MS019202 (gene) Bitter gourd (TR) v1

Overview


Name	MS019202
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reverse transcriptase
Location	scaffold20: 2488489 .. 2488716 (+)
RNA-Seq Expression	MS019202
Synteny	MS019202

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATGTTGTGCTTTTAAAAGAATCCTTCAACTTTATGAATGCACTTCTGACCAAGTGATTAATTATGATAAGTCTGTAGTTTGTTTCTCTCCAAATATAGTCAAAGATAGGAGATGTTATCTTCAATCTCTTTTAGGAGTTCGACTGGTGGATAATTTTGGTCCCTATCTTGGACTGCCATCAGCTTTCTCGAGAAGAAGATTAGAGGATTGGAAATTTTTGAAGGAT

mRNA sequence

GAATGTTGTGCTTTTAAAAGAATCCTTCAACTTTATGAATGCACTTCTGACCAAGTGATTAATTATGATAAGTCTGTAGTTTGTTTCTCTCCAAATATAGTCAAAGATAGGAGATGTTATCTTCAATCTCTTTTAGGAGTTCGACTGGTGGATAATTTTGGTCCCTATCTTGGACTGCCATCAGCTTTCTCGAGAAGAAGATTAGAGGATTGGAAATTTTTGAAGGAT

Coding sequence (CDS)

GAATGTTGTGCTTTTAAAAGAATCCTTCAACTTTATGAATGCACTTCTGACCAAGTGATTAATTATGATAAGTCTGTAGTTTGTTTCTCTCCAAATATAGTCAAAGATAGGAGATGTTATCTTCAATCTCTTTTAGGAGTTCGACTGGTGGATAATTTTGGTCCCTATCTTGGACTGCCATCAGCTTTCTCGAGAAGAAGATTAGAGGATTGGAAATTTTTGAAGGAT

Protein sequence

ECCAFKRILQLYECTSDQVINYDKSVVCFSPNIVKDRRCYLQSLLGVRLVDNFGPYLGLPSAFSRRRLEDWKFLKD

Homology

[Close]

BLAST of MS019202 vs. NCBI nr
Match: XP_022143493.1 (uncharacterized protein LOC111013370 [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 4   AFKRILQLYECTSDQVINYDKSVVCFSPNIVKDRRCYLQSLLGVRLVDNFGPYLGLPSAF 63
           A K +L +Y  TSDQ IN+ KS + FSPN+   R+ +L SLL V LV++FG Y GLPS+F
Sbjct: 153 ALKDLLSVYGTTSDQCINFAKSALIFSPNVHILRQQFLPSLLDVVLVNDFGNYFGLPSSF 212

Query: 64  SRRRLEDWKFLKD 77
           SRR+ +DW+FLKD
Sbjct: 213 SRRKGQDWRFLKD 225

[Close]

BLAST of MS019202 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 1.5e-11
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 1   ECCAFKRILQLYECTSDQVINYDKSVVCFSPNIVKDRRCYLQSLLGVRLVDNFGPYLGLP 60
           EC A +R+L  Y   S Q IN+ KS + FSPN+  +R+ YLQ +L V+LV +FG YLGLP
Sbjct: 857 ECLALRRLLDSYGRASGQCINFSKSALLFSPNVHPERQQYLQCILNVKLVSHFGNYLGLP 916

Query: 61  SAFSRRRLEDWK 73
           S F+RRR E  K
Sbjct: 917 SHFTRRRGESRK 928

[Close]

BLAST of MS019202 vs. NCBI nr
Match: XP_030487384.1 (uncharacterized protein LOC115704310 [Cannabis sativa])

HSP 1 Score: 73.9 bits (180), Expect = 6.5e-10
Identity = 31/76 (40.79%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 1   ECCAFKRILQLYECTSDQVINYDKSVVCFSPNIVKDRRCYLQSLLGVRLVDNFGPYLGLP 60
           EC  FK +L+ Y   S Q++N+ KS +CF  N+    +  L +L+GV++VDN+G YLGLP
Sbjct: 390 ECRWFKELLEKYSIASGQLVNFHKSEMCFGRNVSSTVKTQLATLMGVKVVDNYGKYLGLP 449

Query: 61  SAFSRRRLEDWKFLKD 77
           S   R + + ++F+K+
Sbjct: 450 SFVGRTKKQHFEFIKN 465

[Close]

BLAST of MS019202 vs. NCBI nr
Match: XP_019162057.1 (PREDICTED: uncharacterized protein LOC109158596 [Ipomoea nil])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 36/76 (47.37%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 1   ECCAFKRILQLYECTSDQVINYDKSVVCFSPNIVKDRRCYLQSLLGVRLVDNFGPYLGLP 60
           EC   K +L  +   S Q INYDKS++CFS N+ +  R  L S+LGV   D  G YLGLP
Sbjct: 89  ECVKMKWVLDTFSAASGQQINYDKSLLCFSSNVQQHSRLELASVLGVNEGDTTGKYLGLP 148

Query: 61  SAFSRRRLEDWKFLKD 77
           S   RR+ E   FLK+
Sbjct: 149 SLVGRRKKEILGFLKE 164

[Close]

BLAST of MS019202 vs. NCBI nr
Match: XP_013624458.1 (PREDICTED: uncharacterized protein LOC106330555 [Brassica oleracea var. oleracea])

HSP 1 Score: 70.1 bits (170), Expect = 9.4e-09
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 1   ECCAFKRILQLYECTSDQVINYDKSVVCFSPNIVKDRRCYLQSLLGVRLVDNFGPYLGLP 60
           EC   K IL LY+  S Q +NYDKS + FS  I    +  L+ ++G+  +  FG YLGLP
Sbjct: 323 ECRHLKEILNLYQKASGQEVNYDKSAIAFSKGISSTEQQQLKDVMGINKIGGFGRYLGLP 382

Query: 61  SAFSRRRLEDWKFLK 76
               RRR E +++LK
Sbjct: 383 ERIGRRRKEAFEYLK 397

[Close]

BLAST of MS019202 vs. ExPASy TrEMBL
Match: A0A6J1CQU9 (uncharacterized protein LOC111013370 OS=Momordica charantia OX=3673 GN=LOC111013370 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.1e-14
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 4   AFKRILQLYECTSDQVINYDKSVVCFSPNIVKDRRCYLQSLLGVRLVDNFGPYLGLPSAF 63
           A K +L +Y  TSDQ IN+ KS + FSPN+   R+ +L SLL V LV++FG Y GLPS+F
Sbjct: 153 ALKDLLSVYGTTSDQCINFAKSALIFSPNVHILRQQFLPSLLDVVLVNDFGNYFGLPSSF 212

Query: 64  SRRRLEDWKFLKD 77
           SRR+ +DW+FLKD
Sbjct: 213 SRRKGQDWRFLKD 225

[Close]

BLAST of MS019202 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.5e-12
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 1   ECCAFKRILQLYECTSDQVINYDKSVVCFSPNIVKDRRCYLQSLLGVRLVDNFGPYLGLP 60
           EC A +R+L  Y   S Q IN+ KS + FSPN+  +R+ YLQ +L V+LV +FG YLGLP
Sbjct: 857 ECLALRRLLDSYGRASGQCINFSKSALLFSPNVHPERQQYLQCILNVKLVSHFGNYLGLP 916

Query: 61  SAFSRRRLEDWK 73
           S F+RRR E  K
Sbjct: 917 SHFTRRRGESRK 928

[Close]

BLAST of MS019202 vs. ExPASy TrEMBL
Match: A0A803PWX1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.1e-10
Identity = 30/76 (39.47%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 1    ECCAFKRILQLYECTSDQVINYDKSVVCFSPNIVKDRRCYLQSLLGVRLVDNFGPYLGLP 60
            EC  FK +L+ Y   S Q++N+ KS +CF   +    R +L +++GV++VDN+G YLGLP
Sbjct: 1243 ECKGFKELLEKYSKASGQLVNFHKSEMCFGRKVTLPVRTHLANIMGVKVVDNYGKYLGLP 1302

Query: 61   SAFSRRRLEDWKFLKD 77
            S   R + + ++F+K+
Sbjct: 1303 SFVGRTKKQHFEFIKN 1318

[Close]

BLAST of MS019202 vs. ExPASy TrEMBL
Match: A0A803Q3X2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 2   CCAFKRILQLYECTSDQVINYDKSVVCFSPNIVKDRRCYLQSLLGVRLVDNFGPYLGLPS 61
           C  FK +L LY   S Q++NY KS VCF  N+ ++ R  L S +GVR V+N G YLGLPS
Sbjct: 33  CQRFKGLLYLYSAASGQLVNYHKSKVCFGRNVAREARQQLASFMGVREVENHGKYLGLPS 92

Query: 62  AFSRRRLE 70
              R + E
Sbjct: 93  FVGRNKKE 100

[Close]

BLAST of MS019202 vs. ExPASy TrEMBL
Match: A0A803Q0L5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-09
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 2   CCAFKRILQLYECTSDQVINYDKSVVCFSPNIVKDRRCYLQSLLGVRLVDNFGPYLGLPS 61
           C  FK +L+LY   S Q++NY KS VCF  N+ ++ R  L   +GVR VDN G YLGLPS
Sbjct: 277 CQRFKSLLELYSAASGQLVNYHKSEVCFGRNVSREVRQQLALFMGVRQVDNHGKYLGLPS 336

Query: 62  AFSRRRLE 70
              R + E
Sbjct: 337 FVGRNKKE 344

The following BLAST results are available for this feature:

BLAST of MS019202 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143493.1	1.3e-13	56.16	uncharacterized protein LOC111013370 [Momordica charantia]	[more]
XP_022158377.1	1.5e-11	52.78	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_030487384.1	6.5e-10	40.79	uncharacterized protein LOC115704310 [Cannabis sativa]	[more]
XP_019162057.1	1.4e-09	47.37	PREDICTED: uncharacterized protein LOC109158596 [Ipomoea nil]	[more]
XP_013624458.1	9.4e-09	42.67	PREDICTED: uncharacterized protein LOC106330555 [Brassica oleracea var. oleracea...	[more]

BLAST of MS019202 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS019202 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQU9	6.1e-14	56.16	uncharacterized protein LOC111013370 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DX30	7.5e-12	52.78	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A803PWX1	4.1e-10	39.47	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803Q3X2	1.6e-09	48.53	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803Q0L5	2.0e-09	48.53	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of MS019202 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 1..76
None	No IPR available	PANTHER	PTHR33116:SF45	SUBFAMILY NOT NAMED	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019202.1	MS019202.1	mRNA