MS019218 (gene) Bitter gourd (TR) v1

Overview
NameMS019218
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold554: 342331 .. 342498 (-)
RNA-Seq ExpressionMS019218
SyntenyMS019218
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAATTTCAATTTGAATCGTCAGAAGTTGCCAATAAGATTTTGCTCTCCATGTTAATCAGATTGCTCAGAGAGGTTTCTATTTTCAGTAATATCATGGAGGACATTCCAGACGTTCAAATTTCAGATTGCGCTCATTTGCTAGACTTCATCTTATACTATATA

mRNA sequence

ATGATGAAATTTCAATTTGAATCGTCAGAAGTTGCCAATAAGATTTTGCTCTCCATGTTAATCAGATTGCTCAGAGAGGTTTCTATTTTCAGTAATATCATGGAGGACATTCCAGACGTTCAAATTTCAGATTGCGCTCATTTGCTAGACTTCATCTTATACTATATA

Coding sequence (CDS)

ATGATGAAATTTCAATTTGAATCGTCAGAAGTTGCCAATAAGATTTTGCTCTCCATGTTAATCAGATTGCTCAGAGAGGTTTCTATTTTCAGTAATATCATGGAGGACATTCCAGACGTTCAAATTTCAGATTGCGCTCATTTGCTAGACTTCATCTTATACTATATA

Protein sequence

MMKFQFESSEVANKILLSMLIRLLREVSIFSNIMEDIPDVQISDCAHLLDFILYYI
Homology
BLAST of MS019218 vs. NCBI nr
Match: XP_022153444.1 (putative UPF0481 protein At3g02645 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 3.3e-11
Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 0

Query: 1   MMKFQFESSEVANKILLSMLIRLLREVSIFSNIMEDIPDVQISDCAHLLDFI 53
           MM+FQ ESSE+A++ILLSMLI L REVS FSN+ ED+P++QISDCAHLLDF+
Sbjct: 192 MMEFQSESSEIADEILLSMLIGLFREVSPFSNLTEDVPEIQISDCAHLLDFL 243

BLAST of MS019218 vs. NCBI nr
Match: XP_038890629.1 (putative UPF0481 protein At3g02645 [Benincasa hispida])

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 1   MMKFQFESSEVANKILLSMLIRLLREVSIFSNIMEDIPDVQISDCAHLLDFILYYI 57
           MM+FQFESSE +++ILLSM+I L  E+S F N  + IP++QISDCAHLLDF+   I
Sbjct: 190 MMEFQFESSEQSDEILLSMMIGLFTELSPF-NTTDGIPEIQISDCAHLLDFLYQMI 244

BLAST of MS019218 vs. NCBI nr
Match: XP_022979559.1 (putative UPF0481 protein At3g02645 [Cucurbita maxima])

HSP 1 Score: 61.2 bits (147), Expect = 3.2e-06
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 1   MMKFQFESSEVANKILLSMLIRLLREVSIFSNIMEDIPDVQISDCAHLLDFILYYI 57
           MM+FQFES+E +++ LLSMLI L  E+S F N  ++IP++QISDCAHLLDF+   I
Sbjct: 189 MMEFQFESTEQSDETLLSMLIGLFAELSPF-NTTDEIPEIQISDCAHLLDFLYQMI 243

BLAST of MS019218 vs. NCBI nr
Match: KAG6581946.1 (putative UPF0481 protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.2 bits (147), Expect = 3.2e-06
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 1   MMKFQFESSEVANKILLSMLIRLLREVSIFSNIMEDIPDVQISDCAHLLDFILYYI 57
           MM+FQFES+E +++ LLSMLI L  E+S F N  ++IP++QISDCAHLLDF+   I
Sbjct: 189 MMEFQFESTEQSDETLLSMLIGLFAELSPF-NTTDEIPEIQISDCAHLLDFLYQMI 243

BLAST of MS019218 vs. NCBI nr
Match: KAG7018367.1 (putative UPF0481 protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 61.2 bits (147), Expect = 3.2e-06
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 1   MMKFQFESSEVANKILLSMLIRLLREVSIFSNIMEDIPDVQISDCAHLLDFILYYI 57
           MM+FQFES+E +++ LLSMLI L  E+S F N  ++IP++QISDCAHLLDF+   I
Sbjct: 189 MMEFQFESTEQSDETLLSMLIGLFAELSPF-NTTDEIPEIQISDCAHLLDFLYQMI 243

BLAST of MS019218 vs. ExPASy TrEMBL
Match: A0A6J1DJ23 (putative UPF0481 protein At3g02645 OS=Momordica charantia OX=3673 GN=LOC111020951 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-11
Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 0

Query: 1   MMKFQFESSEVANKILLSMLIRLLREVSIFSNIMEDIPDVQISDCAHLLDFI 53
           MM+FQ ESSE+A++ILLSMLI L REVS FSN+ ED+P++QISDCAHLLDF+
Sbjct: 192 MMEFQSESSEIADEILLSMLIGLFREVSPFSNLTEDVPEIQISDCAHLLDFL 243

BLAST of MS019218 vs. ExPASy TrEMBL
Match: A0A5A7TLR9 (Putative UPF0481 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001990 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 1   MMKFQFESSEVANKILLSMLIRLLREVSIFSNIMEDIPDVQISDCAHLLDFILYYI 57
           MM+FQFESS+ +++ILLSM+I L  E+S F N  + IP++QISDCAHLLDF+   I
Sbjct: 191 MMEFQFESSQQSDEILLSMMIGLFTELSPF-NTTDGIPEIQISDCAHLLDFLYQMI 245

BLAST of MS019218 vs. ExPASy TrEMBL
Match: A0A6J1IWY7 (putative UPF0481 protein At3g02645 OS=Cucurbita maxima OX=3661 GN=LOC111479236 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 1   MMKFQFESSEVANKILLSMLIRLLREVSIFSNIMEDIPDVQISDCAHLLDFILYYI 57
           MM+FQFES+E +++ LLSMLI L  E+S F N  ++IP++QISDCAHLLDF+   I
Sbjct: 189 MMEFQFESTEQSDETLLSMLIGLFAELSPF-NTTDEIPEIQISDCAHLLDFLYQMI 243

BLAST of MS019218 vs. ExPASy TrEMBL
Match: A0A6J1GW24 (putative UPF0481 protein At3g02645 OS=Cucurbita moschata OX=3662 GN=LOC111458007 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 1   MMKFQFESSEVANKILLSMLIRLLREVSIFSNIMEDIPDVQISDCAHLLDFILYYI 57
           MM+FQFES+E +++ LLSMLI L  E+S F N  ++IP++QISDCAHLLDF+   I
Sbjct: 189 MMEFQFESTEQSDETLLSMLIGLFAELSPF-NTTDEIPEIQISDCAHLLDFLYQMI 243

BLAST of MS019218 vs. ExPASy TrEMBL
Match: A0A1S3BYU2 (putative UPF0481 protein At3g02645 OS=Cucumis melo OX=3656 GN=LOC103494677 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 1   MMKFQFESSEVANKILLSMLIRLLREVSIFSNIMEDIPDVQISDCAHLLDFILYYI 57
           MM+FQFESS+ +++ILLSM+I L  E+S F N  + IP++QISDCAHLLDF+   I
Sbjct: 191 MMEFQFESSQQSDEILLSMMIGLFTELSPF-NTTDGIPEIQISDCAHLLDFLYQMI 245

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022153444.13.3e-1173.08putative UPF0481 protein At3g02645 [Momordica charantia][more]
XP_038890629.11.4e-0660.71putative UPF0481 protein At3g02645 [Benincasa hispida][more]
XP_022979559.13.2e-0658.93putative UPF0481 protein At3g02645 [Cucurbita maxima][more]
KAG6581946.13.2e-0658.93putative UPF0481 protein, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7018367.13.2e-0658.93putative UPF0481 protein, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DJ231.6e-1173.08putative UPF0481 protein At3g02645 OS=Momordica charantia OX=3673 GN=LOC11102095... [more]
A0A5A7TLR91.6e-0658.93Putative UPF0481 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A6J1IWY71.6e-0658.93putative UPF0481 protein At3g02645 OS=Cucurbita maxima OX=3661 GN=LOC111479236 P... [more]
A0A6J1GW241.6e-0658.93putative UPF0481 protein At3g02645 OS=Cucurbita moschata OX=3662 GN=LOC111458007... [more]
A0A1S3BYU21.6e-0658.93putative UPF0481 protein At3g02645 OS=Cucumis melo OX=3656 GN=LOC103494677 PE=4 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS019218.1MS019218.1mRNA