MS019190 (gene) Bitter gourd (TR) v1

Overview


Name	MS019190
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ROTUNDIFOLIA like 21
Location	scaffold20: 2415932 .. 2416072 (+)
RNA-Seq Expression	MS019190
Synteny	MS019190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGAAGGAGGAGCAGTGGAGGAGTTGCAGAGGGAGAGGGGAAGAAGAAGAAGGTTTCATGGAGATCATCAAGATCATCCCTTGGGGGTTATATTAGGGAGCAAAAAGGAAAGCTTTACATTATCCGAAGCTGTATT

mRNA sequence

ATGAGCAGAAGGAGGAGCAGTGGAGGAGTTGCAGAGGGAGAGGGGAAGAAGAAGAAGGTTTCATGGAGATCATCAAGATCATCCCTTGGGGGTTATATTAGGGAGCAAAAAGGAAAGCTTTACATTATCCGAAGCTGTATT

Coding sequence (CDS)

ATGAGCAGAAGGAGGAGCAGTGGAGGAGTTGCAGAGGGAGAGGGGAAGAAGAAGAAGGTTTCATGGAGATCATCAAGATCATCCCTTGGGGGTTATATTAGGGAGCAAAAAGGAAAGCTTTACATTATCCGAAGCTGTATT

Protein sequence

MSRRRSSGGVAEGEGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCI

Homology

[Close]

BLAST of MS019190 vs. NCBI nr
Match: XP_022143416.1 (uncharacterized protein LOC111013296 [Momordica charantia])

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  MSRRRSSGGVAEGEGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCI 48
          MSRRRSSGGVAEGEGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCI
Sbjct: 1  MSRRRSSGGVAEGEGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCI 47

[Close]

BLAST of MS019190 vs. NCBI nr
Match: XP_038906924.1 (uncharacterized protein LOC120092787 [Benincasa hispida])

HSP 1 Score: 61.2 bits (147), Expect = 2.7e-06
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 10 VAEGEGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCI 48
          + EG+ K+KKVSWR SRSSLGGYIREQKG+LYIIRSCI
Sbjct: 13 MGEGKKKEKKVSWR-SRSSLGGYIREQKGRLYIIRSCI 49

[Close]

BLAST of MS019190 vs. NCBI nr
Match: XP_008461574.1 (PREDICTED: uncharacterized protein LOC103500144 [Cucumis melo] >KAA0036139.1 ROTUNDIFOLIA like 21 [Cucumis melo var. makuwa] >TYK13498.1 ROTUNDIFOLIA like 21 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 3.9e-05
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 4  RRSSGGVAEGEGKK-KKVSWRSSRSSLGGYIREQKGKLYIIRSCI 48
          R +   + EG+ KK KKVSWR SRSSLGGYIREQKG+LYIIRSCI
Sbjct: 3  RSTKTSMGEGKMKKEKKVSWR-SRSSLGGYIREQKGRLYIIRSCI 46

[Close]

BLAST of MS019190 vs. NCBI nr
Match: XP_023528694.1 (uncharacterized protein LOC111791542 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-04
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 9  GVAEGEGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCI 48
          G  + + K KKVSWR SRSS G YIREQKG+LYIIRSCI
Sbjct: 4  GKNKNKNKNKKVSWR-SRSSFGSYIREQKGRLYIIRSCI 41

[Close]

BLAST of MS019190 vs. NCBI nr
Match: XP_011651363.1 (uncharacterized protein LOC105434872 [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-04
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 4  RRSSGGVAEGEGKK-KKVSWRSSRSSLGGYIREQKGKLYIIRSCI 48
          R +   + +G  KK KKVSWR SRSSLGGYI+EQKG+LYIIRSCI
Sbjct: 3  RSTKTSMGDGRIKKDKKVSWR-SRSSLGGYIKEQKGRLYIIRSCI 46

[Close]

BLAST of MS019190 vs. ExPASy TrEMBL
Match: A0A6J1CQ69 (uncharacterized protein LOC111013296 OS=Momordica charantia OX=3673 GN=LOC111013296 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.3e-16
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  MSRRRSSGGVAEGEGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCI 48
          MSRRRSSGGVAEGEGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCI
Sbjct: 1  MSRRRSSGGVAEGEGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCI 47

[Close]

BLAST of MS019190 vs. ExPASy TrEMBL
Match: A0A5D3CQM7 (ROTUNDIFOLIA like 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90G00130 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-05
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 4  RRSSGGVAEGEGKK-KKVSWRSSRSSLGGYIREQKGKLYIIRSCI 48
          R +   + EG+ KK KKVSWR SRSSLGGYIREQKG+LYIIRSCI
Sbjct: 3  RSTKTSMGEGKMKKEKKVSWR-SRSSLGGYIREQKGRLYIIRSCI 46

[Close]

BLAST of MS019190 vs. ExPASy TrEMBL
Match: A0A1S3CFH9 (uncharacterized protein LOC103500144 OS=Cucumis melo OX=3656 GN=LOC103500144 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-05
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 4  RRSSGGVAEGEGKK-KKVSWRSSRSSLGGYIREQKGKLYIIRSCI 48
          R +   + EG+ KK KKVSWR SRSSLGGYIREQKG+LYIIRSCI
Sbjct: 3  RSTKTSMGEGKMKKEKKVSWR-SRSSLGGYIREQKGRLYIIRSCI 46

[Close]

BLAST of MS019190 vs. ExPASy TrEMBL
Match: A0A0A0L9S0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G265250 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-04
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 4  RRSSGGVAEGEGKK-KKVSWRSSRSSLGGYIREQKGKLYIIRSCI 48
          R +   + +G  KK KKVSWR SRSSLGGYI+EQKG+LYIIRSCI
Sbjct: 3  RSTKTSMGDGRIKKDKKVSWR-SRSSLGGYIKEQKGRLYIIRSCI 46

[Close]

BLAST of MS019190 vs. ExPASy TrEMBL
Match: A0A6J1F4S9 (uncharacterized protein LOC111442169 OS=Cucurbita moschata OX=3662 GN=LOC111442169 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.7e-04
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 14 EGKKKKVSWRSSRSSLGGYIREQKGKLYIIRSCI 48
          + K KKVSWR SRSS G YIREQKG+LYIIRSCI
Sbjct: 11 KNKNKKVSWR-SRSSFGSYIREQKGRLYIIRSCI 43

The following BLAST results are available for this feature:

BLAST of MS019190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143416.1	1.1e-15	100.00	uncharacterized protein LOC111013296 [Momordica charantia]	[more]
XP_038906924.1	2.7e-06	81.58	uncharacterized protein LOC120092787 [Benincasa hispida]	[more]
XP_008461574.1	3.9e-05	73.33	PREDICTED: uncharacterized protein LOC103500144 [Cucumis melo] >KAA0036139.1 ROT...	[more]
XP_023528694.1	3.3e-04	71.79	uncharacterized protein LOC111791542 [Cucurbita pepo subsp. pepo]	[more]
XP_011651363.1	3.3e-04	68.89	uncharacterized protein LOC105434872 [Cucumis sativus]	[more]

BLAST of MS019190 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS019190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQ69	5.3e-16	100.00	uncharacterized protein LOC111013296 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A5D3CQM7	1.9e-05	73.33	ROTUNDIFOLIA like 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90G...	[more]
A0A1S3CFH9	1.9e-05	73.33	uncharacterized protein LOC103500144 OS=Cucumis melo OX=3656 GN=LOC103500144 PE=...	[more]
A0A0A0L9S0	1.6e-04	68.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G265250 PE=4 SV=1	[more]
A0A6J1F4S9	2.7e-04	79.41	uncharacterized protein LOC111442169 OS=Cucurbita moschata OX=3662 GN=LOC1114421...	[more]

BLAST of MS019190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 34..47 e-value: 3.6E-5 score: 23.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019190.1	MS019190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008285	negative regulation of cell population proliferation