MS019501 (gene) Bitter gourd (TR) v1

Overview


Name	MS019501
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Inhibitor cystine knot peptide MCh-1
Location	scaffold729: 28949 .. 29257 (+)
RNA-Seq Expression	MS019501
Synteny	MS019501

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGTAAGAAGATGGCGGCGATGATGATGGTGTTGGTGGCGCTGGTGTTTATCAGTTGTTCCGCCCGATCGGCGTTGGCCATCGTTGAAAATGAAAATACGATGGTGATCCAGCTTGTCCCGGACAACACAAATAATGAAGGTGTGAAGTACTTGAAGATCAATTCAAATGGTGGATGGAGAAAAATGCTGAAACACAATTCGGCGCTTGGATGCGCTGGAAAGTCATGCAACATCCTTGGCTCTGACCCTTGCGATGCTGGCTGCTTTTGCCTTCCAGTTGGTATTGTTGCAGGAGTATGTGTT

mRNA sequence

ATGGCGGGTAAGAAGATGGCGGCGATGATGATGGTGTTGGTGGCGCTGGTGTTTATCAGTTGTTCCGCCCGATCGGCGTTGGCCATCGTTGAAAATGAAAATACGATGGTGATCCAGCTTGTCCCGGACAACACAAATAATGAAGGTGTGAAGTACTTGAAGATCAATTCAAATGGTGGATGGAGAAAAATGCTGAAACACAATTCGGCGCTTGGATGCGCTGGAAAGTCATGCAACATCCTTGGCTCTGACCCTTGCGATGCTGGCTGCTTTTGCCTTCCAGTTGGTATTGTTGCAGGAGTATGTGTT

Coding sequence (CDS)

ATGGCGGGTAAGAAGATGGCGGCGATGATGATGGTGTTGGTGGCGCTGGTGTTTATCAGTTGTTCCGCCCGATCGGCGTTGGCCATCGTTGAAAATGAAAATACGATGGTGATCCAGCTTGTCCCGGACAACACAAATAATGAAGGTGTGAAGTACTTGAAGATCAATTCAAATGGTGGATGGAGAAAAATGCTGAAACACAATTCGGCGCTTGGATGCGCTGGAAAGTCATGCAACATCCTTGGCTCTGACCCTTGCGATGCTGGCTGCTTTTGCCTTCCAGTTGGTATTGTTGCAGGAGTATGTGTT

Protein sequence

MAGKKMAAMMMVLVALVFISCSARSALAIVENENTMVIQLVPDNTNNEGVKYLKINSNGGWRKMLKHNSALGCAGKSCNILGSDPCDAGCFCLPVGIVAGVCV

Homology

[Close]

BLAST of MS019501 vs. NCBI nr
Match: 2M2Q_A (Solution structure of MCh-1: A novel inhibitor cystine knot peptide from Momordica charantia [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 72  GCAGKSCNILGSDPCDAGCFCLPVGIVAGVCV 104
           GCAGKSCNILGSDPCDAGCFCLPVGIVAGVCV
Sbjct: 1   GCAGKSCNILGSDPCDAGCFCLPVGIVAGVCV 32

[Close]

BLAST of MS019501 vs. ExPASy TrEMBL
Match: V5IRT8 (Inhibitor cystine knot peptide MCh-1 OS=Momordica charantia OX=3673 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.5e-10
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 72  GCAGKSCNILGSDPCDAGCFCLPVGIVAGVCV 104
           GCAGKSCNILGSDPCDAGCFCLPVGIVAGVCV
Sbjct: 1   GCAGKSCNILGSDPCDAGCFCLPVGIVAGVCV 32

The following BLAST results are available for this feature:

BLAST of MS019501 vs. NCBI nr


Match Name	E-value	Identity	Description
2M2Q_A	2.0e-09	100.00	Solution structure of MCh-1: A novel inhibitor cystine knot peptide from Momordi...	[more]

BLAST of MS019501 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS019501 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
V5IRT8	9.5e-10	100.00	Inhibitor cystine knot peptide MCh-1 OS=Momordica charantia OX=3673 PE=1 SV=1	[more]

BLAST of MS019501 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..21 score: 6.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019501.1	MS019501.1	mRNA