MS019456 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACGGGCATTTGAACAAGATCGCCACCGCACTCATCGCCGTCTTTTCGCTCACTTTCCTCGCTCTCCTCGCCCAGATCCTCTACGTTCTCCGCCACCGCAGCCGCCGTGATTCCGATTCTGTAGCTGTGTTGAAAGTGAAGGAATGCGGGTTCCGTTTCTGCTGGAGGAACCAATCGCGGATCGAACCCAAAGAGATCGCGTGTGTGGTCCACGATTATTCGGAGGCCGAGGCGGTGGACGAGGTCGAGAAGTGGCGGCAGCTGTGCGGACCCTCCAGAGTTCTGTTCACTATCAACGAAGCGGCCGAAGAAGAGGAGAGAGAAGGAATCGAATCTTCCGAGCCGCGTTTTCCAGATCCCGATACGACACCGTTTCACACCCCCTGCGCTTCTCCTCCCTACTACACGCCCTCGCCTTCGCCCACGCGCCGCACCGCCGATTTCCCGGCGGACGATACTTCTCCCTCCGGTCACAACCGAACGGCACCGTTTTTCGCTATAGAAATTCGCACTCAC ATGGACGGGCATTTGAACAAGATCGCCACCGCACTCATCGCCGTCTTTTCGCTCACTTTCCTCGCTCTCCTCGCCCAGATCCTCTACGTTCTCCGCCACCGCAGCCGCCGTGATTCCGATTCTGTAGCTGTGTTGAAAGTGAAGGAATGCGGGTTCCGTTTCTGCTGGAGGAACCAATCGCGGATCGAACCCAAAGAGATCGCGTGTGTGGTCCACGATTATTCGGAGGCCGAGGCGGTGGACGAGGTCGAGAAGTGGCGGCAGCTGTGCGGACCCTCCAGAGTTCTGTTCACTATCAACGAAGCGGCCGAAGAAGAGGAGAGAGAAGGAATCGAATCTTCCGAGCCGCGTTTTCCAGATCCCGATACGACACCGTTTCACACCCCCTGCGCTTCTCCTCCCTACTACACGCCCTCGCCTTCGCCCACGCGCCGCACCGCCGATTTCCCGGCGGACGATACTTCTCCCTCCGGTCACAACCGAACGGCACCGTTTTTCGCTATAGAAATTCGCACTCAC ATGGACGGGCATTTGAACAAGATCGCCACCGCACTCATCGCCGTCTTTTCGCTCACTTTCCTCGCTCTCCTCGCCCAGATCCTCTACGTTCTCCGCCACCGCAGCCGCCGTGATTCCGATTCTGTAGCTGTGTTGAAAGTGAAGGAATGCGGGTTCCGTTTCTGCTGGAGGAACCAATCGCGGATCGAACCCAAAGAGATCGCGTGTGTGGTCCACGATTATTCGGAGGCCGAGGCGGTGGACGAGGTCGAGAAGTGGCGGCAGCTGTGCGGACCCTCCAGAGTTCTGTTCACTATCAACGAAGCGGCCGAAGAAGAGGAGAGAGAAGGAATCGAATCTTCCGAGCCGCGTTTTCCAGATCCCGATACGACACCGTTTCACACCCCCTGCGCTTCTCCTCCCTACTACACGCCCTCGCCTTCGCCCACGCGCCGCACCGCCGATTTCCCGGCGGACGATACTTCTCCCTCCGGTCACAACCGAACGGCACCGTTTTTCGCTATAGAAATTCGCACTCAC MDGHLNKIATALIAVFSLTFLALLAQILYVLRHRSRRDSDSVAVLKVKECGFRFCWRNQSRIEPKEIACVVHDYSEAEAVDEVEKWRQLCGPSRVLFTINEAAEEEEREGIESSEPRFPDPDTTPFHTPCASPPYYTPSPSPTRRTADFPADDTSPSGHNRTAPFFAIEIRTH Homology
BLAST of MS019456 vs. NCBI nr
Match: XP_023005969.1 (uncharacterized protein LOC111498829 [Cucurbita maxima]) HSP 1 Score: 163.7 bits (413), Expect = 1.4e-36 Identity = 105/179 (58.66%), Postives = 121/179 (67.60%), Query Frame = 0
BLAST of MS019456 vs. NCBI nr
Match: XP_038905411.1 (uncharacterized protein LOC120091450 [Benincasa hispida]) HSP 1 Score: 159.1 bits (401), Expect = 3.5e-35 Identity = 104/190 (54.74%), Postives = 120/190 (63.16%), Query Frame = 0
BLAST of MS019456 vs. NCBI nr
Match: XP_023528874.1 (uncharacterized protein LOC111791670 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 157.9 bits (398), Expect = 7.8e-35 Identity = 99/176 (56.25%), Postives = 112/176 (63.64%), Query Frame = 0
BLAST of MS019456 vs. NCBI nr
Match: XP_022935266.1 (uncharacterized protein LOC111442204 [Cucurbita moschata]) HSP 1 Score: 156.4 bits (394), Expect = 2.3e-34 Identity = 99/179 (55.31%), Postives = 113/179 (63.13%), Query Frame = 0
BLAST of MS019456 vs. NCBI nr
Match: XP_022983133.1 (uncharacterized protein LOC111481774 [Cucurbita maxima]) HSP 1 Score: 156.4 bits (394), Expect = 2.3e-34 Identity = 98/176 (55.68%), Postives = 112/176 (63.64%), Query Frame = 0
BLAST of MS019456 vs. ExPASy TrEMBL
Match: A0A6J1L0U5 (uncharacterized protein LOC111498829 OS=Cucurbita maxima OX=3661 GN=LOC111498829 PE=4 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 6.9e-37 Identity = 105/179 (58.66%), Postives = 121/179 (67.60%), Query Frame = 0
BLAST of MS019456 vs. ExPASy TrEMBL
Match: A0A6J1J6W6 (uncharacterized protein LOC111481774 OS=Cucurbita maxima OX=3661 GN=LOC111481774 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 1.1e-34 Identity = 98/176 (55.68%), Postives = 112/176 (63.64%), Query Frame = 0
BLAST of MS019456 vs. ExPASy TrEMBL
Match: A0A6J1F429 (uncharacterized protein LOC111442204 OS=Cucurbita moschata OX=3662 GN=LOC111442204 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 1.1e-34 Identity = 99/179 (55.31%), Postives = 113/179 (63.13%), Query Frame = 0
BLAST of MS019456 vs. ExPASy TrEMBL
Match: A0A6J1FQJ7 (uncharacterized protein LOC111447877 OS=Cucurbita moschata OX=3662 GN=LOC111447877 PE=4 SV=1) HSP 1 Score: 152.1 bits (383), Expect = 2.1e-33 Identity = 101/178 (56.74%), Postives = 114/178 (64.04%), Query Frame = 0
BLAST of MS019456 vs. ExPASy TrEMBL
Match: A0A5A7TPT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004430 PE=4 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 3.9e-32 Identity = 102/191 (53.40%), Postives = 118/191 (61.78%), Query Frame = 0
BLAST of MS019456 vs. TAIR 10
Match: AT3G52480.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 53.1 bits (126), Expect = 2.5e-07 Identity = 68/196 (34.69%), Postives = 78/196 (39.80%), Query Frame = 0
BLAST of MS019456 vs. TAIR 10
Match: AT3G11640.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52480.1); Has 36 Blast hits to 36 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 51.2 bits (121), Expect = 9.6e-07 Identity = 58/169 (34.32%), Postives = 76/169 (44.97%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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