MS019138 (gene) Bitter gourd (TR) v1

Overview


Name	MS019138
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	30S ribosomal protein S12, chloroplastic
Location	scaffold20: 1824641 .. 1824823 (+)
RNA-Seq Expression	MS019138
Synteny	MS019138

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAATCTCGAGATTTGAAATCACTGCTTGTATACCTAGTATTGACCATAATTTACAAGAACATTATGTAGTCTTAGTAAGAGAGGGAATGGTTAAGGATTTACCCGGGAGATATCGCATTGTTCGAGGAATCCTAGATGCTGTCGGAATAAAGGATGGTCAACAAGGGCGTTCTAGTACGTTG

mRNA sequence

TTAATCTCGAGATTTGAAATCACTGCTTGTATACCTAGTATTGACCATAATTTACAAGAACATTATGTAGTCTTAGTAAGAGAGGGAATGGTTAAGGATTTACCCGGGAGATATCGCATTGTTCGAGGAATCCTAGATGCTGTCGGAATAAAGGATGGTCAACAAGGGCGTTCTAGTACGTTG

Coding sequence (CDS)

TTAATCTCGAGATTTGAAATCACTGCTTGTATACCTAGTATTGACCATAATTTACAAGAACATTATGTAGTCTTAGTAAGAGAGGGAATGGTTAAGGATTTACCCGGGAGATATCGCATTGTTCGAGGAATCCTAGATGCTGTCGGAATAAAGGATGGTCAACAAGGGCGTTCTAGTACGTTG

Protein sequence

LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPGRYRIVRGILDAVGIKDGQQGRSSTL

Homology

[Close]

BLAST of MS019138 vs. NCBI nr
Match: KEH17698.1 (S12-like, 30S ribosomal protein S12 subfamily protein [Medicago truncatula])

HSP 1 Score: 91.3 bits (225), Expect = 3.2e-15
Identity = 48/62 (77.42%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 1   LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSS 60
           L S FEITA IP I HNLQEH VVLVR G VKDLPG RYRI+RG LDAVG+KD QQGRSS
Sbjct: 98  LTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYRIIRGTLDAVGVKDRQQGRSS 157

Query: 61  TL 62
            L
Sbjct: 158 AL 159

[Close]

BLAST of MS019138 vs. NCBI nr
Match: KAF5809815.1 (putative ribosomal protein S12/S23 [Helianthus annuus])

HSP 1 Score: 90.9 bits (224), Expect = 4.1e-15
Identity = 48/62 (77.42%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSS 60
          L S FEITA IP I HN QEHYVVLVR G VKDLPG RY IVRG LDAVG+KD QQGRSS
Sbjct: 8  LTSGFEITAYIPGIGHNSQEHYVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS 67

Query: 61 TL 62
           L
Sbjct: 68 AL 69

[Close]

BLAST of MS019138 vs. NCBI nr
Match: KAB2097180.1 (hypothetical protein ES319_A01G154100v1 [Gossypium barbadense] >KAG4214887.1 hypothetical protein ERO13_A01G143838v2 [Gossypium hirsutum])

HSP 1 Score: 90.1 bits (222), Expect = 7.0e-15
Identity = 48/62 (77.42%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1   LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSS 60
           L S FEITA IP I HN QEH VVLVREG VKDLPG RY IVRG LDAVG+KD QQGRSS
Sbjct: 74  LTSGFEITAYIPGIGHNSQEHSVVLVREGRVKDLPGVRYHIVRGTLDAVGVKDHQQGRSS 133

Query: 61  TL 62
            L
Sbjct: 134 AL 135

[Close]

BLAST of MS019138 vs. NCBI nr
Match: KAG2323189.1 (hypothetical protein Bca52824_016402 [Brassica carinata])

HSP 1 Score: 90.1 bits (222), Expect = 7.0e-15
Identity = 48/61 (78.69%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1   LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSS 60
           L S FEITA IP I HNLQEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRSS
Sbjct: 57  LTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS 116

[Close]

BLAST of MS019138 vs. NCBI nr
Match: OMP12560.1 (Ribosomal protein S12, bacteria [Corchorus olitorius])

HSP 1 Score: 90.1 bits (222), Expect = 7.0e-15
Identity = 48/62 (77.42%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1   LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSS 60
           L S FEITA IP IDHN QEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRSS
Sbjct: 58  LTSGFEITAYIPGIDHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS 117

Query: 61  TL 62
            L
Sbjct: 118 AL 119

[Close]

BLAST of MS019138 vs. ExPASy Swiss-Prot
Match: Q85FG4 (30S ribosomal protein S12, chloroplastic OS=Adiantum capillus-veneris OX=13818 GN=rps12 PE=2 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 4.6e-17
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 1   LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSS 60
           L S+FE+TA IP I HNLQEH VVLVR G VKDLPG RY IVRG LDAVG+KD ++GRSS
Sbjct: 57  LTSKFEVTAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGALDAVGVKDRKKGRSS 116

Query: 61  TL 62
            L
Sbjct: 117 AL 118

[Close]

BLAST of MS019138 vs. ExPASy Swiss-Prot
Match: Q1KXY0 (30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.0e-17
Identity = 47/62 (75.81%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 1   LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSS 60
           L S FEITA IP I HN QEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRSS
Sbjct: 57  LTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS 116

Query: 61  TL 62
            L
Sbjct: 117 AL 118

[Close]

BLAST of MS019138 vs. ExPASy Swiss-Prot
Match: Q332V3 (30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.0e-17
Identity = 47/62 (75.81%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 1   LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSS 60
           L S FEITA IP I HN QEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRSS
Sbjct: 57  LTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS 116

Query: 61  TL 62
            L
Sbjct: 117 AL 118

[Close]

BLAST of MS019138 vs. ExPASy Swiss-Prot
Match: Q0G9J5 (30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.0e-17
Identity = 47/62 (75.81%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 1   LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSS 60
           L S FEITA IP I HN QEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRSS
Sbjct: 57  LTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS 116

Query: 61  TL 62
            L
Sbjct: 117 AL 118

[Close]

BLAST of MS019138 vs. ExPASy Swiss-Prot
Match: A4QJV5 (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-16
Identity = 46/59 (77.97%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 1   LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRS 59
           L S FEITA IP I HNLQEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRS
Sbjct: 57  LTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 115

[Close]

BLAST of MS019138 vs. ExPASy TrEMBL
Match: A0A072TLF8 (S12-like, 30S ribosomal protein S12 subfamily protein OS=Medicago truncatula OX=3880 GN=MTR_0002s0280 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-15
Identity = 48/62 (77.42%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 1   LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSS 60
           L S FEITA IP I HNLQEH VVLVR G VKDLPG RYRI+RG LDAVG+KD QQGRSS
Sbjct: 98  LTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYRIIRGTLDAVGVKDRQQGRSS 157

Query: 61  TL 62
            L
Sbjct: 158 AL 159

[Close]

BLAST of MS019138 vs. ExPASy TrEMBL
Match: A0A251VT10 (Putative ribosomal protein S12/S23 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr01g0027141 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-15
Identity = 48/62 (77.42%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1  LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSS 60
          L S FEITA IP I HN QEHYVVLVR G VKDLPG RY IVRG LDAVG+KD QQGRSS
Sbjct: 8  LTSGFEITAYIPGIGHNSQEHYVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS 67

Query: 61 TL 62
           L
Sbjct: 68 AL 69

[Close]

BLAST of MS019138 vs. ExPASy TrEMBL
Match: A0A1R3KZT2 (Ribosomal protein S12, bacteria OS=Corchorus olitorius OX=93759 GN=COLO4_03024 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.4e-15
Identity = 48/62 (77.42%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1   LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSS 60
           L S FEITA IP IDHN QEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRSS
Sbjct: 58  LTSGFEITAYIPGIDHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS 117

Query: 61  TL 62
            L
Sbjct: 118 AL 119

[Close]

BLAST of MS019138 vs. ExPASy TrEMBL
Match: A0A5J5WXQ2 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A01G154100v1 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.4e-15
Identity = 48/62 (77.42%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1   LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSS 60
           L S FEITA IP I HN QEH VVLVREG VKDLPG RY IVRG LDAVG+KD QQGRSS
Sbjct: 74  LTSGFEITAYIPGIGHNSQEHSVVLVREGRVKDLPGVRYHIVRGTLDAVGVKDHQQGRSS 133

Query: 61  TL 62
            L
Sbjct: 134 AL 135

[Close]

BLAST of MS019138 vs. ExPASy TrEMBL
Match: A0A1W6F872 (30S ribosomal protein S12, chloroplastic OS=Ammopiptanthus nanus OX=111851 GN=rps12 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.4e-15
Identity = 48/62 (77.42%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1   LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRSS 60
           L S FEITA IP I HNLQEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRSS
Sbjct: 57  LTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS 116

Query: 61  TL 62
            L
Sbjct: 117 AL 118

[Close]

BLAST of MS019138 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 86.3 bits (212), Expect = 9.5e-18
Identity = 46/59 (77.97%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 1   LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRS 59
           L S FEITA IP I HNLQEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRS
Sbjct: 57  LTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 115

[Close]

BLAST of MS019138 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 86.3 bits (212), Expect = 9.5e-18
Identity = 46/59 (77.97%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 1   LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRS 59
           L S FEITA IP I HNLQEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRS
Sbjct: 57  LTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 115

[Close]

BLAST of MS019138 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 86.3 bits (212), Expect = 9.5e-18
Identity = 46/59 (77.97%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 1   LISRFEITACIPSIDHNLQEHYVVLVREGMVKDLPG-RYRIVRGILDAVGIKDGQQGRS 59
           L S FEITA IP I HNLQEH VVLVR G VKDLPG RY IVRG LDAVG+KD QQGRS
Sbjct: 57  LTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 115

The following BLAST results are available for this feature:

BLAST of MS019138 vs. NCBI nr


Match Name	E-value	Identity	Description
KEH17698.1	3.2e-15	77.42	S12-like, 30S ribosomal protein S12 subfamily protein [Medicago truncatula]	[more]
KAF5809815.1	4.1e-15	77.42	putative ribosomal protein S12/S23 [Helianthus annuus]	[more]
KAB2097180.1	7.0e-15	77.42	hypothetical protein ES319_A01G154100v1 [Gossypium barbadense] >KAG4214887.1 hyp...	[more]
KAG2323189.1	7.0e-15	78.69	hypothetical protein Bca52824_016402 [Brassica carinata]	[more]
OMP12560.1	7.0e-15	77.42	Ribosomal protein S12, bacteria [Corchorus olitorius]	[more]

BLAST of MS019138 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q85FG4	4.6e-17	72.58	30S ribosomal protein S12, chloroplastic OS=Adiantum capillus-veneris OX=13818 G...	[more]
Q1KXY0	6.0e-17	75.81	30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A...	[more]
Q332V3	6.0e-17	75.81	30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE...	[more]
Q0G9J5	6.0e-17	75.81	30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=r...	[more]
A4QJV5	1.3e-16	77.97	30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]

BLAST of MS019138 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A072TLF8	1.5e-15	77.42	S12-like, 30S ribosomal protein S12 subfamily protein OS=Medicago truncatula OX=...	[more]
A0A251VT10	2.0e-15	77.42	Putative ribosomal protein S12/S23 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr01...	[more]
A0A1R3KZT2	3.4e-15	77.42	Ribosomal protein S12, bacteria OS=Corchorus olitorius OX=93759 GN=COLO4_03024 P...	[more]
A0A5J5WXQ2	3.4e-15	77.42	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A01G154100v1 PE...	[more]
A0A1W6F872	4.4e-15	77.42	30S ribosomal protein S12, chloroplastic OS=Ammopiptanthus nanus OX=111851 GN=rp...	[more]

BLAST of MS019138 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00065.1	9.5e-18	77.97	ribosomal protein S12A	[more]
ATCG01230.1	9.5e-18	77.97	ribosomal protein S12B	[more]
ATCG00905.1	9.5e-18	77.97	ribosomal protein S12C	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PRINTS	PR01034	RIBOSOMALS12	coord: 21..38 score: 63.81 coord: 2..21 score: 57.01
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 3..51 e-value: 2.2E-7 score: 30.5
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 2..60
None	No IPR available	GENE3D	2.40.50.140		coord: 1..60 e-value: 3.1E-18 score: 67.6
None	No IPR available	PANTHER	PTHR11652:SF52	30S RIBOSOMAL PROTEIN S12-B	coord: 2..60
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019138.1	MS019138.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome