MS019297 (gene) Bitter gourd (TR) v1

Overview


Name	MS019297
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	phylloplanin-like
Location	scaffold611: 164993 .. 165271 (+)
RNA-Seq Expression	MS019297
Synteny	MS019297

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGCTGGGGTGGAAATGCAATGTGGATCCGGAACCGTAATTTCGTCGGTGAAAACCGACACGTCGGGAAGGTTTTCGATGCTTCTGGATGCGCCTCTGTTGCTGCTCTCCTTCTTACTCGACAACTGCAGTCTCGTCGTCACGACGCCGCTCGCCGACTGCGACGCCGCGCTGCCGTCGTTCGGCGGCCTCATCTCGCCGCTGCAACTCATCGGAAACACATTTCTCGGACTCTTCAACGTCACCAATATCGTTCCCTTAGGCTTCCGCTTCCTCCCC

mRNA sequence

GATGCTGGGGTGGAAATGCAATGTGGATCCGGAACCGTAATTTCGTCGGTGAAAACCGACACGTCGGGAAGGTTTTCGATGCTTCTGGATGCGCCTCTGTTGCTGCTCTCCTTCTTACTCGACAACTGCAGTCTCGTCGTCACGACGCCGCTCGCCGACTGCGACGCCGCGCTGCCGTCGTTCGGCGGCCTCATCTCGCCGCTGCAACTCATCGGAAACACATTTCTCGGACTCTTCAACGTCACCAATATCGTTCCCTTAGGCTTCCGCTTCCTCCCC

Coding sequence (CDS)

GATGCTGGGGTGGAAATGCAATGTGGATCCGGAACCGTAATTTCGTCGGTGAAAACCGACACGTCGGGAAGGTTTTCGATGCTTCTGGATGCGCCTCTGTTGCTGCTCTCCTTCTTACTCGACAACTGCAGTCTCGTCGTCACGACGCCGCTCGCCGACTGCGACGCCGCGCTGCCGTCGTTCGGCGGCCTCATCTCGCCGCTGCAACTCATCGGAAACACATTTCTCGGACTCTTCAACGTCACCAATATCGTTCCCTTAGGCTTCCGCTTCCTCCCC

Protein sequence

DAGVEMQCGSGTVISSVKTDTSGRFSMLLDAPLLLLSFLLDNCSLVVTTPLADCDAALPSFGGLISPLQLIGNTFLGLFNVTNIVPLGFRFLP

Homology

[Close]

BLAST of MS019297 vs. NCBI nr
Match: XP_022138800.1 (phylloplanin-like [Momordica charantia])

HSP 1 Score: 178.7 bits (452), Expect = 2.3e-41
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1   DAGVEMQCGSGTVISSVKTDTSGRFSMLLDAPLLLLSFLLDNCSLVVTTPLADCDAALPS 60
           +AGVEMQCGSGTVISSVKTDTSGRFSMLLDAPLLLLSFLLDNCSLVVTTPLADCDAALPS
Sbjct: 60  NAGVEMQCGSGTVISSVKTDTSGRFSMLLDAPLLLLSFLLDNCSLVVTTPLADCDAALPS 119

Query: 61  FGGLISPLQLIGNTFLGLFNVTNIVPLGFRFLP 94
           FGGLISPLQ IGNTFLGLFNVTNIVPLGFRFLP
Sbjct: 120 FGGLISPLQRIGNTFLGLFNVTNIVPLGFRFLP 152

[Close]

BLAST of MS019297 vs. NCBI nr
Match: XP_038906580.1 (phylloplanin-like [Benincasa hispida])

HSP 1 Score: 148.3 bits (373), Expect = 3.3e-32
Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 1   DAGVEMQCGSGTVISSVKTDTSGRFSMLLDAPLLLLSFLLDNCSLVVTTPLADCDAALPS 60
           +A V+MQCG+G V+SSVKTD +G FS+LLDAP LLLSFLL NCSLVVTTPL DC+ ALPS
Sbjct: 58  NAAVQMQCGAGIVVSSVKTDATGTFSILLDAPQLLLSFLLTNCSLVVTTPLVDCNTALPS 117

Query: 61  FGGLISPLQLIGNTFLGLFNVTNIVPLGFRFLP 94
           FG L+SPLQL+GNTFLGLFNVTN +P+ FRFLP
Sbjct: 118 FGALVSPLQLVGNTFLGLFNVTNFIPVAFRFLP 150

[Close]

BLAST of MS019297 vs. NCBI nr
Match: XP_022930243.1 (phylloplanin-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 148.3 bits (373), Expect = 3.3e-32
Identity = 74/94 (78.72%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1   DAGVEMQCGS-GTVISSVKTDTSGRFSMLLDAPLLLLSFLLDNCSLVVTTPLADCDAALP 60
           +A VEM CG+ GTVISSVK+D +GRFSMLLDAP LLLSFLL+NCSLVVTTPL +C+ A+P
Sbjct: 127 NAAVEMHCGAGGTVISSVKSDATGRFSMLLDAPQLLLSFLLNNCSLVVTTPLVNCNGAMP 186

Query: 61  SFGGLISPLQLIGNTFLGLFNVTNIVPLGFRFLP 94
           SFG L SPLQLIGNTFLGLFN+TNI+P+GFRFLP
Sbjct: 187 SFGALASPLQLIGNTFLGLFNITNIIPVGFRFLP 220

[Close]

BLAST of MS019297 vs. NCBI nr
Match: XP_022930242.1 (uncharacterized protein LOC111436755 isoform X1 [Cucurbita moschata])

HSP 1 Score: 148.3 bits (373), Expect = 3.3e-32
Identity = 74/94 (78.72%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1   DAGVEMQCGS-GTVISSVKTDTSGRFSMLLDAPLLLLSFLLDNCSLVVTTPLADCDAALP 60
           +A VEM CG+ GTVISSVK+D +GRFSMLLDAP LLLSFLL+NCSLVVTTPL +C+ A+P
Sbjct: 144 NAAVEMHCGAGGTVISSVKSDATGRFSMLLDAPQLLLSFLLNNCSLVVTTPLVNCNGAMP 203

Query: 61  SFGGLISPLQLIGNTFLGLFNVTNIVPLGFRFLP 94
           SFG L SPLQLIGNTFLGLFN+TNI+P+GFRFLP
Sbjct: 204 SFGALASPLQLIGNTFLGLFNITNIIPVGFRFLP 237

[Close]

BLAST of MS019297 vs. NCBI nr
Match: KAG7026315.1 (hypothetical protein SDJN02_12816 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.3 bits (373), Expect = 3.3e-32
Identity = 74/94 (78.72%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1   DAGVEMQCGS-GTVISSVKTDTSGRFSMLLDAPLLLLSFLLDNCSLVVTTPLADCDAALP 60
           +A VEM CG+ GTVISSVK+D +GRFSMLLDAP LLLSFLL+NCSLVVTTPL +C+ A+P
Sbjct: 60  NAAVEMHCGAGGTVISSVKSDATGRFSMLLDAPQLLLSFLLNNCSLVVTTPLVNCNGAMP 119

Query: 61  SFGGLISPLQLIGNTFLGLFNVTNIVPLGFRFLP 94
           SFG L SPLQLIGNTFLGLFN+TNI+P+GFRFLP
Sbjct: 120 SFGALASPLQLIGNTFLGLFNITNIIPVGFRFLP 153

[Close]

BLAST of MS019297 vs. ExPASy Swiss-Prot
Match: Q56S59 (Phylloplanin OS=Nicotiana tabacum OX=4097 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-08
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 1   DAGVEMQCGSGTVISSVKTDTSGRFSMLLDAPLLLLSFLLDNCSLVVTTPLADCDAALPS 60
           +A V+++CG+  VISS  T+ SG FS+ ++      +F L NC+LVV TPL+ C+A L S
Sbjct: 59  NASVQLRCGATNVISSTITNGSGAFSLAVN------TFPLLNCNLVVATPLSTCNATLQS 118

Query: 61  FGGLISPLQLIGNTF---LGLFNVTNIVPLGF 90
            G L S L+L+  T     GL  V  + P GF
Sbjct: 119 VGRLASSLRLVNITLGSGTGLIRV-GLAPTGF 143

[Close]

BLAST of MS019297 vs. ExPASy TrEMBL
Match: A0A6J1CAI6 (phylloplanin-like OS=Momordica charantia OX=3673 GN=LOC111009877 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1   DAGVEMQCGSGTVISSVKTDTSGRFSMLLDAPLLLLSFLLDNCSLVVTTPLADCDAALPS 60
           +AGVEMQCGSGTVISSVKTDTSGRFSMLLDAPLLLLSFLLDNCSLVVTTPLADCDAALPS
Sbjct: 60  NAGVEMQCGSGTVISSVKTDTSGRFSMLLDAPLLLLSFLLDNCSLVVTTPLADCDAALPS 119

Query: 61  FGGLISPLQLIGNTFLGLFNVTNIVPLGFRFLP 94
           FGGLISPLQ IGNTFLGLFNVTNIVPLGFRFLP
Sbjct: 120 FGGLISPLQRIGNTFLGLFNVTNIVPLGFRFLP 152

[Close]

BLAST of MS019297 vs. ExPASy TrEMBL
Match: A0A6J1EPU9 (uncharacterized protein LOC111436755 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436755 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.6e-32
Identity = 74/94 (78.72%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1   DAGVEMQCGS-GTVISSVKTDTSGRFSMLLDAPLLLLSFLLDNCSLVVTTPLADCDAALP 60
           +A VEM CG+ GTVISSVK+D +GRFSMLLDAP LLLSFLL+NCSLVVTTPL +C+ A+P
Sbjct: 144 NAAVEMHCGAGGTVISSVKSDATGRFSMLLDAPQLLLSFLLNNCSLVVTTPLVNCNGAMP 203

Query: 61  SFGGLISPLQLIGNTFLGLFNVTNIVPLGFRFLP 94
           SFG L SPLQLIGNTFLGLFN+TNI+P+GFRFLP
Sbjct: 204 SFGALASPLQLIGNTFLGLFNITNIIPVGFRFLP 237

[Close]

BLAST of MS019297 vs. ExPASy TrEMBL
Match: A0A6J1EUI5 (phylloplanin-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436755 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.6e-32
Identity = 74/94 (78.72%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1   DAGVEMQCGS-GTVISSVKTDTSGRFSMLLDAPLLLLSFLLDNCSLVVTTPLADCDAALP 60
           +A VEM CG+ GTVISSVK+D +GRFSMLLDAP LLLSFLL+NCSLVVTTPL +C+ A+P
Sbjct: 127 NAAVEMHCGAGGTVISSVKSDATGRFSMLLDAPQLLLSFLLNNCSLVVTTPLVNCNGAMP 186

Query: 61  SFGGLISPLQLIGNTFLGLFNVTNIVPLGFRFLP 94
           SFG L SPLQLIGNTFLGLFN+TNI+P+GFRFLP
Sbjct: 187 SFGALASPLQLIGNTFLGLFNITNIIPVGFRFLP 220

[Close]

BLAST of MS019297 vs. ExPASy TrEMBL
Match: A0A6J1KIA9 (phylloplanin-like OS=Cucurbita maxima OX=3661 GN=LOC111494688 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.1e-32
Identity = 75/94 (79.79%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 1   DAGVEMQCG-SGTVISSVKTDTSGRFSMLLDAPLLLLSFLLDNCSLVVTTPLADCDAALP 60
           +A VEM CG +GTVISSVK+D +GRFSMLLDAP LLLSFLL+NCSLVVTTPL +C+ ALP
Sbjct: 60  NAAVEMHCGAAGTVISSVKSDATGRFSMLLDAPQLLLSFLLNNCSLVVTTPLVNCNGALP 119

Query: 61  SFGGLISPLQLIGNTFLGLFNVTNIVPLGFRFLP 94
           SFG L SPLQLI NTFLGLFNVTNI+P+GFRFLP
Sbjct: 120 SFGALASPLQLIRNTFLGLFNVTNIIPVGFRFLP 153

[Close]

BLAST of MS019297 vs. ExPASy TrEMBL
Match: A0A1S3C7U3 (phylloplanin-like OS=Cucumis melo OX=3656 GN=LOC103497845 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.5e-30
Identity = 67/92 (72.83%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1   DAGVEMQCGSGTVISSVKTDTSGRFSMLLDAPLLLLSFLLDNCSLVVTTPLADCDAALPS 60
           +A V+MQCG+GTV+SSVKTD +G FS+L+DAP L+L FLL NC+LVVTTPL DC+A LPS
Sbjct: 59  NAEVQMQCGAGTVVSSVKTDATGNFSILIDAPRLMLPFLLTNCTLVVTTPLFDCNAELPS 118

Query: 61  FGGLISPLQLIGNTFLGLFNVTNIVPLGFRFL 93
           FG L+SPLQLIGNTF GLFNVTN +P+GFRF+
Sbjct: 119 FGVLVSPLQLIGNTFHGLFNVTNFIPVGFRFV 150

[Close]

BLAST of MS019297 vs. TAIR 10
Match: AT3G16660.1 (Pollen Ole e 1 allergen and extensin family protein )

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-18
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 1   DAGVEMQCG-SGTVISSVKTDTSGRFSMLLDAPLLLLSFLLDNCSLVVTTPLADCDAALP 60
           +AGVE+QCG    V+S+  T+ +G FS+  D+  +LLS LL +C +VVTTPL+ C+A LP
Sbjct: 87  NAGVELQCGRQNRVVSTATTNAAGLFSLPTDSIQMLLSTLLSDCRVVVTTPLSTCNANLP 146

Query: 61  SFGGLISPLQLIGNTFLGLFNVTNIVPLGFRFL 93
           S G L+S L +IGN+  GL N+ +I+P GF  L
Sbjct: 147 SVGNLVSRLAMIGNSLTGLLNIISIIPAGFGLL 179

[Close]

BLAST of MS019297 vs. TAIR 10
Match: AT3G16670.1 (Pollen Ole e 1 allergen and extensin family protein )

HSP 1 Score: 67.8 bits (164), Expect = 5.3e-12
Identity = 37/90 (41.11%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 1   DAGVEMQCGS-GTVISSVKTDTSGRFSMLLDAPLLLLSFLLDNCSLVVTTPLADCDAALP 60
           +A V++QCG+   V++   T+ +G F+   +   + L  LL++C +VV TP + CDA LP
Sbjct: 61  NAVVQLQCGNLNRVVAETITNIAGLFTFSTNGIQISLPTLLNDCRIVVPTPRSSCDATLP 120

Query: 61  SFGGLISPLQLIGNTFLGLFNVTNIVPLGF 90
           S G LIS L L+G+   GL N+  I+P GF
Sbjct: 121 STGQLISQLNLVGSIVSGLLNIVAILPTGF 150

The following BLAST results are available for this feature:

BLAST of MS019297 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138800.1	2.3e-41	97.85	phylloplanin-like [Momordica charantia]	[more]
XP_038906580.1	3.3e-32	76.34	phylloplanin-like [Benincasa hispida]	[more]
XP_022930243.1	3.3e-32	78.72	phylloplanin-like isoform X2 [Cucurbita moschata]	[more]
XP_022930242.1	3.3e-32	78.72	uncharacterized protein LOC111436755 isoform X1 [Cucurbita moschata]	[more]
KAG7026315.1	3.3e-32	78.72	hypothetical protein SDJN02_12816 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MS019297 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56S59	2.7e-08	42.39	Phylloplanin OS=Nicotiana tabacum OX=4097 PE=1 SV=1	[more]

BLAST of MS019297 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CAI6	1.1e-41	97.85	phylloplanin-like OS=Momordica charantia OX=3673 GN=LOC111009877 PE=4 SV=1	[more]
A0A6J1EPU9	1.6e-32	78.72	uncharacterized protein LOC111436755 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1EUI5	1.6e-32	78.72	phylloplanin-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436755 PE=4 ...	[more]
A0A6J1KIA9	6.1e-32	79.79	phylloplanin-like OS=Cucurbita maxima OX=3661 GN=LOC111494688 PE=4 SV=1	[more]
A0A1S3C7U3	7.5e-30	72.83	phylloplanin-like OS=Cucumis melo OX=3656 GN=LOC103497845 PE=4 SV=1	[more]

BLAST of MS019297 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16660.1	2.2e-18	49.46	Pollen Ole e 1 allergen and extensin family protein	[more]
AT3G16670.1	5.3e-12	41.11	Pollen Ole e 1 allergen and extensin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040404	Phylloplanin-like	PANTHER	PTHR34458	POLLEN OLE E 1 ALLERGEN AND EXTENSIN FAMILY PROTEIN-RELATED	coord: 1..92
None	No IPR available	PANTHER	PTHR34458:SF5	POLLEN OLE E 1 ALLERGEN AND EXTENSIN FAMILY PROTEIN	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019297.1	MS019297.1	mRNA