78.64	uncharacterized protein LOC111498680 [Cucurbita maxima]	[more]
XP_022947065.1	2.4e-31	77.67	uncharacterized protein LOC111451047 [Cucurbita moschata]	[more]
KAG6596576.1	1.1e-28	76.77	Rho GTPase-activating protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023539528.1	7.9e-27	79.78	uncharacterized protein LOC111800168 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS019520 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS019520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CUK2	7.6e-44	100.00	uncharacterized protein LOC111014362 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1KYC8	8.7e-32	78.64	uncharacterized protein LOC111498680 OS=Cucurbita maxima OX=3661 GN=LOC111498680...	[more]
A0A6J1G5S8	1.1e-31	77.67	uncharacterized protein LOC111451047 OS=Cucurbita moschata OX=3662 GN=LOC1114510...	[more]
A0A6J1J505	1.2e-25	70.59	uncharacterized protein LOC111481798 OS=Cucurbita maxima OX=3661 GN=LOC111481798...	[more]
A0A0A0LBF7	1.0e-24	77.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777020 PE=4 SV=1	[more]

BLAST of MS019520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52620.1	8.1e-14	52.94	unknown protein; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 44..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69
None	No IPR available	PANTHER	PTHR37741	TRANSMEMBRANE PROTEIN	coord: 2..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019520.1	MS019520.1	mRNA