MS019187 (gene) Bitter gourd (TR) v1

Overview
NameMS019187
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description60S ribosomal protein L32
Locationscaffold20: 2389851 .. 2390051 (-)
RNA-Seq ExpressionMS019187
SyntenyMS019187
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TACCTTCCTAATGGTTTCAAGAAGTTCTTCGTTCACAATGTCAAGGAGGTCGAGGTCTTGATAATGCACAATGGGACTTATTGTGCCGAAATTGCCCACGATGTTTCCACAAGGAAGAGGAAAGAGATTGTGGAAAGAGCAGCCCAACTTGATGTTGTAGTTACCAACAAGCTTGCTAGGTTGCACAGCCAAGAGGATGAA

mRNA sequence

TACCTTCCTAATGGTTTCAAGAAGTTCTTCGTTCACAATGTCAAGGAGGTCGAGGTCTTGATAATGCACAATGGGACTTATTGTGCCGAAATTGCCCACGATGTTTCCACAAGGAAGAGGAAAGAGATTGTGGAAAGAGCAGCCCAACTTGATGTTGTAGTTACCAACAAGCTTGCTAGGTTGCACAGCCAAGAGGATGAA

Coding sequence (CDS)

TACCTTCCTAATGGTTTCAAGAAGTTCTTCGTTCACAATGTCAAGGAGGTCGAGGTCTTGATAATGCACAATGGGACTTATTGTGCCGAAATTGCCCACGATGTTTCCACAAGGAAGAGGAAAGAGATTGTGGAAAGAGCAGCCCAACTTGATGTTGTAGTTACCAACAAGCTTGCTAGGTTGCACAGCCAAGAGGATGAA

Protein sequence

YLPNGFKKFFVHNVKEVEVLIMHNGTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLARLHSQEDE
Homology
[Close]
BLAST of MS019187 vs. NCBI nr
Match: XP_022140193.1 (60S ribosomal protein L32-1 [Momordica charantia] >XP_022140194.1 60S ribosomal protein L32-1 [Momordica charantia])

HSP 1 Score: 125.6 bits (314), Expect = 1.7e-25
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 0 

Query: 1   YLPNGFKKFFVHNVKEVEVLIMHNGTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 60
           YLPNGFKKF VHNVKE+EVL+MHN TYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR
Sbjct: 67  YLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 126

Query: 61  LHSQEDE 68
           L SQEDE
Sbjct: 127 LRSQEDE 133

[Close]
BLAST of MS019187 vs. NCBI nr
Match: KAG6573344.1 (60S ribosomal protein L32-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.6 bits (314), Expect = 1.7e-25
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 0 

Query: 1   YLPNGFKKFFVHNVKEVEVLIMHNGTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 60
           YLPNGFKKF VHNVKE+EVL+MHN TYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR
Sbjct: 67  YLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 126

Query: 61  LHSQEDE 68
           L SQEDE
Sbjct: 127 LRSQEDE 133

[Close]
BLAST of MS019187 vs. NCBI nr
Match: XP_023542869.1 (60S ribosomal protein L32-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.6 bits (314), Expect = 1.7e-25
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 0 

Query: 1   YLPNGFKKFFVHNVKEVEVLIMHNGTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 60
           YLPNGFKKF VHNVKE+EVL+MHN TYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR
Sbjct: 67  YLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 126

Query: 61  LHSQEDE 68
           L SQEDE
Sbjct: 127 LRSQEDE 133

[Close]
BLAST of MS019187 vs. NCBI nr
Match: XP_022955208.1 (60S ribosomal protein L32-1-like [Cucurbita moschata] >XP_022955210.1 60S ribosomal protein L32-1-like [Cucurbita moschata] >XP_022994918.1 60S ribosomal protein L32-1-like [Cucurbita maxima] >XP_022994919.1 60S ribosomal protein L32-1-like [Cucurbita maxima] >KAG7012508.1 60S ribosomal protein L32-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.6 bits (314), Expect = 1.7e-25
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 0 

Query: 1   YLPNGFKKFFVHNVKEVEVLIMHNGTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 60
           YLPNGFKKF VHNVKE+EVL+MHN TYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR
Sbjct: 67  YLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 126

Query: 61  LHSQEDE 68
           L SQEDE
Sbjct: 127 LRSQEDE 133

[Close]
BLAST of MS019187 vs. NCBI nr
Match: XP_021632090.1 (60S ribosomal protein L32-1-like [Manihot esculenta] >OAY32880.1 hypothetical protein MANES_13G052600v8 [Manihot esculenta])

HSP 1 Score: 124.4 bits (311), Expect = 3.7e-25
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 0 

Query: 1   YLPNGFKKFFVHNVKEVEVLIMHNGTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 60
           YLPNGFKKF VHNVKE+E+L+MHN TYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR
Sbjct: 67  YLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 126

Query: 61  LHSQEDE 68
           L SQEDE
Sbjct: 127 LRSQEDE 133

[Close]
BLAST of MS019187 vs. ExPASy Swiss-Prot
Match: P49211 (60S ribosomal protein L32-1 OS=Arabidopsis thaliana OX=3702 GN=RPL32A PE=2 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-24
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 1   YLPNGFKKFFVHNVKEVEVLIMHNGTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 60
           YLPNGFKKF VHN  E+E+L+MHN TYCAEIAH+VST+KRK IVERA+QLDVVVTN+LAR
Sbjct: 67  YLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLAR 126

Query: 61  LHSQEDE 68
           L SQEDE
Sbjct: 127 LRSQEDE 133

[Close]
BLAST of MS019187 vs. ExPASy Swiss-Prot
Match: Q9FHG2 (60S ribosomal protein L32-2 OS=Arabidopsis thaliana OX=3702 GN=RPL32B PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.2e-24
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 0 

Query: 1   YLPNGFKKFFVHNVKEVEVLIMHNGTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 60
           YLPNGFKKF VHN  E+E+L+MHN TYCAEIAH++ST+KRK IVERA+QLDVVV+NKL R
Sbjct: 67  YLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGR 126

Query: 61  LHSQEDE 68
           L SQEDE
Sbjct: 127 LRSQEDE 133

[Close]
BLAST of MS019187 vs. ExPASy Swiss-Prot
Match: Q90YT6 (60S ribosomal protein L32 OS=Ictalurus punctatus OX=7998 GN=rpl32 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.2e-19
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 0 

Query: 2   LPNGFKKFFVHNVKEVEVLIMHNGTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLARL 61
           LP+GFKKF VHNVKE+EVL+M N +YCAEIAH+VS++ RK IVERAAQL + VTN  ARL
Sbjct: 70  LPSGFKKFLVHNVKELEVLLMSNKSYCAEIAHNVSSKNRKVIVERAAQLAIKVTNPNARL 129

Query: 62  HSQEDE 68
            S+E+E
Sbjct: 130 RSEENE 135

[Close]
BLAST of MS019187 vs. ExPASy Swiss-Prot
Match: Q94460 (60S ribosomal protein L32 OS=Drosophila acanthoptera OX=51166 GN=RpL32 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.7e-18
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 0 

Query: 2   LPNGFKKFFVHNVKEVEVLIMHNGTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLARL 61
           LP GFKKF VHNV+E+EVL+M N  YC EIAH VS+ KRKEIVERA QL V +TN  ARL
Sbjct: 69  LPTGFKKFLVHNVRELEVLLMQNREYCGEIAHGVSSNKRKEIVERAKQLSVRLTNPNARL 128

Query: 62  HSQEDE 68
            SQE+E
Sbjct: 129 RSQENE 134

[Close]
BLAST of MS019187 vs. ExPASy Swiss-Prot
Match: E2RKA8 (60S ribosomal protein L32 OS=Canis lupus familiaris OX=9615 GN=RPL32 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.5e-18
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 0 

Query: 2   LPNGFKKFFVHNVKEVEVLIMHNGTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLARL 61
           LP+GF+KF VHNVKE+EVL+M N +YCAEIAH+VS++ RK IVERAAQL + VTN  ARL
Sbjct: 70  LPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARL 129

Query: 62  HSQEDE 68
            S+E+E
Sbjct: 130 RSEENE 135

[Close]
BLAST of MS019187 vs. ExPASy TrEMBL
Match: A0A6J1K6F1 (60S ribosomal protein L32-1-like OS=Cucurbita maxima OX=3661 GN=LOC111490500 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.0e-26
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 0 

Query: 1   YLPNGFKKFFVHNVKEVEVLIMHNGTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 60
           YLPNGFKKF VHNVKE+EVL+MHN TYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR
Sbjct: 67  YLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 126

Query: 61  LHSQEDE 68
           L SQEDE
Sbjct: 127 LRSQEDE 133

[Close]
BLAST of MS019187 vs. ExPASy TrEMBL
Match: A0A6J1CF23 (60S ribosomal protein L32-1 OS=Momordica charantia OX=3673 GN=LOC111010921 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.0e-26
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 0 

Query: 1   YLPNGFKKFFVHNVKEVEVLIMHNGTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 60
           YLPNGFKKF VHNVKE+EVL+MHN TYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR
Sbjct: 67  YLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 126

Query: 61  LHSQEDE 68
           L SQEDE
Sbjct: 127 LRSQEDE 133

[Close]
BLAST of MS019187 vs. ExPASy TrEMBL
Match: A0A6J1GUI9 (60S ribosomal protein L32-1-like OS=Cucurbita moschata OX=3662 GN=LOC111457242 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.0e-26
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 0 

Query: 1   YLPNGFKKFFVHNVKEVEVLIMHNGTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 60
           YLPNGFKKF VHNVKE+EVL+MHN TYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR
Sbjct: 67  YLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 126

Query: 61  LHSQEDE 68
           L SQEDE
Sbjct: 127 LRSQEDE 133

[Close]
BLAST of MS019187 vs. ExPASy TrEMBL
Match: A0A6J1INV4 (60S ribosomal protein L32-1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478603 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-25
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 0 

Query: 1   YLPNGFKKFFVHNVKEVEVLIMHNGTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 60
           YLPNGFKKF VHNVKE+E+L+MHN TYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR
Sbjct: 67  YLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 126

Query: 61  LHSQEDE 68
           L SQEDE
Sbjct: 127 LRSQEDE 133

[Close]
BLAST of MS019187 vs. ExPASy TrEMBL
Match: I3NMP3 (60S ribosomal protein L32A OS=Hevea brasiliensis OX=3981 GN=RPL32B PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-25
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 0 

Query: 1   YLPNGFKKFFVHNVKEVEVLIMHNGTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 60
           YLPNGFKKF VHNVKE+E+L+MHN TYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR
Sbjct: 67  YLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 126

Query: 61  LHSQEDE 68
           L SQEDE
Sbjct: 127 LRSQEDE 133

[Close]
BLAST of MS019187 vs. TAIR 10
Match: AT4G18100.1 (Ribosomal protein L32e )

HSP 1 Score: 113.2 bits (282), Expect = 7.9e-26
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 1   YLPNGFKKFFVHNVKEVEVLIMHNGTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 60
           YLPNGFKKF VHN  E+E+L+MHN TYCAEIAH+VST+KRK IVERA+QLDVVVTN+LAR
Sbjct: 67  YLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLAR 126

Query: 61  LHSQEDE 68
           L SQEDE
Sbjct: 127 LRSQEDE 133

[Close]
BLAST of MS019187 vs. TAIR 10
Match: AT5G46430.1 (Ribosomal protein L32e )

HSP 1 Score: 111.3 bits (277), Expect = 3.0e-25
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 0 

Query: 1   YLPNGFKKFFVHNVKEVEVLIMHNGTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 60
           YLPNGFKKF VHN  E+E+L+MHN TYCAEIAH++ST+KRK IVERA+QLDVVV+NKL R
Sbjct: 67  YLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGR 126

Query: 61  LHSQEDE 68
           L SQEDE
Sbjct: 127 LRSQEDE 133

[Close]
BLAST of MS019187 vs. TAIR 10
Match: AT5G46430.2 (Ribosomal protein L32e )

HSP 1 Score: 111.3 bits (277), Expect = 3.0e-25
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 0 

Query: 1   YLPNGFKKFFVHNVKEVEVLIMHNGTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLAR 60
           YLPNGFKKF VHN  E+E+L+MHN TYCAEIAH++ST+KRK IVERA+QLDVVV+NKL R
Sbjct: 67  YLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGR 126

Query: 61  LHSQEDE 68
           L SQEDE
Sbjct: 127 LRSQEDE 133

The following BLAST results are available for this feature:
BLAST of MS019187 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022140193.11.7e-2592.5460S ribosomal protein L32-1 [Momordica charantia] >XP_022140194.1 60S ribosomal ... [more]
KAG6573344.11.7e-2592.5460S ribosomal protein L32-1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023542869.11.7e-2592.5460S ribosomal protein L32-1 [Cucurbita pepo subsp. pepo][more]
XP_022955208.11.7e-2592.5460S ribosomal protein L32-1-like [Cucurbita moschata] >XP_022955210.1 60S riboso... [more]
XP_021632090.13.7e-2591.0460S ribosomal protein L32-1-like [Manihot esculenta] >OAY32880.1 hypothetical pr... [more]
BLAST of MS019187 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P492111.1e-2480.6060S ribosomal protein L32-1 OS=Arabidopsis thaliana OX=3702 GN=RPL32A PE=2 SV=2[more]
Q9FHG24.2e-2477.6160S ribosomal protein L32-2 OS=Arabidopsis thaliana OX=3702 GN=RPL32B PE=2 SV=1[more]
Q90YT69.2e-1969.7060S ribosomal protein L32 OS=Ictalurus punctatus OX=7998 GN=rpl32 PE=2 SV=1[more]
Q944602.7e-1869.7060S ribosomal protein L32 OS=Drosophila acanthoptera OX=51166 GN=RpL32 PE=2 SV=1[more]
E2RKA83.5e-1868.1860S ribosomal protein L32 OS=Canis lupus familiaris OX=9615 GN=RPL32 PE=1 SV=1[more]
BLAST of MS019187 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K6F18.0e-2692.5460S ribosomal protein L32-1-like OS=Cucurbita maxima OX=3661 GN=LOC111490500 PE=... [more]
A0A6J1CF238.0e-2692.5460S ribosomal protein L32-1 OS=Momordica charantia OX=3673 GN=LOC111010921 PE=3 ... [more]
A0A6J1GUI98.0e-2692.5460S ribosomal protein L32-1-like OS=Cucurbita moschata OX=3662 GN=LOC111457242 P... [more]
A0A6J1INV41.8e-2591.0460S ribosomal protein L32-1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
I3NMP31.8e-2591.0460S ribosomal protein L32A OS=Hevea brasiliensis OX=3981 GN=RPL32B PE=2 SV=1[more]
BLAST of MS019187 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G18100.17.9e-2680.60Ribosomal protein L32e [more]
AT5G46430.13.0e-2577.61Ribosomal protein L32e [more]
AT5G46430.23.0e-2577.61Ribosomal protein L32e [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001515Ribosomal protein L32eSMARTSM01393Ribosomal_L32e_2coord: 1..56
e-value: 1.1E-11
score: 54.8
IPR001515Ribosomal protein L32ePFAMPF01655Ribosomal_L32ecoord: 2..56
e-value: 9.5E-23
score: 80.7
IPR001515Ribosomal protein L32ePANTHERPTHR2341360S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT Ncoord: 1..67
NoneNo IPR availablePANTHERPTHR23413:SF1460S RIBOSOMAL PROTEIN L32-1-LIKEcoord: 1..67
IPR036351Ribosomal protein L32e superfamilySUPERFAMILY52042Ribosomal protein L32ecoord: 2..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS019187.1MS019187.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome