MS019165 (gene) Bitter gourd (TR) v1

Overview


Name	MS019165
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	THO complex subunit 4D
Location	scaffold20: 2144171 .. 2147040 (-)
RNA-Seq Expression	MS019165
Synteny	MS019165

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACGCCTCTGGATATGTCACTAGAGGACATGATAAAGAAGAATAACCGTGAGAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGTAGTGATAGGGTCGATTCGTAGAGGCCCTCTCAGCATAAATACACGGCCATCTGCTTTCTCAATTAGCAAGGCAAGCTTCAAACTGTTGATGTTTAATGCATATGCTTGAGAACCTGATATTCCTTGAAAATACATGCTTATGGGGATCTCAAATAACATTATAGTAACTCTAACAGAAGAGGCTCAGTAAAATTGTTGTTCTATGGAGAATCTCATTGTGGCTCACCCTCTTATCCGTATCGCCATCTGGTGTATTTGTACCATTATCTTTGCAAATGTTGAATACGTGTGGGTTATCTGGGTTATTTTCAAGGGACTGTCAAGAGTGGAGAATTATATTCTTGTCGATTTATAAGCTGATATGTGTTTTCCCCATCTGGATTCTTATCTGCATACTTTCATCAGCCCCCACGCAGAATGAAGCATGTTCAATGGCAGCATGATTTATTCGAAGACAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAGGGTACAACTTAAGCCATCTGTATTTGACTAAAGATGCTTTCTCTTCATTTTTTGATTAACATTCTCTTGGAACCTGACGGTGAACTCAGGAGTTGTTCTCTGAGATTGGAGACCTGAAAAGATTTGCAATTCATTATGACAAAAATGGCCGTCCAAGTGTAAGTTCCTACACTATATTTTTGTAAAAATTTGTAGTAATATGTTGCTGTCTGGTTTTTTAGTTTTTCTGGAATCAAGTATCAATGTTATTTTTGTAGTATAGACTTCTTGTCTCTCAGAAGTCAGAACTGTGTGACCATTGAATGAATATTTGCTTTTGGTGGATTTAGATTTATCTATATGCAATATTGATTTTTTACTTCAAAAGATAGATAGCCCTAGAAAAAACAATTACTAGGACTTTGCTACTAGAATACGTGTTATGACTGCAAAAGCCTTGACTACTTTGGCCAACAAACAGTACACAATGAAACATGATCTTAACAAACTTTAAATCATATTATTTAAGCTTGCTCCTTTATAGACATTGCCCAATAGAATGCGGAAGCTTCATATGTGTATAAAGTTTGCAATCTTTACTAGTGATACCACAAAATGAGACTAGTTGGAGACAAAGGCTGAGTAAGATTGAAAGAGACACTGTTTTTCTTCTCTTTATCCATCCCTTCAAGTTTCTGAACGTTTTTTTGGAAGGGCTTGATTGACACCACCCTCTGAGCTGGAGATGCCTTTTATGCCCCCTTATCTCTAGAAAAGACAAATAAAGGTGGTCATGTTTAGATTTGTTTGTAATAAGCCTCTGGGTTCGAATGGTTTCTCTATGGCTTTTGTTCTTCTTTGGATAAATTGGGATGTGTCAAAGGTGATAACCTTACGGTTTATTAGTTTTGTGTGAAGGGTGGAGTCATACACTTGCATTATCTTCAAGAAGTCCTCTACTGGAGCATAAGGGACGCCTTAAAAATAATAGCGAAGATTTTAGTTGAATTTGTTAGCGTTGATTGAGAGAAAAACAACCATAAAGAACAAAAAAAATGAATATAGGAAGAAAATGTAGATTTTTTTTTTGTCTTATGAACGCAAGGTTTTTTTATTTTTGTCTACTGCCTTGACACAAACATATTCTTGAGCGTGAATATGATGTAGTTTCTATGCTAATCATAGAAAAATCAGCACAACTCAACTAAAAGTTTGCTAGTTCAGTGTCATTCTATAAGTTTGCTAGTTGAGTTGTGCTTATTTCTAATTCTTGCTCTTCTTGCTTGTCATTGTATTCATATTAGGGGTGAACATCAGTTGGAAAGTGTTGGTTTTGGCCGAAAATCTATCATTCTGTTTTGGTTGGTTGAAAACTAGAAATATTTTAAGCTTTATACTGACTGAATGTTTATATCGGTTCAGTTGGTTGGTTTTTGGTGAACATTAGAGGAAGAGATGCTGCTGTGGTGTGGCCACACAGCAAGGATTGAGATGGGAGGTGGAGAAGAGAGGGGAAAGGGAGTGAGAAAAATGGAAGACGAAATGAGGGAGGGAAGGGAGGGGTGGAAGGGAAAGAAAAAAGAGAGGGAAGGGGGGAGAGAAATCAGAGAGAAGGGGTCATGGGATGGGAGGATAAAAGAGGGAGGGAGAGAAAGAAATAAAGGAGAGAGAGGGAGGGAGAGGGGGACACGTGAAATGGTGAGAGGATTTTTTTATTTATTAATCAATTGGTTGGTTAGAATGGCACTTTTTGGCCACTCGCACTGACTGATGAGTCGGTTTTTTACTACCAACTTTGATTGAATGTAGGTTTTAACCAACCGACATTGGTTTGGTCTGTTTTCAGATTTCCTTGTTCACCCCTAATTCATATTTAGTTTCTTTTAAGTTGACATGAGACGTATCCGCTCATATGATAATTGTTGCACTTGTGCTTTAAATGTGTTCTTAATTGGATCATGGTTGGTTCTCTTATCAAGCTTTAGTTGGCTGATAAACTTTCCGTTGTTCATTAAAGGGCTCGGCAGAGGTGGTATATACTCGTAGGAGTGATGCATTTGCTGCTTTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCCATGAAGATTGAAATTCTTCGCGATAATGCTGAAATGCCAGTTTCTGCACGTATAAACGTCACTGGACTGAATGGGAGAAGCAGGAGGACAGTTGTTCTAACGTATGTAGTATTC

mRNA sequence

ATGGCTACGCCTCTGGATATGTCACTAGAGGACATGATAAAGAAGAATAACCGTGAGAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGTAGTGATAGGGTCGATTCGTAGAGGCCCTCTCAGCATAAATACACGGCCATCTGCTTTCTCAATTAGCAAGGCAAGCTTCAAACTAAGAGGCTCAGTAAAATTGTTGTTCTATGGAGAATCTCATTGTGGCTCACCCTCTTATCCGTATCGCCATCTGCCCCCACGCAGAATGAAGCATGTTCAATGGCAGCATGATTTATTCGAAGACAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAGGGAGTTGTTCTCTGAGATTGGAGACCTGAAAAGATTTGCAATTCATTATGACAAAAATGGCCGTCCAAGTGGCTCGGCAGAGGTGGTATATACTCGTAGGAGTGATGCATTTGCTGCTTTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCCATGAAGATTGAAATTCTTCGCGATAATGCTGAAATGCCAGTTTCTGCACGTATAAACGTCACTGGACTGAATGGGAGAAGCAGGAGGACAGTTGTTCTAACGTATGTAGTATTC

Coding sequence (CDS)

ATGGCTACGCCTCTGGATATGTCACTAGAGGACATGATAAAGAAGAATAACCGTGAGAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGTAGTGATAGGGTCGATTCGTAGAGGCCCTCTCAGCATAAATACACGGCCATCTGCTTTCTCAATTAGCAAGGCAAGCTTCAAACTAAGAGGCTCAGTAAAATTGTTGTTCTATGGAGAATCTCATTGTGGCTCACCCTCTTATCCGTATCGCCATCTGCCCCCACGCAGAATGAAGCATGTTCAATGGCAGCATGATTTATTCGAAGACAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAGGGAGTTGTTCTCTGAGATTGGAGACCTGAAAAGATTTGCAATTCATTATGACAAAAATGGCCGTCCAAGTGGCTCGGCAGAGGTGGTATATACTCGTAGGAGTGATGCATTTGCTGCTTTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCCATGAAGATTGAAATTCTTCGCGATAATGCTGAAATGCCAGTTTCTGCACGTATAAACGTCACTGGACTGAATGGGAGAAGCAGGAGGACAGTTGTTCTAACGTATGTAGTATTC

Protein sequence

MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGRVVIGSIRRGPLSINTRPSAFSISKASFKLRGSVKLLFYGESHCGSPSYPYRHLPPRRMKHVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEILRDNAEMPVSARINVTGLNGRSRRTVVLTYVVF

Homology

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BLAST of MS019165 vs. NCBI nr
Match: TYK01611.1 (THO complex subunit 4D [Cucumis melo var. makuwa])

HSP 1 Score: 399.1 bits (1024), Expect = 2.7e-107
Identity = 207/231 (89.61%), Postives = 215/231 (93.07%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGR-VVIGSIRRGPLSINTRPS 60
           M TPLDMSLED+IKKNNREKLRARGRARRGRGAGGSFNGGR VVIGS+RRGPL IN R S
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AFSISKASFKLRGSVKLLFYGESHCGSPSYPYRHLPPRRMKHVQWQHDLFEDSLRASGIS 120
           A+SI KASFKL GSV +LF GESHCGSPS P   LPP RMK+VQWQHDLFEDSLRASGIS
Sbjct: 61  AYSIRKASFKLSGSV-MLFCGESHCGSPSDPNCLLPPHRMKNVQWQHDLFEDSLRASGIS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           GI+IGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF
Sbjct: 121 GIQIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEILRDNAEMPVSARINVTGLNGRSRRTVVLTYV 231
           AALKRYNNVLLDGKPMKIE+L DNAEMPVSARINVTG NGR+RRTVVLTYV
Sbjct: 181 AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGTNGRNRRTVVLTYV 230

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BLAST of MS019165 vs. NCBI nr
Match: XP_022143379.1 (THO complex subunit 4D-like [Momordica charantia])

HSP 1 Score: 370.9 bits (951), Expect = 7.9e-99
Identity = 197/228 (86.40%), Postives = 198/228 (86.84%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGRVVIGSIRRGPLSINTRPSA 60
           MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGRVVIGSIRRGPLSINTRPSA
Sbjct: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGRVVIGSIRRGPLSINTRPSA 60

Query: 61  FSISKASFKLRGSVKLLFYGESHCGSPSYPYRHLPPRRMKHVQWQHDLFEDSLRASGISG 120
           FSISK                             PPRRMK+VQWQHDLFEDSLRASGISG
Sbjct: 61  FSISK-----------------------------PPRRMKNVQWQHDLFEDSLRASGISG 120

Query: 121 IEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFA 180
           IEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFA
Sbjct: 121 IEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFA 180

Query: 181 ALKRYNNVLLDGKPMKIEILRDNAEMPVSARINVTGLNGRSRRTVVLT 229
           ALKRYNNVLLDGKPMKIEIL DNAEMPVSARINVTGLNGRSRRTVVLT
Sbjct: 181 ALKRYNNVLLDGKPMKIEILGDNAEMPVSARINVTGLNGRSRRTVVLT 199

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BLAST of MS019165 vs. NCBI nr
Match: XP_022935328.1 (THO complex subunit 4D-like [Cucurbita moschata] >XP_022935329.1 THO complex subunit 4D-like [Cucurbita moschata] >XP_022935330.1 THO complex subunit 4D-like [Cucurbita moschata])

HSP 1 Score: 354.0 bits (907), Expect = 9.9e-94
Identity = 188/229 (82.10%), Postives = 195/229 (85.15%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGR-VVIGSIRRGPLSINTRPS 60
           MATPLDMSLED+IKKNNREKLRARGRARRGRGAGGS+NGGR VVIGS+RRGPL IN RPS
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AFSISKASFKLRGSVKLLFYGESHCGSPSYPYRHLPPRRMKHVQWQHDLFEDSLRASGIS 120
           AFSISK                             PPRRMK+VQWQHDLFEDSLRASGIS
Sbjct: 61  AFSISK-----------------------------PPRRMKNVQWQHDLFEDSLRASGIS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF
Sbjct: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEILRDNAEMPVSARINVTGLNGRSRRTVVLT 229
           AALKRYNNVLLDGKPMKIE+L DNA+ PVSARINVTG+NGRSRRTVVLT
Sbjct: 181 AALKRYNNVLLDGKPMKIEMLGDNADTPVSARINVTGVNGRSRRTVVLT 200

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BLAST of MS019165 vs. NCBI nr
Match: XP_023527122.1 (THO complex subunit 4D [Cucurbita pepo subsp. pepo])

HSP 1 Score: 354.0 bits (907), Expect = 9.9e-94
Identity = 188/229 (82.10%), Postives = 195/229 (85.15%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGR-VVIGSIRRGPLSINTRPS 60
           MATPLDMSLED+IKKNNREKLRARGRARRGRGAGGS+NGGR VVIGS+RRGPL IN RPS
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AFSISKASFKLRGSVKLLFYGESHCGSPSYPYRHLPPRRMKHVQWQHDLFEDSLRASGIS 120
           AFSISK                             PPRRMK+VQWQHDLFEDSLRASGIS
Sbjct: 61  AFSISK-----------------------------PPRRMKNVQWQHDLFEDSLRASGIS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF
Sbjct: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEILRDNAEMPVSARINVTGLNGRSRRTVVLT 229
           AALKRYNNVLLDGKPMKIE+L DNA+ PVSARINVTG+NGRSRRTVVLT
Sbjct: 181 AALKRYNNVLLDGKPMKIEMLGDNADTPVSARINVTGVNGRSRRTVVLT 200

[Close]

BLAST of MS019165 vs. NCBI nr
Match: XP_022982649.1 (THO complex subunit 4D-like [Cucurbita maxima] >XP_022982650.1 THO complex subunit 4D-like [Cucurbita maxima] >XP_022982651.1 THO complex subunit 4D-like [Cucurbita maxima])

HSP 1 Score: 354.0 bits (907), Expect = 9.9e-94
Identity = 188/229 (82.10%), Postives = 195/229 (85.15%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGR-VVIGSIRRGPLSINTRPS 60
           MATPLDMSLED+IKKNNREKLRARGRARRGRGAGGS+NGGR VVIGS+RRGPL IN RPS
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AFSISKASFKLRGSVKLLFYGESHCGSPSYPYRHLPPRRMKHVQWQHDLFEDSLRASGIS 120
           AFSISK                             PPRRMK+VQWQHDLFEDSLRASGIS
Sbjct: 61  AFSISK-----------------------------PPRRMKNVQWQHDLFEDSLRASGIS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF
Sbjct: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEILRDNAEMPVSARINVTGLNGRSRRTVVLT 229
           AALKRYNNVLLDGKPMKIE+L DNA+ PVSARINVTG+NGRSRRTVVLT
Sbjct: 181 AALKRYNNVLLDGKPMKIEMLGDNADTPVSARINVTGVNGRSRRTVVLT 200

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BLAST of MS019165 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.5e-57
Identity = 124/232 (53.45%), Postives = 162/232 (69.83%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRARGRAR-RGRGAGGSFNGGRVVIGSIRRGPLSINTRPS 60
           M+  L+M+L++++K+    +   RG +R RGRG GG   GGR   G  RRGPL++N RPS
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGG---GGRGA-GPARRGPLAVNARPS 60

Query: 61  AFSISKASFKLRGSVKLLFYGESHCGSPSYPYRHLPPRRMKHVQWQHDLFEDSLRASGIS 120
           +F+I+K                             P RR++ + WQ  LFED LRA+G S
Sbjct: 61  SFTINK-----------------------------PVRRVRSLPWQSGLFEDGLRAAGAS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           G+E+GT+L+V+NLD GVT EDIRELFSEIG+++R+AIHYDKNGRPSG+AEVVY RRSDAF
Sbjct: 121 GVEVGTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEILRDN--AEMPVSAR--INVTGLNGRSRRTVVL 228
            ALK+YNNVLLDG+PM++EIL  N  +E P+S R  +NVTGLNGR +RTVV+
Sbjct: 181 QALKKYNNVLLDGRPMRLEILGGNNSSEAPLSGRVNVNVTGLNGRLKRTVVI 199

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BLAST of MS019165 vs. ExPASy Swiss-Prot
Match: Q94EH8 (THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.6e-54
Identity = 120/239 (50.21%), Postives = 163/239 (68.20%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRA-----RGRAR---RGRGAGGSFNGGRVVIGSIRRGPL 60
           M+  L+M+L++++KK+  E+  A     +G +R   RGRG      GG    G +RRGPL
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGGGPVRRGPL 60

Query: 61  SINTRP-SAFSISKASFKLRGSVKLLFYGESHCGSPSYPYRHLPPRRMKHVQW--QHDLF 120
           ++NTRP S+FSI+K +                             RR + + W  Q+DL+
Sbjct: 61  AVNTRPSSSFSINKLA-----------------------------RRKRSLPWQNQNDLY 120

Query: 121 EDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAE 180
           E++LRA G+SG+E+GT +Y++NLD GVT EDIREL++EIG+LKR+AIHYDKNGRPSGSAE
Sbjct: 121 EETLRAVGVSGVEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAE 180

Query: 181 VVYTRRSDAFAALKRYNNVLLDGKPMKIEILRDNAE-MPVSARINVTGLNGRSRRTVVL 228
           VVY RRSDA  A+++YNNVLLDG+PMK+EIL  N E  PV+AR+NVTGLNGR +R+V +
Sbjct: 181 VVYMRRSDAIQAMRKYNNVLLDGRPMKLEILGGNTESAPVAARVNVTGLNGRMKRSVFI 210

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BLAST of MS019165 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.2e-35
Identity = 98/220 (44.55%), Postives = 130/220 (59.09%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGRVVIGSIRRGPLSINTRPSA 60
           M+  LDMSL+D+I K+NR+   +RGR   G   GG+  GGR   GS        N+ PS 
Sbjct: 1   MSGGLDMSLDDII-KSNRKPTGSRGRGGIG---GGNNTGGRGGSGS--------NSGPSR 60

Query: 61  FSISKASFKLRGSVKLLFYGESHCGSPSYPY-RHLPPRRMKHVQWQHDLF--EDSLRAS- 120
              ++                   G+ + PY R +  ++     WQ+D+F  + S+ A+ 
Sbjct: 61  RFANRV------------------GARTAPYSRPIQQQQAHDAMWQNDVFATDASVAAAF 120

Query: 121 ---------GISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGS 180
                    G S IE GTKLY+SNLDYGV+ EDI+ELFSE+GDLKR+ IHYD++GR  G+
Sbjct: 121 GHHQTAVVGGGSSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGT 180

Query: 181 AEVVYTRRSDAFAALKRYNNVLLDGKPMKIEILRDNAEMP 208
           AEVV++RR DA AA+KRYNNV LDGK MKIEI+  N   P
Sbjct: 181 AEVVFSRRGDALAAVKRYNNVQLDGKLMKIEIVGTNLSAP 190

[Close]

BLAST of MS019165 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.1e-34
Identity = 88/209 (42.11%), Postives = 116/209 (55.50%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGRVVIGSIRRGPLSINTRPSA 60
           M+T LDMSL+DMI KN     ++RG A   RG G     G     + R  P   +TR + 
Sbjct: 1   MSTGLDMSLDDMIAKNR----KSRGGAGPARGTGSGSGPG----PTRRNNPNRKSTRSAP 60

Query: 61  FSISKASFKLRGSVKLLFYGESHCGSPSYPYRHLPPRRMKHVQWQHDLF----EDSLRAS 120
           +  +KA                                     W HD+F    ED     
Sbjct: 61  YQSAKA---------------------------------PESTWGHDMFSDRSEDHRSGR 120

Query: 121 GISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRS 180
             +GIE GTKLY+SNLDYGV  EDI+ELF+E+G+LKR+ +H+D++GR  G+AEVVY+RR 
Sbjct: 121 SSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRG 168

Query: 181 DAFAALKRYNNVLLDGKPMKIEILRDNAE 206
           DA AA+K+YN+V LDGKPMKIEI+  N +
Sbjct: 181 DALAAVKKYNDVQLDGKPMKIEIVGTNLQ 168

[Close]

BLAST of MS019165 vs. ExPASy Swiss-Prot
Match: B5FXN8 (THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 9.5e-31
Identity = 82/203 (40.39%), Postives = 119/203 (58.62%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNG---GRVVIGSIRRGPLSINTR 60
           MA  +DMSL+D+IK N  ++  +RG  R GRG GG+  G   GR  +G  R G   +  R
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGASRG-GRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNR 60

Query: 61  PSAFSISKASFKLRGSVKLLFYGESHCGSPSYPYRHLPPRRMKHVQWQHDLFEDSLRASG 120
           P            RG            G  + P  +  P+++   +WQHDLF+    A  
Sbjct: 61  P---------VMARG------------GGRNRPAPYSRPKQLPE-KWQHDLFDSGFGAG- 120

Query: 121 ISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSD 180
            +G+E G KL VSNLD+GV+  DI+ELF+E G LK+ A+HYD++GR  G+A+V + R++D
Sbjct: 121 -AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKAD 178

Query: 181 AFAALKRYNNVLLDGKPMKIEIL 201
           A  A+K+YN V LDG+PM I+++
Sbjct: 181 ALKAMKQYNGVPLDGRPMNIQLV 178

[Close]

BLAST of MS019165 vs. ExPASy TrEMBL
Match: A0A5D3BPA9 (THO complex subunit 4D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002100 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.3e-107
Identity = 207/231 (89.61%), Postives = 215/231 (93.07%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGR-VVIGSIRRGPLSINTRPS 60
           M TPLDMSLED+IKKNNREKLRARGRARRGRGAGGSFNGGR VVIGS+RRGPL IN R S
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AFSISKASFKLRGSVKLLFYGESHCGSPSYPYRHLPPRRMKHVQWQHDLFEDSLRASGIS 120
           A+SI KASFKL GSV +LF GESHCGSPS P   LPP RMK+VQWQHDLFEDSLRASGIS
Sbjct: 61  AYSIRKASFKLSGSV-MLFCGESHCGSPSDPNCLLPPHRMKNVQWQHDLFEDSLRASGIS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           GI+IGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF
Sbjct: 121 GIQIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEILRDNAEMPVSARINVTGLNGRSRRTVVLTYV 231
           AALKRYNNVLLDGKPMKIE+L DNAEMPVSARINVTG NGR+RRTVVLTYV
Sbjct: 181 AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGTNGRNRRTVVLTYV 230

[Close]

BLAST of MS019165 vs. ExPASy TrEMBL
Match: A0A6J1CP51 (THO complex subunit 4D-like OS=Momordica charantia OX=3673 GN=LOC111013262 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 3.8e-99
Identity = 197/228 (86.40%), Postives = 198/228 (86.84%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGRVVIGSIRRGPLSINTRPSA 60
           MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGRVVIGSIRRGPLSINTRPSA
Sbjct: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGRVVIGSIRRGPLSINTRPSA 60

Query: 61  FSISKASFKLRGSVKLLFYGESHCGSPSYPYRHLPPRRMKHVQWQHDLFEDSLRASGISG 120
           FSISK                             PPRRMK+VQWQHDLFEDSLRASGISG
Sbjct: 61  FSISK-----------------------------PPRRMKNVQWQHDLFEDSLRASGISG 120

Query: 121 IEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFA 180
           IEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFA
Sbjct: 121 IEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFA 180

Query: 181 ALKRYNNVLLDGKPMKIEILRDNAEMPVSARINVTGLNGRSRRTVVLT 229
           ALKRYNNVLLDGKPMKIEIL DNAEMPVSARINVTGLNGRSRRTVVLT
Sbjct: 181 ALKRYNNVLLDGKPMKIEILGDNAEMPVSARINVTGLNGRSRRTVVLT 199

[Close]

BLAST of MS019165 vs. ExPASy TrEMBL
Match: A0A6J1J564 (THO complex subunit 4D-like OS=Cucurbita maxima OX=3661 GN=LOC111481464 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.8e-94
Identity = 188/229 (82.10%), Postives = 195/229 (85.15%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGR-VVIGSIRRGPLSINTRPS 60
           MATPLDMSLED+IKKNNREKLRARGRARRGRGAGGS+NGGR VVIGS+RRGPL IN RPS
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AFSISKASFKLRGSVKLLFYGESHCGSPSYPYRHLPPRRMKHVQWQHDLFEDSLRASGIS 120
           AFSISK                             PPRRMK+VQWQHDLFEDSLRASGIS
Sbjct: 61  AFSISK-----------------------------PPRRMKNVQWQHDLFEDSLRASGIS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF
Sbjct: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEILRDNAEMPVSARINVTGLNGRSRRTVVLT 229
           AALKRYNNVLLDGKPMKIE+L DNA+ PVSARINVTG+NGRSRRTVVLT
Sbjct: 181 AALKRYNNVLLDGKPMKIEMLGDNADTPVSARINVTGVNGRSRRTVVLT 200

[Close]

BLAST of MS019165 vs. ExPASy TrEMBL
Match: A0A6J1FAB9 (THO complex subunit 4D-like OS=Cucurbita moschata OX=3662 GN=LOC111442248 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.8e-94
Identity = 188/229 (82.10%), Postives = 195/229 (85.15%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGR-VVIGSIRRGPLSINTRPS 60
           MATPLDMSLED+IKKNNREKLRARGRARRGRGAGGS+NGGR VVIGS+RRGPL IN RPS
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AFSISKASFKLRGSVKLLFYGESHCGSPSYPYRHLPPRRMKHVQWQHDLFEDSLRASGIS 120
           AFSISK                             PPRRMK+VQWQHDLFEDSLRASGIS
Sbjct: 61  AFSISK-----------------------------PPRRMKNVQWQHDLFEDSLRASGIS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF
Sbjct: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEILRDNAEMPVSARINVTGLNGRSRRTVVLT 229
           AALKRYNNVLLDGKPMKIE+L DNA+ PVSARINVTG+NGRSRRTVVLT
Sbjct: 181 AALKRYNNVLLDGKPMKIEMLGDNADTPVSARINVTGVNGRSRRTVVLT 200

[Close]

BLAST of MS019165 vs. ExPASy TrEMBL
Match: A0A1S3C452 (THO complex subunit 4D OS=Cucumis melo OX=3656 GN=LOC103496802 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.3e-91
Identity = 184/229 (80.35%), Postives = 191/229 (83.41%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGR-VVIGSIRRGPLSINTRPS 60
           M TPLDMSLED+IKKNNREKLRARGRARRGRGAGGSFNGGR VVIGS+RRGPL IN R S
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AFSISKASFKLRGSVKLLFYGESHCGSPSYPYRHLPPRRMKHVQWQHDLFEDSLRASGIS 120
           A+SI K                             PP RMK+VQWQHDLFEDSLRASGIS
Sbjct: 61  AYSIRK-----------------------------PPHRMKNVQWQHDLFEDSLRASGIS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           GI+IGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF
Sbjct: 121 GIQIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEILRDNAEMPVSARINVTGLNGRSRRTVVLT 229
           AALKRYNNVLLDGKPMKIE+L DNAEMPVSARINVTG NGR+RRTVVLT
Sbjct: 181 AALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGTNGRNRRTVVLT 200

[Close]

BLAST of MS019165 vs. TAIR 10
Match: AT5G37720.1 (ALWAYS EARLY 4 )

HSP 1 Score: 222.6 bits (566), Expect = 3.2e-58
Identity = 124/232 (53.45%), Postives = 162/232 (69.83%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRARGRAR-RGRGAGGSFNGGRVVIGSIRRGPLSINTRPS 60
           M+  L+M+L++++K+    +   RG +R RGRG GG   GGR   G  RRGPL++N RPS
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGG---GGRGA-GPARRGPLAVNARPS 60

Query: 61  AFSISKASFKLRGSVKLLFYGESHCGSPSYPYRHLPPRRMKHVQWQHDLFEDSLRASGIS 120
           +F+I+K                             P RR++ + WQ  LFED LRA+G S
Sbjct: 61  SFTINK-----------------------------PVRRVRSLPWQSGLFEDGLRAAGAS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           G+E+GT+L+V+NLD GVT EDIRELFSEIG+++R+AIHYDKNGRPSG+AEVVY RRSDAF
Sbjct: 121 GVEVGTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEILRDN--AEMPVSAR--INVTGLNGRSRRTVVL 228
            ALK+YNNVLLDG+PM++EIL  N  +E P+S R  +NVTGLNGR +RTVV+
Sbjct: 181 QALKKYNNVLLDGRPMRLEILGGNNSSEAPLSGRVNVNVTGLNGRLKRTVVI 199

[Close]

BLAST of MS019165 vs. TAIR 10
Match: AT5G37720.2 (ALWAYS EARLY 4 )

HSP 1 Score: 222.6 bits (566), Expect = 3.2e-58
Identity = 124/232 (53.45%), Postives = 162/232 (69.83%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRARGRAR-RGRGAGGSFNGGRVVIGSIRRGPLSINTRPS 60
           M+  L+M+L++++K+    +   RG +R RGRG GG   GGR   G  RRGPL++N RPS
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGG---GGRGA-GPARRGPLAVNARPS 60

Query: 61  AFSISKASFKLRGSVKLLFYGESHCGSPSYPYRHLPPRRMKHVQWQHDLFEDSLRASGIS 120
           +F+I+K                             P RR++ + WQ  LFED LRA+G S
Sbjct: 61  SFTINK-----------------------------PVRRVRSLPWQSGLFEDGLRAAGAS 120

Query: 121 GIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAF 180
           G+E+GT+L+V+NLD GVT EDIRELFSEIG+++R+AIHYDKNGRPSG+AEVVY RRSDAF
Sbjct: 121 GVEVGTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAF 180

Query: 181 AALKRYNNVLLDGKPMKIEILRDN--AEMPVSAR--INVTGLNGRSRRTVVL 228
            ALK+YNNVLLDG+PM++EIL  N  +E P+S R  +NVTGLNGR +RTVV+
Sbjct: 181 QALKKYNNVLLDGRPMRLEILGGNNSSEAPLSGRVNVNVTGLNGRLKRTVVI 199

[Close]

BLAST of MS019165 vs. TAIR 10
Match: AT1G66260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 214.2 bits (544), Expect = 1.1e-55
Identity = 120/239 (50.21%), Postives = 163/239 (68.20%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRA-----RGRAR---RGRGAGGSFNGGRVVIGSIRRGPL 60
           M+  L+M+L++++KK+  E+  A     +G +R   RGRG      GG    G +RRGPL
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGGGPVRRGPL 60

Query: 61  SINTRP-SAFSISKASFKLRGSVKLLFYGESHCGSPSYPYRHLPPRRMKHVQW--QHDLF 120
           ++NTRP S+FSI+K +                             RR + + W  Q+DL+
Sbjct: 61  AVNTRPSSSFSINKLA-----------------------------RRKRSLPWQNQNDLY 120

Query: 121 EDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAE 180
           E++LRA G+SG+E+GT +Y++NLD GVT EDIREL++EIG+LKR+AIHYDKNGRPSGSAE
Sbjct: 121 EETLRAVGVSGVEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAE 180

Query: 181 VVYTRRSDAFAALKRYNNVLLDGKPMKIEILRDNAE-MPVSARINVTGLNGRSRRTVVL 228
           VVY RRSDA  A+++YNNVLLDG+PMK+EIL  N E  PV+AR+NVTGLNGR +R+V +
Sbjct: 181 VVYMRRSDAIQAMRKYNNVLLDGRPMKLEILGGNTESAPVAARVNVTGLNGRMKRSVFI 210

[Close]

BLAST of MS019165 vs. TAIR 10
Match: AT1G66260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 214.2 bits (544), Expect = 1.1e-55
Identity = 120/239 (50.21%), Postives = 163/239 (68.20%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRA-----RGRAR---RGRGAGGSFNGGRVVIGSIRRGPL 60
           M+  L+M+L++++KK+  E+  A     +G +R   RGRG      GG    G +RRGPL
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGGGPVRRGPL 60

Query: 61  SINTRP-SAFSISKASFKLRGSVKLLFYGESHCGSPSYPYRHLPPRRMKHVQW--QHDLF 120
           ++NTRP S+FSI+K +                             RR + + W  Q+DL+
Sbjct: 61  AVNTRPSSSFSINKLA-----------------------------RRKRSLPWQNQNDLY 120

Query: 121 EDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAE 180
           E++LRA G+SG+E+GT +Y++NLD GVT EDIREL++EIG+LKR+AIHYDKNGRPSGSAE
Sbjct: 121 EETLRAVGVSGVEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAE 180

Query: 181 VVYTRRSDAFAALKRYNNVLLDGKPMKIEILRDNAE-MPVSARINVTGLNGRSRRTVVL 228
           VVY RRSDA  A+++YNNVLLDG+PMK+EIL  N E  PV+AR+NVTGLNGR +R+V +
Sbjct: 181 VVYMRRSDAIQAMRKYNNVLLDGRPMKLEILGGNTESAPVAARVNVTGLNGRMKRSVFI 210

[Close]

BLAST of MS019165 vs. TAIR 10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-36
Identity = 98/220 (44.55%), Postives = 130/220 (59.09%), Query Frame = 0


Query: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGRVVIGSIRRGPLSINTRPSA 60
           M+  LDMSL+D+I K+NR+   +RGR   G   GG+  GGR   GS        N+ PS 
Sbjct: 1   MSGGLDMSLDDII-KSNRKPTGSRGRGGIG---GGNNTGGRGGSGS--------NSGPSR 60

Query: 61  FSISKASFKLRGSVKLLFYGESHCGSPSYPY-RHLPPRRMKHVQWQHDLF--EDSLRAS- 120
              ++                   G+ + PY R +  ++     WQ+D+F  + S+ A+ 
Sbjct: 61  RFANRV------------------GARTAPYSRPIQQQQAHDAMWQNDVFATDASVAAAF 120

Query: 121 ---------GISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGS 180
                    G S IE GTKLY+SNLDYGV+ EDI+ELFSE+GDLKR+ IHYD++GR  G+
Sbjct: 121 GHHQTAVVGGGSSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGT 180

Query: 181 AEVVYTRRSDAFAALKRYNNVLLDGKPMKIEILRDNAEMP 208
           AEVV++RR DA AA+KRYNNV LDGK MKIEI+  N   P
Sbjct: 181 AEVVFSRRGDALAAVKRYNNVQLDGKLMKIEIVGTNLSAP 190

The following BLAST results are available for this feature:

BLAST of MS019165 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01611.1	2.7e-107	89.61	THO complex subunit 4D [Cucumis melo var. makuwa]	[more]
XP_022143379.1	7.9e-99	86.40	THO complex subunit 4D-like [Momordica charantia]	[more]
XP_022935328.1	9.9e-94	82.10	THO complex subunit 4D-like [Cucurbita moschata] >XP_022935329.1 THO complex sub...	[more]
XP_023527122.1	9.9e-94	82.10	THO complex subunit 4D [Cucurbita pepo subsp. pepo]	[more]
XP_022982649.1	9.9e-94	82.10	THO complex subunit 4D-like [Cucurbita maxima] >XP_022982650.1 THO complex subun...	[more]

BLAST of MS019165 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQ72	4.5e-57	53.45	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
Q94EH8	1.6e-54	50.21	THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1	[more]
Q8L719	2.2e-35	44.55	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
Q8L773	4.1e-34	42.11	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
B5FXN8	9.5e-31	40.39	THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1	[more]

BLAST of MS019165 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BPA9	1.3e-107	89.61	THO complex subunit 4D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]
A0A6J1CP51	3.8e-99	86.40	THO complex subunit 4D-like OS=Momordica charantia OX=3673 GN=LOC111013262 PE=4 ...	[more]
A0A6J1J564	4.8e-94	82.10	THO complex subunit 4D-like OS=Cucurbita maxima OX=3661 GN=LOC111481464 PE=4 SV=...	[more]
A0A6J1FAB9	4.8e-94	82.10	THO complex subunit 4D-like OS=Cucurbita moschata OX=3662 GN=LOC111442248 PE=4 S...	[more]
A0A1S3C452	1.3e-91	80.35	THO complex subunit 4D OS=Cucumis melo OX=3656 GN=LOC103496802 PE=4 SV=1	[more]

BLAST of MS019165 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G37720.1	3.2e-58	53.45	ALWAYS EARLY 4	[more]
AT5G37720.2	3.2e-58	53.45	ALWAYS EARLY 4	[more]
AT1G66260.1	1.1e-55	50.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G66260.2	1.1e-55	50.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	1.6e-36	44.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 126..198 e-value: 8.3E-19 score: 78.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 127..195 e-value: 6.0E-15 score: 54.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 125..202 score: 15.579141
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 122..203 e-value: 7.7E-22 score: 79.3
None	No IPR available	PANTHER	PTHR19965:SF33	THO COMPLEX SUBUNIT 4C	coord: 1..228
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..228
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 125..199 e-value: 1.13665E-42 score: 137.386
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 125..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019165.1	MS019165.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding