MS019175 (gene) Bitter gourd (TR) v1

Overview


Name	MS019175
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold20: 2264987 .. 2265223 (+)
RNA-Seq Expression	MS019175
Synteny	MS019175

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTCTCCAAAAACGTCTTATCGGAGATGAAGACATCGGGTCGGAGTTTCTAATGGAGTCGCACGTGAGTCGAATTTTGGCAGAGTCTCTAAGGTTCCAAACTATGACAACCCCGAACGCGAACATGGGTTCGGTGCGGGACTGCGAACGGCCACCGCGCTACGACAGCTGCCTCGGCGAGAAAAGGAATACACCACCAGCGGAAAATTGTGGCACCTTCAACCGTGCCAATCCCTGT

mRNA sequence

GGTCTCCAAAAACGTCTTATCGGAGATGAAGACATCGGGTCGGAGTTTCTAATGGAGTCGCACGTGAGTCGAATTTTGGCAGAGTCTCTAAGGTTCCAAACTATGACAACCCCGAACGCGAACATGGGTTCGGTGCGGGACTGCGAACGGCCACCGCGCTACGACAGCTGCCTCGGCGAGAAAAGGAATACACCACCAGCGGAAAATTGTGGCACCTTCAACCGTGCCAATCCCTGT

Coding sequence (CDS)

GGTCTCCAAAAACGTCTTATCGGAGATGAAGACATCGGGTCGGAGTTTCTAATGGAGTCGCACGTGAGTCGAATTTTGGCAGAGTCTCTAAGGTTCCAAACTATGACAACCCCGAACGCGAACATGGGTTCGGTGCGGGACTGCGAACGGCCACCGCGCTACGACAGCTGCCTCGGCGAGAAAAGGAATACACCACCAGCGGAAAATTGTGGCACCTTCAACCGTGCCAATCCCTGT

Protein sequence

GLQKRLIGDEDIGSEFLMESHVSRILAESLRFQTMTTPNANMGSVRDCERPPRYDSCLGEKRNTPPAENCGTFNRANPC

Homology

[Close]

BLAST of MS019175 vs. NCBI nr
Match: XP_022143399.1 (uncharacterized protein LOC111013278 [Momordica charantia])

HSP 1 Score: 160.6 bits (405), Expect = 5.5e-36
Identity = 75/79 (94.94%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   GLQKRLIGDEDIGSEFLMESHVSRILAESLRFQTMTTPNANMGSVRDCERPPRYDSCLGE 60
           G  KRLIGDEDIGSEFLME H+SRILAESLRFQTMTTPNANMGSVRDCERPPRYDSCLGE
Sbjct: 40  GNHKRLIGDEDIGSEFLMELHLSRILAESLRFQTMTTPNANMGSVRDCERPPRYDSCLGE 99

Query: 61  KRNTPPAENCGTFNRANPC 80
           KRNTPPAENCGTFNRANPC
Sbjct: 100 KRNTPPAENCGTFNRANPC 118

[Close]

BLAST of MS019175 vs. NCBI nr
Match: XP_022998176.1 (uncharacterized protein LOC111492901 [Cucurbita maxima])

HSP 1 Score: 116.7 bits (291), Expect = 9.1e-23
Identity = 56/81 (69.14%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 1   GLQKRLIGDEDIGSEFLMESHVSRILAE--SLRFQTMTTPNANMGSVRDCERPPRYDSCL 60
           G  K +IGD DI +EFLMESH+SR+LAE   LRF+TM +PN N+ SV DCERPPRYDSCL
Sbjct: 39  GPGKHVIGD-DIDTEFLMESHISRVLAEEDELRFETMRSPNPNIASVVDCERPPRYDSCL 98

Query: 61  GEKRNTPPAENCGTFNRANPC 80
           GE +N PP+ENC  FNRANPC
Sbjct: 99  GEGKNNPPSENCDPFNRANPC 118

[Close]

BLAST of MS019175 vs. NCBI nr
Match: KAE8650593.1 (hypothetical protein Csa_011480, partial [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 9.1e-23
Identity = 58/78 (74.36%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 2  LQKRLIGDEDIGSEFLMESHVSRILAESLRFQTMTTPNANMGSVRDCERPPRYDSCLGEK 61
          L KRLIG  DI ++FLMESHVSRILAE LRF+TM TPNAN  SV +CERPPRYDSCLGE 
Sbjct: 1  LGKRLIG--DIDTDFLMESHVSRILAE-LRFETMRTPNANSASVVNCERPPRYDSCLGEA 60

Query: 62 RNTPPAENCGTFNRANPC 80
          R+ PP+ENC  +NRANPC
Sbjct: 61 RDNPPSENCDPYNRANPC 75

[Close]

BLAST of MS019175 vs. NCBI nr
Match: XP_022998105.1 (uncharacterized protein LOC111492854 [Cucurbita maxima])

HSP 1 Score: 115.5 bits (288), Expect = 2.0e-22
Identity = 55/76 (72.37%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 4   KRLIGDEDIGSEFLMESHVSRILAESLRFQTMTTPNANMGSVRDCERPPRYDSCLGEKRN 63
           K LIGD+DI SEFLMESH+SRILA S  FQT  T +AN  S   CERPPRYDSCLG+K N
Sbjct: 42  KYLIGDQDIDSEFLMESHISRILAGSQDFQTSKTNDANKASGGGCERPPRYDSCLGQKSN 101

Query: 64  TPPAENCGTFNRANPC 80
            PP ENCGTFNR NPC
Sbjct: 102 NPPPENCGTFNRNNPC 117

[Close]

BLAST of MS019175 vs. NCBI nr
Match: KAG7036723.1 (hypothetical protein SDJN02_00343, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.2 bits (287), Expect = 2.6e-22
Identity = 55/81 (67.90%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 1   GLQKRLIGDEDIGSEFLMESHVSRILAE--SLRFQTMTTPNANMGSVRDCERPPRYDSCL 60
           G  K +IGD DI +EFLMESH+SR+LAE   LRF+TM +PN N+ SV DCERPPR+DSCL
Sbjct: 39  GPGKHVIGD-DIDNEFLMESHISRVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCL 98

Query: 61  GEKRNTPPAENCGTFNRANPC 80
           GE +N PP+ENC  FNRANPC
Sbjct: 99  GEGKNNPPSENCDPFNRANPC 118

[Close]

BLAST of MS019175 vs. ExPASy TrEMBL
Match: A0A6J1CP71 (uncharacterized protein LOC111013278 OS=Momordica charantia OX=3673 GN=LOC111013278 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.7e-36
Identity = 75/79 (94.94%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   GLQKRLIGDEDIGSEFLMESHVSRILAESLRFQTMTTPNANMGSVRDCERPPRYDSCLGE 60
           G  KRLIGDEDIGSEFLME H+SRILAESLRFQTMTTPNANMGSVRDCERPPRYDSCLGE
Sbjct: 40  GNHKRLIGDEDIGSEFLMELHLSRILAESLRFQTMTTPNANMGSVRDCERPPRYDSCLGE 99

Query: 61  KRNTPPAENCGTFNRANPC 80
           KRNTPPAENCGTFNRANPC
Sbjct: 100 KRNTPPAENCGTFNRANPC 118

[Close]

BLAST of MS019175 vs. ExPASy TrEMBL
Match: A0A6J1K9J3 (uncharacterized protein LOC111492901 OS=Cucurbita maxima OX=3661 GN=LOC111492901 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.4e-23
Identity = 56/81 (69.14%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 1   GLQKRLIGDEDIGSEFLMESHVSRILAE--SLRFQTMTTPNANMGSVRDCERPPRYDSCL 60
           G  K +IGD DI +EFLMESH+SR+LAE   LRF+TM +PN N+ SV DCERPPRYDSCL
Sbjct: 39  GPGKHVIGD-DIDTEFLMESHISRVLAEEDELRFETMRSPNPNIASVVDCERPPRYDSCL 98

Query: 61  GEKRNTPPAENCGTFNRANPC 80
           GE +N PP+ENC  FNRANPC
Sbjct: 99  GEGKNNPPSENCDPFNRANPC 118

[Close]

BLAST of MS019175 vs. ExPASy TrEMBL
Match: A0A0A0L9X5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298070 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.4e-23
Identity = 58/78 (74.36%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 2   LQKRLIGDEDIGSEFLMESHVSRILAESLRFQTMTTPNANMGSVRDCERPPRYDSCLGEK 61
           L KRLIG  DI ++FLMESHVSRILAE LRF+TM TPNAN  SV +CERPPRYDSCLGE 
Sbjct: 40  LGKRLIG--DIDTDFLMESHVSRILAE-LRFETMRTPNANSASVVNCERPPRYDSCLGEA 99

Query: 62  RNTPPAENCGTFNRANPC 80
           R+ PP+ENC  +NRANPC
Sbjct: 100 RDNPPSENCDPYNRANPC 114

[Close]

BLAST of MS019175 vs. ExPASy TrEMBL
Match: A0A6J1KBP5 (uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.8e-23
Identity = 55/76 (72.37%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 4   KRLIGDEDIGSEFLMESHVSRILAESLRFQTMTTPNANMGSVRDCERPPRYDSCLGEKRN 63
           K LIGD+DI SEFLMESH+SRILA S  FQT  T +AN  S   CERPPRYDSCLG+K N
Sbjct: 42  KYLIGDQDIDSEFLMESHISRILAGSQDFQTSKTNDANKASGGGCERPPRYDSCLGQKSN 101

Query: 64  TPPAENCGTFNRANPC 80
            PP ENCGTFNR NPC
Sbjct: 102 NPPPENCGTFNRNNPC 117

[Close]

BLAST of MS019175 vs. ExPASy TrEMBL
Match: A0A6J1G8W5 (uncharacterized protein LOC111452043 OS=Cucurbita moschata OX=3662 GN=LOC111452043 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.3e-22
Identity = 55/81 (67.90%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 1   GLQKRLIGDEDIGSEFLMESHVSRILAE--SLRFQTMTTPNANMGSVRDCERPPRYDSCL 60
           G  K +IGD DI +EFLMESH+SR+LAE   LRF+TM +PN N+ SV DCERPPR+DSCL
Sbjct: 39  GPGKHVIGD-DIDTEFLMESHISRVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCL 98

Query: 61  GEKRNTPPAENCGTFNRANPC 80
           GE +N PP+ENC  FNRANPC
Sbjct: 99  GEGKNNPPSENCDPFNRANPC 118

The following BLAST results are available for this feature:

BLAST of MS019175 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143399.1	5.5e-36	94.94	uncharacterized protein LOC111013278 [Momordica charantia]	[more]
XP_022998176.1	9.1e-23	69.14	uncharacterized protein LOC111492901 [Cucurbita maxima]	[more]
KAE8650593.1	9.1e-23	74.36	hypothetical protein Csa_011480, partial [Cucumis sativus]	[more]
XP_022998105.1	2.0e-22	72.37	uncharacterized protein LOC111492854 [Cucurbita maxima]	[more]
KAG7036723.1	2.6e-22	67.90	hypothetical protein SDJN02_00343, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MS019175 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS019175 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CP71	2.7e-36	94.94	uncharacterized protein LOC111013278 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1K9J3	4.4e-23	69.14	uncharacterized protein LOC111492901 OS=Cucurbita maxima OX=3661 GN=LOC111492901...	[more]
A0A0A0L9X5	4.4e-23	74.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298070 PE=4 SV=1	[more]
A0A6J1KBP5	9.8e-23	72.37	uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854...	[more]
A0A6J1G8W5	1.3e-22	67.90	uncharacterized protein LOC111452043 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]

BLAST of MS019175 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019175.1	MS019175.1	mRNA