MS019305 (gene) Bitter gourd (TR) v1

Overview
NameMS019305
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold611: 253647 .. 253889 (+)
RNA-Seq ExpressionMS019305
SyntenyMS019305
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGAGAGAGATGGCTGCTCGTGCTGACCTGGCGAAGATCGGAAGGGAAGGGTTCGAACTGATCGACGAATACTTCGGGCGACCGGCGGCGAGGAGGGCGGCGGCGAGGCCGGCCATTCCTCAGCCGCCGCGTCCGGCGGAGCAACCCCCGAGGAAGAAGAAAGAACCGGCGCCGGTTAACTGCAATCAGGTGGCGAAATCCCGCGGCGGGATCGTCATAACAACTTGGCGTGCTTATTCAAAA

mRNA sequence

GCGAGAGAGATGGCTGCTCGTGCTGACCTGGCGAAGATCGGAAGGGAAGGGTTCGAACTGATCGACGAATACTTCGGGCGACCGGCGGCGAGGAGGGCGGCGGCGAGGCCGGCCATTCCTCAGCCGCCGCGTCCGGCGGAGCAACCCCCGAGGAAGAAGAAAGAACCGGCGCCGGTTAACTGCAATCAGGTGGCGAAATCCCGCGGCGGGATCGTCATAACAACTTGGCGTGCTTATTCAAAA

Coding sequence (CDS)

GCGAGAGAGATGGCTGCTCGTGCTGACCTGGCGAAGATCGGAAGGGAAGGGTTCGAACTGATCGACGAATACTTCGGGCGACCGGCGGCGAGGAGGGCGGCGGCGAGGCCGGCCATTCCTCAGCCGCCGCGTCCGGCGGAGCAACCCCCGAGGAAGAAGAAAGAACCGGCGCCGGTTAACTGCAATCAGGTGGCGAAATCCCGCGGCGGGATCGTCATAACAACTTGGCGTGCTTATTCAAAA

Protein sequence

AREMAARADLAKIGREGFELIDEYFGRPAARRAAARPAIPQPPRPAEQPPRKKKEPAPVNCNQVAKSRGGIVITTWRAYSK
Homology
BLAST of MS019305 vs. NCBI nr
Match: KAG6575082.1 (hypothetical protein SDJN03_25721, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-21
Identity = 62/79 (78.48%), Postives = 67/79 (84.81%), Query Frame = 0

Query: 4  MAARADLAKIGREGFELIDEYFGR-PAARR-AAARPAIPQPPRPAEQPPRKKKE--PAPV 63
          MA RADLAKIGREGFELIDEYFGR PA RR A ARPA+PQ P  AEQPPRK +E  P PV
Sbjct: 1  MAPRADLAKIGREGFELIDEYFGRVPATRRPAVARPALPQAPCKAEQPPRKMREKLPVPV 60

Query: 64 NCNQVAKSRGGIVITTWRA 79
          NCNQVA++RGG+VITTWRA
Sbjct: 61 NCNQVARARGGVVITTWRA 79

BLAST of MS019305 vs. NCBI nr
Match: KAG6575081.1 (hypothetical protein SDJN03_25720, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.9 bits (276), Expect = 5.1e-21
Identity = 63/82 (76.83%), Postives = 67/82 (81.71%), Query Frame = 0

Query: 4  MAARADLAKIGREGFELIDEYFGR-PAARR----AAARPAIPQPPRPAEQPPRKKKE--P 63
          MA R DLAKIGREGF+LIDEYFGR PA RR    AAARPA+PQ P  AEQPPRKK+E  P
Sbjct: 1  MARRGDLAKIGREGFDLIDEYFGRAPATRRAAAVAAARPALPQAPCKAEQPPRKKREKMP 60

Query: 64 APVNCNQVAKSRGGIVITTWRA 79
            VNCNQVAK+RGGIVITTWRA
Sbjct: 61 VAVNCNQVAKARGGIVITTWRA 82

BLAST of MS019305 vs. NCBI nr
Match: KGN47422.1 (hypothetical protein Csa_021740 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 6.5e-16
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 0

Query: 6  ARADLAKIGREGFELIDEYFGRPA---ARRAA---ARPAIPQPPRPAEQPP--RKKKEPA 65
          +R DLAKIGREGF++IDEYFGR +   ARR A   ARPA+PQPPR AEQPP  RK+K  A
Sbjct: 12 SRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQPPRIRKEKPVA 71

Query: 66 PVNCNQVAKSRGGIVITTWRAYSK 82
           V  +QVAK  GG VITTWR Y+K
Sbjct: 72 AVTSDQVAKHGGGTVITTWRPYAK 95

BLAST of MS019305 vs. NCBI nr
Match: XP_023548315.1 (multiple organellar RNA editing factor 3, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.5 bits (210), Expect = 2.3e-13
Identity = 51/67 (76.12%), Postives = 53/67 (79.10%), Query Frame = 0

Query: 4  MAARADLAKIGREGFELIDEYFGR-PAARRAAA----RPAIPQPPRPAEQPPRKKKE--P 63
          MA RADLAKIGREGFELIDEYFGR PA RRAAA    RPA+PQ P  AEQPPRK +E  P
Sbjct: 1  MAPRADLAKIGREGFELIDEYFGRVPATRRAAAAAAGRPALPQAPCKAEQPPRKMREKLP 60

BLAST of MS019305 vs. NCBI nr
Match: KGN47421.1 (hypothetical protein Csa_021737 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 1.2e-09
Identity = 48/84 (57.14%), Postives = 59/84 (70.24%), Query Frame = 0

Query: 8  ADLAKIGREGFELIDEYFGRPA---ARRAAA----RPAIPQPPRP-AEQPPRKKKEP--A 67
          A+LA+IG EGF+LID++FGR +    RR  A    RPA  QPPR  AEQPP K KE   A
Sbjct: 13 ANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPPSKTKEKQGA 72

Query: 68 PVNCNQVAKSRGGIVITTWRAYSK 82
           V  + +AK+RGGIVITTWR+Y+K
Sbjct: 73 VVTSDHLAKTRGGIVITTWRSYAK 96

BLAST of MS019305 vs. ExPASy TrEMBL
Match: A0A0A0KG95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.1e-16
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 0

Query: 6  ARADLAKIGREGFELIDEYFGRPA---ARRAA---ARPAIPQPPRPAEQPP--RKKKEPA 65
          +R DLAKIGREGF++IDEYFGR +   ARR A   ARPA+PQPPR AEQPP  RK+K  A
Sbjct: 12 SRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQPPRIRKEKPVA 71

Query: 66 PVNCNQVAKSRGGIVITTWRAYSK 82
           V  +QVAK  GG VITTWR Y+K
Sbjct: 72 AVTSDQVAKHGGGTVITTWRPYAK 95

BLAST of MS019305 vs. ExPASy TrEMBL
Match: A0A0A0KI19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.7e-10
Identity = 48/84 (57.14%), Postives = 59/84 (70.24%), Query Frame = 0

Query: 8  ADLAKIGREGFELIDEYFGRPA---ARRAAA----RPAIPQPPRP-AEQPPRKKKEP--A 67
          A+LA+IG EGF+LID++FGR +    RR  A    RPA  QPPR  AEQPP K KE   A
Sbjct: 13 ANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPPSKTKEKQGA 72

Query: 68 PVNCNQVAKSRGGIVITTWRAYSK 82
           V  + +AK+RGGIVITTWR+Y+K
Sbjct: 73 VVTSDHLAKTRGGIVITTWRSYAK 96

BLAST of MS019305 vs. ExPASy TrEMBL
Match: A0A5A7U5Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001240 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.0e-06
Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 1  AREMAARADLAKIGREGFELIDEYFGRPAARRAAARPAIPQPPRPAEQPPRKKKEPAPVN 60
          AR+  AR DLA+IG E F LI+E++ RP  R     PA PQP    + P R  +   P+ 
Sbjct: 3  ARKDLARNDLARIGVEAFALIEEHYDRPRRRPRQVVPAPPQPVVAIQPPKRMVESSPPIR 62

Query: 61 CNQVAKSRGGIVITTW 77
          C+Q+AK+ GGI+I  W
Sbjct: 63 CDQLAKAHGGIIIKEW 78

BLAST of MS019305 vs. ExPASy TrEMBL
Match: A0A0A0L5A8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G164540 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.2e-05
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 0

Query: 4  MAAR-ADLAKIGREGFELIDEYFGRPAARRAAARPAIPQPPRPAEQPPRKKKEPAP-VNC 63
          MAAR  DLA+IG EGF  I+E + RP  +     PA PQP   A  PP++K E +P + C
Sbjct: 1  MAARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPV-VAIHPPQRKVESSPSIRC 60

Query: 64 NQVAKSRGGIVITTW 77
          +Q+AK+ GGI+I  W
Sbjct: 61 DQLAKAHGGIIIKEW 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6575082.11.8e-2178.48hypothetical protein SDJN03_25721, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575081.15.1e-2176.83hypothetical protein SDJN03_25720, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN47422.16.5e-1665.48hypothetical protein Csa_021740 [Cucumis sativus][more]
XP_023548315.12.3e-1376.12multiple organellar RNA editing factor 3, mitochondrial [Cucurbita pepo subsp. p... [more]
KGN47421.11.2e-0957.14hypothetical protein Csa_021737 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KG953.1e-1665.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1[more]
A0A0A0KI195.7e-1057.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1[more]
A0A5A7U5Q51.0e-0644.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L5A84.2e-0548.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G164540 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS019305.1MS019305.1mRNA